Cp4.1LG06g09340 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g09340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S4
Location	Cp4.1LG06 : 7522434 .. 7525200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGTGAGTCAAATTTGTTGTTTTCATTGATTTTAATTTTTGTCTAGAGCTTATGCATTTTGTTTTACCTCATAATCTCTTCGTAGGCTCCCAAACCTTCATCTGGACCTCATAAGTCGAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTCTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGGTTTTCTTAAACTTTGTAACTATACTATAGCAGAGTTGTTTGAATAGCTTGCTAAATTGGTTTTTTATTCTTGGAATTGGCTGTTCATTTTATGAACTAAATTAGGGAAGTAATGGAGTGTTCATCATTTCAATCCTTCCACATTGACATTAGGCTATTGCTAATGGCTGGTGGGGTCCTTATTGTAAGTTGTATGCTATGTTTCTTTGGTGGCTTGAGTGTTAGTTCTGTCATCATTTTCGCTTCGCATTTTCTTCCCATTCTTCTCAATGGAAGATGTCATTTCAATTTTAATGCCTACGAAAAACATTATCTGTAAATGGGAATGGGGCAAATAATAGGGAATGCAACTATAGCTTTACCTGTCAAATTACTATCTCCAAACAAGATAATGTTGATATTATGTTCCATTGATTTGATTGTCAACTCATAAACTTCTTTGTGAGATCCCACATCGGTTGGGGAAGAGAATGAAACATTCTGGTGTGGAAACCTTTCCCTAGCAGATACGTTTTAAAAACCTTAAGGGGAAGCCCGAAAGGAAAATTCCAAAGAGGACAATATCTGCTAGCGGTAAGCTTGAGCAGTTACAAATGGTATTAGAGCTAGACACTGGGCAATGTGCCAGCGAGGAGGCTGAGCCTCGAATGGGGGTGGACACGAGGTGGTCTGCTAGCAAAGACTCTGGGCCTCGAAGGAGGGTGGATTGGTGGAGGGTCCCACATTGATTGAAGAAGGGAAAAAGTGCTAGCGAGGACGCTAGACTCCGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTATTTATAAGGGTGTGGAAGCCTCTCCCTAGCAGACGTGTTTTAGAAACCTTGAGGGGAAGCTCAAAAAGGAACGCTTAAAGAGGACAATATCTGCTAGCAGTGGGCTTGGGCCGTTACATTCTTTTGTCTCTTAGTCGCTTCATGTTTGTTCTGTTTATTACTCTTTAATATACATTTTAACCACAACATTTTGTTTTGTCTCTCCCTCCACTTTAGATGTTGTGTCAATTCCTAAGACAAACGAGAATTTCCGGCTTCTTTATGACACAAAGGGACGATTCCGCCTTCACTCAGTCAGAGATGAGGAGGCTAAGGTTAGCTACTGTTCCTTTGATGTTGAATTTTGACCTGATATATGTTACAATCTTGTTGTATTAAGTGTGTTAGAGTCAAATGAAAATAGATGAAATTGAAAGAGTTTTTCTTGTGGCATAAATTGTACATAAATTGTGAGATTCCACGTTGGTTGAGAGTGGAACAAAACATTCCTTATAAGAGTGTGGAAACTTCTCCCTAGCAAACACGTTCTAAAACCTTGAGAGAAAGTTTAGAAGGGGAAGCCCAAAGAGGACAAGATCTATTAGCGGTGGGCTTGAGCTATTATAGTTGGTATCAGAGCCAGACACCGGACGGTGTGCCAACGAGGATGCTGGGTCCCCAAAGGGGTGGATTGTGAGATCCCACATTGGTTAAGAGGGGAACAGGGGAACGAAACATTCCTTGTAAGGGTGTGGAAACCTCTACCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGTCCAGAAGGGAAAGCCTAAATAGGACAATATCTGTTAGCGGTGGGCTTGGGCTATTACGTAAATCATAAGCAGGCTTAGCACTTCAGATGGAACATCCTATTCTAAAACCATTTTGCATTGTTCAGATTTCTTCGAGTTAGATGCCTTTTCAGGTTGTTAACATGTTACATCGATATCCTAACCCTCTCGAGTAACAGACTGGAGTTGTTGAACACTGTTATGATTAACTCTTATATTACTTTTTGCAGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGACAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCCGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCGACCGGGCACGAGTTTGCAACCCGGCTGTGCAATGTGTTCACAGTTGGTAAGGGGACAAAGCCATGGGTGTCTCTACCCAAGGGAAAGGGTATCAAACTATCCATCATCGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTGCAGTTACCGCTTAAGAGGTAGGTAGTGTAGTGTAGTGTGTAGCCATATGATGATGAAACGTGGGGTTTTGCTCTTGTTATTGGGCTTTAGTTGATAGATGTCATCCCCAAAAGGGCTCATACTTTGTTGTTTCTACTGGAATTGTGTGA

mRNA sequence

GGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCATCTGGACCTCATAAGTCGAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTCTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGATGTTGTGTCAATTCCTAAGACAAACGAGAATTTCCGGCTTCTTTATGACACAAAGGGACGATTCCGCCTTCACTCAGTCAGAGATGAGGAGGCTAAGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGACAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCCGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCGACCGGGCACGAGTTTGCAACCCGGCTGTGCAATGTGTTCACAGTTGGTAAGGGGACAAAGCCATGGGTGTCTCTACCCAAGGGAAAGGGTATCAAACTATCCATCATCGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTGCAGTTACCGCTTAAGAGGTAGGTAGTGTAGTGTAGTGTGTAGCCATATGATGATGAAACGTGGGGTTTTGCTCTTGTTATTGGGCTTTAGTTGATAGATGTCATCCCCAAAAGGGCTCATACTTTGTTGTTTCTACTGGAATTGTGTGA

Coding sequence (CDS)

ATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCATCTGGACCTCATAAGTCGAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTCTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGATGTTGTGTCAATTCCTAAGACAAACGAGAATTTCCGGCTTCTTTATGACACAAAGGGACGATTCCGCCTTCACTCAGTCAGAGATGAGGAGGCTAAGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGACAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCCGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCGACCGGGCACGAGTTTGCAACCCGGCTGTGCAATGTGTTCACAGTTGGTAAGGGGACAAAGCCATGGGTGTCTCTACCCAAGGGAAAGGGTATCAAACTATCCATCATCGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTGCAGTTACCGCTTAA

Protein sequence

MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLASQAAVTA

Homology

[Close]

BLAST of Cp4.1LG06g09340 vs. Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 466.8 bits (1200), Expect = 1.4e-130
Identity = 223/243 (91.77%), Postives = 238/243 (97.94%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 466.5 bits (1199), Expect = 1.8e-130
Identity = 223/243 (91.77%), Postives = 237/243 (97.53%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 3.2e-130
Identity = 224/246 (91.06%), Postives = 240/246 (97.56%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVISILMQR V+VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFET+H+QD+ GHEFATRL NVFT+GKGTKPWVSLPKGKGIKL+IIE+ARKRLA+
Sbjct: 199 EKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKRLAA 258

Query: 241 QAAVTA 247
           Q+A  A
Sbjct: 259 QSATPA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 9.2e-130
Identity = 221/243 (90.95%), Postives = 237/243 (97.53%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRL++
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSA 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 5.0e-128
Identity = 224/243 (92.18%), Postives = 234/243 (96.30%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHV+VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E KFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIHVQDA GHEFATRL NVFT+GKGTKPWVSLPK KGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKRLAA 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QNA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. TrEMBL
Match: A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.5e-134
Identity = 240/246 (97.56%), Postives = 245/246 (99.59%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTFPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QDATGHEFATRL NVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QAAVTA
Sbjct: 259 QAAVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. TrEMBL
Match: A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 1.2e-133
Identity = 238/246 (96.75%), Postives = 243/246 (98.78%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKH GSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPKGKGIKLSIIEEARKRLAS
Sbjct: 199 EKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QA VTA
Sbjct: 259 QATVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. TrEMBL
Match: A0A0A0KQK7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-132
Identity = 235/246 (95.53%), Postives = 244/246 (99.19%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVD KVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAAVTA 247
           Q+AVTA
Sbjct: 259 QSAVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. TrEMBL
Match: A0A068UE00_COFCA (40S ribosomal protein S4 OS=Coffea canephora GN=GSCOC_T00023293001 PE=3 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 3.4e-131
Identity = 231/246 (93.90%), Postives = 240/246 (97.56%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRH+LVDGKVRT
Sbjct: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHILVDGKVRT 60

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+P+GFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 61  DKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 120

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 121 LNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNR 180

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIHVQDATGHEFATRL NVF +GKG KPWVSLPKGKGIKLS+IEE RKR+A+
Sbjct: 181 EKHKGSFETIHVQDATGHEFATRLGNVFIIGKGAKPWVSLPKGKGIKLSVIEEQRKRIAA 240

Query: 241 QAAVTA 247
           QAA TA
Sbjct: 241 QAATTA 246

[Close]

BLAST of Cp4.1LG06g09340 vs. TrEMBL
Match: C6TN03_SOYBN (40S ribosomal protein S4 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 4.4e-131
Identity = 229/246 (93.09%), Postives = 241/246 (97.97%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RD+EAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLI+ANDT+KLDL+ NKI DFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIHVQDATGHEFATR+ NVFT+GKGTKPW+SLPKGKGIKLSIIEEARKR+A+
Sbjct: 199 EKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAA 258

Query: 241 QAAVTA 247
           Q A TA
Sbjct: 259 QQATTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. TAIR10
Match: AT5G58420.1 (AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 466.8 bits (1200), Expect = 8.0e-132
Identity = 223/243 (91.77%), Postives = 238/243 (97.94%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. TAIR10
Match: AT5G07090.1 (AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 466.5 bits (1199), Expect = 1.0e-131
Identity = 223/243 (91.77%), Postives = 237/243 (97.53%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. TAIR10
Match: AT2G17360.1 (AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 464.2 bits (1193), Expect = 5.2e-131
Identity = 221/243 (90.95%), Postives = 237/243 (97.53%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRL++
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSA 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Cp4.1LG06g09340 vs. NCBI nr
Match: gi|449465362|ref|XP_004150397.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 486.1 bits (1250), Expect = 3.6e-134
Identity = 240/246 (97.56%), Postives = 245/246 (99.59%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTFPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QDATGHEFATRL NVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QAAVTA
Sbjct: 259 QAAVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. NCBI nr
Match: gi|659123125|ref|XP_008461503.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 484.6 bits (1246), Expect = 1.0e-133
Identity = 237/246 (96.34%), Postives = 245/246 (99.59%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTFPAGFMD++SIPKTNENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPKGKGIKLSIIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QAAVTA
Sbjct: 259 QAAVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. NCBI nr
Match: gi|659123052|ref|XP_008461463.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 484.6 bits (1246), Expect = 1.0e-133
Identity = 238/246 (96.75%), Postives = 245/246 (99.59%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTFPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVS+PKGKGIKLSIIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QAAVTA
Sbjct: 259 QAAVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. NCBI nr
Match: gi|778726350|ref|XP_004150395.2| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus])

HSP 1 Score: 483.8 bits (1244), Expect = 1.8e-133
Identity = 238/246 (96.75%), Postives = 243/246 (98.78%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKH GSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPKGKGIKLSIIEEARKRLAS
Sbjct: 199 EKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QA VTA
Sbjct: 259 QATVTA 264

[Close]

BLAST of Cp4.1LG06g09340 vs. NCBI nr
Match: gi|659109681|ref|XP_008454823.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo])

HSP 1 Score: 481.9 bits (1239), Expect = 6.8e-133
Identity = 236/246 (95.93%), Postives = 244/246 (99.19%), Query Frame = 1


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVD KVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRT 78

Query: 61  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 240
           EKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAAVTA 247
           QAAVTA
Sbjct: 259 QAAVTA 264

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g09340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS43_ARATH	1.4e-130	91.77	40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2	[more]
RS42_ARATH	1.8e-130	91.77	40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4	[more]
RS4_SOLTU	3.2e-130	91.06	40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1	[more]
RS41_ARATH	9.2e-130	90.95	40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1	[more]
RS4_GOSHI	5.0e-128	92.18	40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1	[more]

BLAST of Cp4.1LG06g09340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4K7_CUCSA	2.5e-134	97.56	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1	[more]
A0A0A0K3Y8_CUCSA	1.2e-133	96.75	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1	[more]
A0A0A0KQK7_CUCSA	1.1e-132	95.53	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1	[more]
A0A068UE00_COFCA	3.4e-131	93.90	40S ribosomal protein S4 OS=Coffea canephora GN=GSCOC_T00023293001 PE=3 SV=1	[more]
C6TN03_SOYBN	4.4e-131	93.09	40S ribosomal protein S4 OS=Glycine max PE=2 SV=1	[more]

BLAST of Cp4.1LG06g09340 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58420.1	8.0e-132	91.77	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.0e-131	91.77	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	5.2e-131	90.95	Ribosomal protein S4 (RPS4A) family protein	[more]

BLAST of Cp4.1LG06g09340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465362\|ref\|XP_004150397.1\|	3.6e-134	97.56	PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus]	[more]
gi\|659123125\|ref\|XP_008461503.1\|	1.0e-133	96.34	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]
gi\|659123052\|ref\|XP_008461463.1\|	1.0e-133	96.75	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]
gi\|778726350\|ref\|XP_004150395.2\|	1.8e-133	96.75	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus]	[more]
gi\|659109681\|ref\|XP_008454823.1\|	6.8e-133	95.93	PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR013845	Ribosomal_S4e_central_region
IPR013843	Ribosomal_S4e_N
IPR005824	KOW
IPR002942	S4_RNA-bd
IPR000876	Ribosomal_S4e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g09340.1	Cp4.1LG06g09340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 3..220 score: 30
IPR000876	Ribosomal protein S4e	PIR	PIRSF002116	RPS4a_RPS4e	coord: 1..223 score: 9.5
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 1..246 score: 1.0E
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 29..72 score: 1.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 24..88 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 24..86 score: 8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 159..192 score: 2.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 156..183 score: 7.
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 1..21 score: 3.
IPR013845	Ribosomal protein S4e, central region	PRODOM	PD002667		coord: 69..158 score: 3.0
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 77..151 score: 7.4
None	No IPR available	PANTHER	PTHR11581:SF11	SUBFAMILY NOT NAMED	coord: 1..246 score: 1.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g09340	CmaCh09G011370	Cucurbita maxima (Rimu)	cmacpeB063
Cp4.1LG06g09340	CmoCh09G011480	Cucurbita moschata (Rifu)	cmocpeB036
Cp4.1LG06g09340	Cla016355	Watermelon (97103) v1	cpewmB754
Cp4.1LG06g09340	MELO3C023660	Melon (DHL92) v3.5.1	cpemeB714
Cp4.1LG06g09340	ClCG09G010520	Watermelon (Charleston Gray)	cpewcgB690
Cp4.1LG06g09340	Lsi02G019380	Bottle gourd (USVL1VR-Ls)	cpelsiB632
Cp4.1LG06g09340	Lsi02G019320	Bottle gourd (USVL1VR-Ls)	cpelsiB634
Cp4.1LG06g09340	MELO3C023660.2	Melon (DHL92) v3.6.1	cpemedB848
Cp4.1LG06g09340	Bhi09G001339	Wax gourd	cpewgoB0991
Cp4.1LG06g09340	Carg27501	Silver-seed gourd	carcpeB1411

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g09340	Cucurbita pepo (Zucchini)	cpecpeB460
Cp4.1LG06g09340	Cucurbita maxima (Rimu)	cmacpeB505
Cp4.1LG06g09340	Cucurbita moschata (Rifu)	cmocpeB464