Carg23564-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTATTTCTGTATTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGGTATTCACGAGATGATTTTTTGTGCATAATGTAGTTGGTGAAGTATGGAATATGAAATTCGGGCTCATTTGTGTTCTTTCCAAACGATTTAGGTAATTTGATTTCTAGGAATATGCGATTTATGCCTAATTTCCATGCGGAAGGTGCTCATATGCTTTCCTTACTGCGCTGAATGCAAGAGTTAGCCTACATTACTTGATCTCTGCCTCTCGCAATTTCTATATTGTTTTATTCATCTGCATCACAAGCAGTTAGCCTACGAATGGGATCATTCATTCCAGTGATGAGTCGGGTCACTGAAAATTTAGGACTCGTTGTAGATCAATGAAATTGGAATGGAAAATTATTTTTAATATATAGCGATACTCATGTTATGCACCTGCTATCAATAGAAATGCTTATGAACTATGAAAGTTATATAAACATCCAACATTGAAATTGTTTGTACATAAAAAACTTTAAATTAGAAAGAACCGTGCAAGAGTGTTAGTCTACCTTGTTACGTGGAACTTTGCTGGTCCTCTTATTTCTTTTGGTGGCTTGAGAATTTGAAATGTAAGGACTAGAAACACCGCCTTCCTCTCAAAGTGGATGCTTGCGTGAAGAGAGTCCCCTTAGAAGAGGCTTAATCGAGTAAATATGCGATTGGCAATCTTTGTGATATTTAGGTTCTAGAGTTGACATGGATAAAATATGAGATTTCTTTGATCAGTGTCCTTTTAAAGAATGGCAATGGTCGGAGGACATTAATGAAATCTGCCAATCTCCAGCTGAATAGTAAAGAAGGCTGGTTAGATAAACCCTTTTTTCTTTGGTTTGGAAGGAGAACTCTCAGTTCTTCCTTTGGGATATGACTTACAAGAGCCTAAACACTTGTGATTGGATTCAAAAGATGATCCCTTCCATGGCTTTATCTCCTTCGCTTACCCTGCATATCTAATGAAGAAATCTTGGACCATCTTTGTATTCAATTAGCAACATGTTGCACAAAAGGTTTACATGTGATTCCGTGACGACTCCTGTTTTGGATAGGAACCAATTTCATGGACTAAATGAAATTATACAAATAGTTAAACCCATCCGAAGAGATTGCAACAGATTTCTGGAGTTGGATGAGAGAATTTAAGCGGTAGCTATTAAAAGGAAGCATATTTTTACACGAATAAAGAGCTATGAAACAATAGGCTTCTAGGACTTTAAGTGGAGAGTTTCTTTGTCTAAAAAATCCTCGAGTTCAATTCATTCCAAATCTTCCAAATAACCGGCCTCACAATGAATGACCAAATGATATTCCCTGTCAACTTGATGGATGATCCATCAGATGCAAATTTAGCCAATCAAGAACCCCATTTTATGAGGACCAATTTCCTAAATCAGTACTCCTTTGAAATAGGCGCTAACACCCCTCCTAAGTGAGTAAACATGTTGGCCAAATCAAAATTCTTTCCAACAATTTAACGTACCGGTTTCTTGTTCTTCTATGGCATTCTCAGTGGCAGATGATAAAGCATAGAGGTGGTGGAAGTTGAAGATACCAGAGGTTCCCTAACTACTAAAGTATTGTAGTAATGCATCTATTGCCGTCTCTCCCTTTTCCTTTGTGGCATCTTTTGAACGACGTGCTAGGGTCTTGATAGAGGTTAAATGTATTAACACACTGAATTCAGAATATACGGTTTCAAAACATCTACATATTATTATTCTATTTGTATCAAGTTTTACTTTGCTCTGGATAACACTTGGTTTATTCATTTAATGTGTTTATATCTAGAGACAAGTGTATTCATCTACTCGACTTTTCTACATGAATGGGACGGGCCTTTATGTACATTAGGAAATCTTCTAGAGTAATTTAACTTAGAATTCTGTGGCTTATGAATGACCTTTTCATGATCCTCTCTTTGCATCTTTGATGTGCAACTACTTACTAATGGTAAATCTATCATTCACCACCAAATCAGCTTTTTTCAAAATGTATATTGATATGTAACTACATAAGGATGCTCGTGGGAGGTGTAAGCAGAAGAAATTATGTACTCTACCTAGCCCATTTGTCAGAAAAGGTTATGTTTAATAAGTTCCACATCTATTAATCCTCATTTCGGTTAACGAACACACCTTTCTAACTTTGTCATAATCCAAACCCAGTCTCCCAGTTGTGTACCGAACAGATTCCTTTTCAGCCTAACGTCCCCCAAGTTCGGTCTTCTTTCAAGCAATCAAACCAGTTATCTTCCTAGATTGAGATCCTAAGCCCATTCCCTATCGTATAAAGCAAACCATTTCGGACAAACCTGTACATCTAGCAAGAACAGGCCAGGAGCAGAAGGAAGACTAGGATACGTGGTTTCATTTGTTTTGCGAGTTCCAGGACTTCAAATTTTAGAAGTAGGAGTGTTATATAATCATACTTATGAGTATAAAAATTCTTGTCATTATTTATTTGAAGCTGGAAATATCGATTATTAGGCGTTTTTACTATATATGTTTGTTTTTCCCTCTTCTGTCTTGGAAATTTAGGTTTAGGAGGACGTTCAACTTTCGATGAGTGGCACCTGATCTCATCCATTTTTGCATCATATTCATTATCATTCTGAAAGTCGATAGTCTTCTTAGTTAATATTTTCGTGTTTGGTTGTATTACATTACCCTTGCCTGATTTCCTTCTATTAATGTTGTTTTCATTAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCCTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATGCTGGAACTTGCTGAGCTCATCACCGTCGTCTCTACTTACCAGAAGTTAAAAAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATGAGCATTCTTGAGAAAGGAAAACTTAGCATTGAATCATATTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTTTTAATCGTCATTTGGAGATACGGTGATTTAATCCTCTTATCTCTTAATCGAAGATATTTGTCTCAACCAATTTAATTATGTTCAGGTTCTTGACATCTTGATCGAAGAAATATATCTTAATTAATTTAATTTTG TGTATTTCTGTATTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAGTTTCAAGCGTTTCAATGTACCGTTTTCTAGGCTTTCGATTTATATGATTCACTTGTAGAATCCTATGTGTGAGCAAAGTCATGGTAAGCGGAAACCAGAAATATGCTGGAACTTGCTGAGCTCATCACCGTCGTCTCTACTTACCAGAAGTTAAAAAGGTATTGGGAATTTGGACTCTTTTTCTATCTATGACATTATCAAATGAGCATTCTTGAGAAAGGAAAACTTAGCATTGAATCATATTTTGTATTGGCAGTGTATATTTGTTGATTGATTCATGAATATCGTCATTTTTTTTAATCGTCATTTGGAGATACGGTGATTTAATCCTCTTATCTCTTAATCGAAGATATTTGTCTCAACCAATTTAATTATGTTCAGGTTCTTGACATCTTGATCGAAGAAATATATCTTAATTAATTTAATTTTG ATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAG MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPSCSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY
BLAST of Carg23564-RA vs. NCBI nr
Match: XP_022923515.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 558.5 bits (1438), Expect = 1.3e-155 Identity = 293/294 (99.66%), Postives = 293/294 (99.66%), Query Frame = 0
BLAST of Carg23564-RA vs. NCBI nr
Match: XP_023553095.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 558.5 bits (1438), Expect = 1.3e-155 Identity = 292/294 (99.32%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of Carg23564-RA vs. NCBI nr
Match: XP_022965370.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 551.2 bits (1419), Expect = 2.1e-153 Identity = 289/294 (98.30%), Postives = 290/294 (98.64%), Query Frame = 0
BLAST of Carg23564-RA vs. NCBI nr
Match: XP_008448589.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo]) HSP 1 Score: 523.5 bits (1347), Expect = 4.7e-145 Identity = 275/294 (93.54%), Postives = 286/294 (97.28%), Query Frame = 0
BLAST of Carg23564-RA vs. NCBI nr
Match: XP_022145352.1 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Momordica charantia]) HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-144 Identity = 274/294 (93.20%), Postives = 280/294 (95.24%), Query Frame = 0
BLAST of Carg23564-RA vs. TAIR10
Match: AT5G45390.1 (CLP protease P4) HSP 1 Score: 360.1 bits (923), Expect = 1.3e-99 Identity = 190/242 (78.51%), Postives = 211/242 (87.19%), Query Frame = 0
BLAST of Carg23564-RA vs. TAIR10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3) HSP 1 Score: 198.0 bits (502), Expect = 8.3e-51 Identity = 106/224 (47.32%), Postives = 152/224 (67.86%), Query Frame = 0
BLAST of Carg23564-RA vs. TAIR10
Match: AT1G02560.1 (nuclear encoded CLP protease 5) HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45 Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 0
BLAST of Carg23564-RA vs. TAIR10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6) HSP 1 Score: 156.4 bits (394), Expect = 2.8e-38 Identity = 89/245 (36.33%), Postives = 133/245 (54.29%), Query Frame = 0
BLAST of Carg23564-RA vs. TAIR10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7) HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37 Identity = 80/215 (37.21%), Postives = 135/215 (62.79%), Query Frame = 0
BLAST of Carg23564-RA vs. Swiss-Prot
Match: sp|Q94B60|CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP4 PE=1 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 2.3e-98 Identity = 190/242 (78.51%), Postives = 211/242 (87.19%), Query Frame = 0
BLAST of Carg23564-RA vs. Swiss-Prot
Match: sp|Q3ANI8|CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) OX=110662 GN=clpP1 PE=3 SV=2) HSP 1 Score: 212.6 bits (540), Expect = 5.8e-54 Identity = 104/187 (55.61%), Postives = 141/187 (75.40%), Query Frame = 0
BLAST of Carg23564-RA vs. Swiss-Prot
Match: sp|Q3B0U1|CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpP2 PE=3 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.3e-53 Identity = 103/187 (55.08%), Postives = 140/187 (74.87%), Query Frame = 0
BLAST of Carg23564-RA vs. Swiss-Prot
Match: sp|Q7V992|CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=clpP1 PE=3 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 8.4e-53 Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 0
BLAST of Carg23564-RA vs. Swiss-Prot
Match: sp|O34125|CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=clpP2 PE=3 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 1.4e-52 Identity = 103/191 (53.93%), Postives = 143/191 (74.87%), Query Frame = 0
BLAST of Carg23564-RA vs. TrEMBL
Match: tr|A0A1S3BJF4|A0A1S3BJF4_CUCME (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103490719 PE=3 SV=1) HSP 1 Score: 523.5 bits (1347), Expect = 3.1e-145 Identity = 275/294 (93.54%), Postives = 286/294 (97.28%), Query Frame = 0
BLAST of Carg23564-RA vs. TrEMBL
Match: tr|A0A0A0L3S1|A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G005040 PE=3 SV=1) HSP 1 Score: 500.4 bits (1287), Expect = 2.8e-138 Identity = 261/294 (88.78%), Postives = 277/294 (94.22%), Query Frame = 0
BLAST of Carg23564-RA vs. TrEMBL
Match: tr|A0A0D2R6I8|A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii OX=29730 GN=B456_004G175000 PE=3 SV=1) HSP 1 Score: 406.4 bits (1043), Expect = 5.6e-110 Identity = 225/298 (75.50%), Postives = 244/298 (81.88%), Query Frame = 0
BLAST of Carg23564-RA vs. TrEMBL
Match: tr|A0A1U8IV12|A0A1U8IV12_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum OX=3635 GN=LOC107900718 PE=3 SV=1) HSP 1 Score: 404.4 bits (1038), Expect = 2.1e-109 Identity = 224/298 (75.17%), Postives = 243/298 (81.54%), Query Frame = 0
BLAST of Carg23564-RA vs. TrEMBL
Match: tr|A0A2P5RSP6|A0A2P5RSP6_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13246 PE=3 SV=1) HSP 1 Score: 404.4 bits (1038), Expect = 2.1e-109 Identity = 224/298 (75.17%), Postives = 243/298 (81.54%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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