Carg27501 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGAGCTTCACTTCGACAATATGGTCAGTGGATCTCTTTCTAAATTCTTTCTTCCGTTGATTGATTTGTTCATTGTATTCTTCGTTGTATCCTTGTGGATTTTGGTCATTCGTTCTTCTGCAGATGGAACGCTTTGTGACATTTTTTGATAATTTTTGTGAGACAAAATTTGTTGGCCATAACAATGTGGAAGATTCTATTTAAGTATGATTGGTTTCTTTGATTGTGTTTTCAACCGAGTATTTTAGTTTTCTTCTGCATTTCGATGATTCTTTTACTCAACTGTGTTTCCTTTGCCTTATGCTCTCTCGATTTCTGTGTATATGCTTGTGTTTTGGTGTTTTAAATAGATAATTAATGGCTATGGCTATGACAGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGTGAGTCAAATTTGTTGTTTTCATTGATTTTAATTTTTGTCTAGAGCTTATGCATTTTGTTCTACCTTTCAAATCTCTTCGTAGGCTCCCAAACCTTCATCTGGACCTCATAAGTCAAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTTTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGGTTTTCTTAAACTTTGTAGCTATACTGTAGCAGAGTTGTTTGAATAGCTTGCTAAATTGGTTTTTCATTCTTGGAATTGGCTGTTGATTTATGAACTAAATTAGGTAAGTAATGGAGTGTTCATCATTTCAATCCTTCCACATTGACATTAGGCTATTACTAATGGCTGGTGGGGTCCTTATTGTAAGTTGTATATTATGTATCTATGGTGGCTTGAGTTTTAGTTCTGTCATCATTTTCGCTTCGCATTTTCTTCCCATTCTTCTTAATGGAAGATGTCATTTCAATTTTAATGCCTACGAAAAGCATTGTCTGTAAATGGGAATGGGGCAAATAATAGGGAATGCAACTATAGCTTTACCTGTCAAATTACTATCTCCAAACAAGATAATGTTGATAATATGTTCCATTGATTTGATTGTCAACTCATAAAAAACATTCCTTGCTCGGAGCTTCTTTGTGAGATCCCACATCGGTTGGGGAAGAGAATGAAACATTTTGATGTGGAAACCTTTCCCTAGCAGATACGTTTTAAAAACTTTAAGGGGAAGCCCGAAAGGGAAATTCCACATAGGACAATATCTACTAGCGGTAAGCTTGGGCAGTTACAAATGGTATCAGAGCCGGACATTGAACAATGTACCACGAGGAGGCTTATCCTCGAATGGGGGTGGACACGAGGTGGTGTGCCAACAAAGACTCTGGGCCTCGAAGGAGGGTGGATTGGTGGAGGGTCCCACATTGATTGAAGAATGGAACATGTGCTAGCGAGGACGCTGGACTCTGAAAGGGGGTAGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGCATTTTTAAAACCTTGAAGGGAAGCTTGAAAAAGAACGCTTATAGAGGACAATATCTGCTAGTAGTGGGCTTGGACCGTTACATTCATTGTCTCTTAGTTGTTTCATGTTTGTTCTGTTTATTACTCTTTAAATACATTTTGACCACAACATTTTGTTTTGTCTCTCCCTCCCCTTTAGATGTTGTGTCAATTCCTAAGACAAACGAGAATTTCCGGCTTCTTTATGACACAAAGGGCCGATTCCGCCTTCACTCAGTCAGAGATGAAGAGGCTAAGGTTAGCTACTGTTCCTTTGATATTGAATTTTGACCTGATATATGTTGTATTAAGTGTATTGGAGTCGAATAAAATAAATGTAATTGAAAGAGTTTTTTTTGGCGTCAATAGTACATAGTGAGATCCCACATTGGTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGCGTTTTAAAATTTTGAGGGGAAGCCCAAAAGGGAAAGCTCGAACAGGACAATGTTTGTTAGCAGTGTGTTTGGGCTGTTACAGTTGGTATCAAAGCCAGACACCAGGCGGTGTGCCAACGAGGATGCTAGGTCCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGAGAGGGGAACGAAACATTTCTTGTAAGGGTGTGAAAACCTTTACCTAGCAGACGCGTTTTAAAACCTTGAGGGGAAGTCTAGAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTATTACGTAAATAGGCTTAGCACTTCAGATGGAACATCATATTCTAAAACCATTTTGCATTGTTCAGATTTCTTCAGAGTTAGATGCCTTTTCTGGTTGTTAATATGTTACATCGATATCCTAACCCTCTCGAGCAACAGACTGGATTTGTTGAACACTGTTTATTGTCCATGCTATAATTGGACTATTCATGCTTGACTCATATTACTTTTTGCAGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCTGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCAACCGGGCACGAGTTTGCAACCCGGCTATGCAATGTGTTCACAGTTGGTAAGGGGACTAAGCCATGGGTGTCTCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATAGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTTCAGTTACCGCTTAA TCGAGCTTCACTTCGACAATATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCATCTGGACCTCATAAGTCAAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTTTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCTGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCAACCGGGCACGAGTTTGCAACCCGGCTATGCAATGTGTTCACAGTTGGTAAGGGGACTAAGCCATGGGTGTCTCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATAGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTTCAGTTACCGCTTAA ATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCATCTGGACCTCATAAGTCAAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTTTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCTGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCAACCGGGCACGAGTTTGCAACCCGGCTATGCAATGTGTTCACAGTTGGTAAGGGGACTAAGCCATGGGTGTCTCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATAGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTTCAGTTACCGCTTAA MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTFPAGFMGMFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLASQASVTA
BLAST of Carg27501 vs. NCBI nr
Match: XP_022932544.1 (40S ribosomal protein S4-3-like [Cucurbita moschata]) HSP 1 Score: 453.0 bits (1164), Expect = 6.2e-124 Identity = 231/264 (87.50%), Postives = 232/264 (87.88%), Query Frame = 0
BLAST of Carg27501 vs. NCBI nr
Match: XP_022976936.1 (40S ribosomal protein S4-3-like [Cucurbita maxima]) HSP 1 Score: 451.8 bits (1161), Expect = 1.4e-123 Identity = 230/264 (87.12%), Postives = 232/264 (87.88%), Query Frame = 0
BLAST of Carg27501 vs. NCBI nr
Match: XP_022996364.1 (40S ribosomal protein S4-3-like [Cucurbita maxima]) HSP 1 Score: 446.0 bits (1146), Expect = 7.6e-122 Identity = 225/264 (85.23%), Postives = 230/264 (87.12%), Query Frame = 0
BLAST of Carg27501 vs. NCBI nr
Match: XP_023551057.1 (40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 445.7 bits (1145), Expect = 9.9e-122 Identity = 225/264 (85.23%), Postives = 232/264 (87.88%), Query Frame = 0
BLAST of Carg27501 vs. NCBI nr
Match: XP_022942860.1 (40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_022987478.1 40S ribosomal protein S4-3-like [Cucurbita maxima]) HSP 1 Score: 445.3 bits (1144), Expect = 1.3e-121 Identity = 224/264 (84.85%), Postives = 232/264 (87.88%), Query Frame = 0
BLAST of Carg27501 vs. TAIR10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein) HSP 1 Score: 423.3 bits (1087), Expect = 9.6e-119 Identity = 209/259 (80.69%), Postives = 223/259 (86.10%), Query Frame = 0
BLAST of Carg27501 vs. TAIR10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein) HSP 1 Score: 422.9 bits (1086), Expect = 1.2e-118 Identity = 209/259 (80.69%), Postives = 222/259 (85.71%), Query Frame = 0
BLAST of Carg27501 vs. TAIR10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein) HSP 1 Score: 420.6 bits (1080), Expect = 6.2e-118 Identity = 207/259 (79.92%), Postives = 222/259 (85.71%), Query Frame = 0
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|P46299|RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1) HSP 1 Score: 426.8 bits (1096), Expect = 1.6e-118 Identity = 215/259 (83.01%), Postives = 223/259 (86.10%), Query Frame = 0
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|Q8VYK6|RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2) HSP 1 Score: 423.3 bits (1087), Expect = 1.7e-117 Identity = 209/259 (80.69%), Postives = 223/259 (86.10%), Query Frame = 0
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|P49204|RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4) HSP 1 Score: 422.9 bits (1086), Expect = 2.3e-117 Identity = 209/259 (80.69%), Postives = 222/259 (85.71%), Query Frame = 0
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|P46300|RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 2.3e-117 Identity = 210/264 (79.55%), Postives = 226/264 (85.61%), Query Frame = 0
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|Q93VH9|RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1) HSP 1 Score: 420.6 bits (1080), Expect = 1.1e-116 Identity = 207/259 (79.92%), Postives = 222/259 (85.71%), Query Frame = 0
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 4.3e-121 Identity = 225/264 (85.23%), Postives = 231/264 (87.50%), Query Frame = 0
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A1S3CEH5|A0A1S3CEH5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 1.2e-120 Identity = 223/264 (84.47%), Postives = 231/264 (87.50%), Query Frame = 0
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A1S3CEL9|A0A1S3CEL9_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1) HSP 1 Score: 441.0 bits (1133), Expect = 1.6e-120 Identity = 223/264 (84.47%), Postives = 231/264 (87.50%), Query Frame = 0
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A0A0K3Y8|A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 2.8e-120 Identity = 223/264 (84.47%), Postives = 230/264 (87.12%), Query Frame = 0
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A1S3BZK5|A0A1S3BZK5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 6.1e-120 Identity = 222/264 (84.09%), Postives = 230/264 (87.12%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |