Carg27501 (gene) Silver-seed gourd

Overview
NameCarg27501
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S4
LocationCucurbita_argyrosperma_scaffold_354 : 57120 .. 60136 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGAGCTTCACTTCGACAATATGGTCAGTGGATCTCTTTCTAAATTCTTTCTTCCGTTGATTGATTTGTTCATTGTATTCTTCGTTGTATCCTTGTGGATTTTGGTCATTCGTTCTTCTGCAGATGGAACGCTTTGTGACATTTTTTGATAATTTTTGTGAGACAAAATTTGTTGGCCATAACAATGTGGAAGATTCTATTTAAGTATGATTGGTTTCTTTGATTGTGTTTTCAACCGAGTATTTTAGTTTTCTTCTGCATTTCGATGATTCTTTTACTCAACTGTGTTTCCTTTGCCTTATGCTCTCTCGATTTCTGTGTATATGCTTGTGTTTTGGTGTTTTAAATAGATAATTAATGGCTATGGCTATGACAGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGTGAGTCAAATTTGTTGTTTTCATTGATTTTAATTTTTGTCTAGAGCTTATGCATTTTGTTCTACCTTTCAAATCTCTTCGTAGGCTCCCAAACCTTCATCTGGACCTCATAAGTCAAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTTTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGGTTTTCTTAAACTTTGTAGCTATACTGTAGCAGAGTTGTTTGAATAGCTTGCTAAATTGGTTTTTCATTCTTGGAATTGGCTGTTGATTTATGAACTAAATTAGGTAAGTAATGGAGTGTTCATCATTTCAATCCTTCCACATTGACATTAGGCTATTACTAATGGCTGGTGGGGTCCTTATTGTAAGTTGTATATTATGTATCTATGGTGGCTTGAGTTTTAGTTCTGTCATCATTTTCGCTTCGCATTTTCTTCCCATTCTTCTTAATGGAAGATGTCATTTCAATTTTAATGCCTACGAAAAGCATTGTCTGTAAATGGGAATGGGGCAAATAATAGGGAATGCAACTATAGCTTTACCTGTCAAATTACTATCTCCAAACAAGATAATGTTGATAATATGTTCCATTGATTTGATTGTCAACTCATAAAAAACATTCCTTGCTCGGAGCTTCTTTGTGAGATCCCACATCGGTTGGGGAAGAGAATGAAACATTTTGATGTGGAAACCTTTCCCTAGCAGATACGTTTTAAAAACTTTAAGGGGAAGCCCGAAAGGGAAATTCCACATAGGACAATATCTACTAGCGGTAAGCTTGGGCAGTTACAAATGGTATCAGAGCCGGACATTGAACAATGTACCACGAGGAGGCTTATCCTCGAATGGGGGTGGACACGAGGTGGTGTGCCAACAAAGACTCTGGGCCTCGAAGGAGGGTGGATTGGTGGAGGGTCCCACATTGATTGAAGAATGGAACATGTGCTAGCGAGGACGCTGGACTCTGAAAGGGGGTAGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGCATTTTTAAAACCTTGAAGGGAAGCTTGAAAAAGAACGCTTATAGAGGACAATATCTGCTAGTAGTGGGCTTGGACCGTTACATTCATTGTCTCTTAGTTGTTTCATGTTTGTTCTGTTTATTACTCTTTAAATACATTTTGACCACAACATTTTGTTTTGTCTCTCCCTCCCCTTTAGATGTTGTGTCAATTCCTAAGACAAACGAGAATTTCCGGCTTCTTTATGACACAAAGGGCCGATTCCGCCTTCACTCAGTCAGAGATGAAGAGGCTAAGGTTAGCTACTGTTCCTTTGATATTGAATTTTGACCTGATATATGTTGTATTAAGTGTATTGGAGTCGAATAAAATAAATGTAATTGAAAGAGTTTTTTTTGGCGTCAATAGTACATAGTGAGATCCCACATTGGTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGCGTTTTAAAATTTTGAGGGGAAGCCCAAAAGGGAAAGCTCGAACAGGACAATGTTTGTTAGCAGTGTGTTTGGGCTGTTACAGTTGGTATCAAAGCCAGACACCAGGCGGTGTGCCAACGAGGATGCTAGGTCCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGAGAGGGGAACGAAACATTTCTTGTAAGGGTGTGAAAACCTTTACCTAGCAGACGCGTTTTAAAACCTTGAGGGGAAGTCTAGAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTATTACGTAAATAGGCTTAGCACTTCAGATGGAACATCATATTCTAAAACCATTTTGCATTGTTCAGATTTCTTCAGAGTTAGATGCCTTTTCTGGTTGTTAATATGTTACATCGATATCCTAACCCTCTCGAGCAACAGACTGGATTTGTTGAACACTGTTTATTGTCCATGCTATAATTGGACTATTCATGCTTGACTCATATTACTTTTTGCAGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCTGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCAACCGGGCACGAGTTTGCAACCCGGCTATGCAATGTGTTCACAGTTGGTAAGGGGACTAAGCCATGGGTGTCTCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATAGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTTCAGTTACCGCTTAA

mRNA sequence

TCGAGCTTCACTTCGACAATATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCATCTGGACCTCATAAGTCAAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTTTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCTGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCAACCGGGCACGAGTTTGCAACCCGGCTATGCAATGTGTTCACAGTTGGTAAGGGGACTAAGCCATGGGTGTCTCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATAGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTTCAGTTACCGCTTAA

Coding sequence (CDS)

ATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTTAACGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCATCTGGACCTCATAAGTCAAGGGAATGCCTTCCGTTGATCCTTATTTTGAGGAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTAATGCAACGACATGTTTTGGTCGATGGGAAGGTCAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTATGTTTAAGCTGTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGCATCCCATACCTGAACACTTACGATGGACGTACAATCCGTTATCCCGACCCTCTAATCAAGGCGAACGACACCATCAAGCTGGACCTCGACTCCAACAAGATAGCTGATTTCATCAAGTTCGACGTAGGAAACGTTGTGATGGTGACTGGTGGAAGAAACAGGGGCAGAGTTGGAGTGATAAAGAACAGGGAGAAGCACAAGGGAAGCTTTGAAACGATCCACGTTCAGGATGCAACCGGGCACGAGTTTGCAACCCGGCTATGCAATGTGTTCACAGTTGGTAAGGGGACTAAGCCATGGGTGTCTCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATAGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCTTCAGTTACCGCTTAA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTFPAGFMGMFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLASQASVTA
Homology
[Close]
BLAST of Carg27501 vs. NCBI nr
Match: XP_022932544.1 (40S ribosomal protein S4-3-like [Cucurbita moschata])

HSP 1 Score: 453.0 bits (1164), Expect = 6.2e-124
Identity = 231/264 (87.50%), Postives = 232/264 (87.88%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRHVLVDGKVRTDKTFPAGFM +                               
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. NCBI nr
Match: XP_022976936.1 (40S ribosomal protein S4-3-like [Cucurbita maxima])

HSP 1 Score: 451.8 bits (1161), Expect = 1.4e-123
Identity = 230/264 (87.12%), Postives = 232/264 (87.88%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRHVLVDGKVRTDKTFPAGFM +                               
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. NCBI nr
Match: XP_022996364.1 (40S ribosomal protein S4-3-like [Cucurbita maxima])

HSP 1 Score: 446.0 bits (1146), Expect = 7.6e-122
Identity = 225/264 (85.23%), Postives = 230/264 (87.12%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFM +                               
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. NCBI nr
Match: XP_023551057.1 (40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.7 bits (1145), Expect = 9.9e-122
Identity = 225/264 (85.23%), Postives = 232/264 (87.88%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRHVLVDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240

[Close]
BLAST of Carg27501 vs. NCBI nr
Match: XP_022942860.1 (40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_022987478.1 40S ribosomal protein S4-3-like [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 1.3e-121
Identity = 224/264 (84.85%), Postives = 232/264 (87.88%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRHVLVDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWLSLPK 240

[Close]
BLAST of Carg27501 vs. TAIR10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 423.3 bits (1087), Expect = 9.6e-119
Identity = 209/259 (80.69%), Postives = 223/259 (86.10%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRH+ VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. TAIR10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 422.9 bits (1086), Expect = 1.2e-118
Identity = 209/259 (80.69%), Postives = 222/259 (85.71%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRH+ VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. TAIR10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 420.6 bits (1080), Expect = 6.2e-118
Identity = 207/259 (79.92%), Postives = 222/259 (85.71%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRH+ VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|P46299|RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 1.6e-118
Identity = 215/259 (83.01%), Postives = 223/259 (86.10%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHV+VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA GHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|Q8VYK6|RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 423.3 bits (1087), Expect = 1.7e-117
Identity = 209/259 (80.69%), Postives = 223/259 (86.10%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRH+ VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|P49204|RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 422.9 bits (1086), Expect = 2.3e-117
Identity = 209/259 (80.69%), Postives = 222/259 (85.71%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRH+ VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|P46300|RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.3e-117
Identity = 210/264 (79.55%), Postives = 226/264 (85.61%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQR V+VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFET+H+QD+ GHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. Swiss-Prot
Match: sp|Q93VH9|RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.1e-116
Identity = 207/259 (79.92%), Postives = 222/259 (85.71%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VISILMQRH+ VDGKVRTDKT+PAGFM +                               
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 229
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 4.3e-121
Identity = 225/264 (85.23%), Postives = 231/264 (87.50%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHVLVDGKVRTDKTFPAGFM +                               
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTVGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A1S3CEH5|A0A1S3CEH5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 1.2e-120
Identity = 223/264 (84.47%), Postives = 231/264 (87.50%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHVLVDGKVRTDKTFPAGFM +                               
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

[Close]
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A1S3CEL9|A0A1S3CEL9_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.6e-120
Identity = 223/264 (84.47%), Postives = 231/264 (87.50%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHVLVDGKVRTDKTFPAGFM +                               
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A0A0K3Y8|A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.8e-120
Identity = 223/264 (84.47%), Postives = 230/264 (87.12%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHVLVDGKVRTDKTFPAGFM +                               
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKH GSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

[Close]
BLAST of Carg27501 vs. TrEMBL
Match: tr|A0A1S3BZK5|A0A1S3BZK5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 6.1e-120
Identity = 222/264 (84.09%), Postives = 230/264 (87.12%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTFPAGFMGM------------------------------- 120
           VI+ILMQRHVLVD KVRTDKT+PAGFM +                               
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 234
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

The following BLAST results are available for this feature:
BLAST of Carg27501 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932544.16.2e-12487.5040S ribosomal protein S4-3-like [Cucurbita moschata][more]
XP_022976936.11.4e-12387.1240S ribosomal protein S4-3-like [Cucurbita maxima][more]
XP_022996364.17.6e-12285.2340S ribosomal protein S4-3-like [Cucurbita maxima][more]
XP_023551057.19.9e-12285.2340S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo][more]
XP_022942860.11.3e-12184.8540S ribosomal protein S4-3-like [Cucurbita moschata] >XP_022987478.1 40S ribosom... [more]
BLAST of Carg27501 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58420.19.6e-11980.69Ribosomal protein S4 (RPS4A) family protein[more]
AT5G07090.11.2e-11880.69Ribosomal protein S4 (RPS4A) family protein[more]
AT2G17360.16.2e-11879.92Ribosomal protein S4 (RPS4A) family protein[more]
BLAST of Carg27501 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P46299|RS4_GOSHI1.6e-11883.0140S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1[more]
sp|Q8VYK6|RS43_ARATH1.7e-11780.6940S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2[more]
sp|P49204|RS42_ARATH2.3e-11780.6940S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4[more]
sp|P46300|RS4_SOLTU2.3e-11779.5540S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1[more]
sp|Q93VH9|RS41_ARATH1.1e-11679.9240S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1[more]
BLAST of Carg27501 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA4.3e-12185.2340S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1[more]
tr|A0A1S3CEH5|A0A1S3CEH5_CUCME1.2e-12084.4740S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1[more]
tr|A0A1S3CEL9|A0A1S3CEL9_CUCME1.6e-12084.4740S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1[more]
tr|A0A0A0K3Y8|A0A0A0K3Y8_CUCSA2.8e-12084.4740S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1[more]
tr|A0A1S3BZK5|A0A1S3BZK5_CUCME6.1e-12084.0940S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR018199Ribosomal_S4e_N_CS
IPR038237Ribosomal_S4e_central_sf
IPR000876Ribosomal_S4e
IPR03227740S_S4_C
IPR013843Ribosomal_S4e_N
IPR014722Rib_L2_dom2
IPR013845Ribosomal_S4e_central_region
IPR002942S4_RNA-bd
IPR005824KOW
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27501-RACarg27501-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 143..170
e-value: 7.7E-4
score: 28.8
IPR005824KOWPFAMPF00467KOWcoord: 146..179
e-value: 2.1E-6
score: 27.4
NoneNo IPR availableGENE3DG3DSA:3.10.290.40coord: 1..94
e-value: 5.5E-44
score: 150.8
NoneNo IPR availablePANTHERPTHR11581:SF11SUBFAMILY NOT NAMEDcoord: 1..88
NoneNo IPR availablePANTHERPTHR11581:SF11SUBFAMILY NOT NAMEDcoord: 90..231
NoneNo IPR availableCDDcd06087KOW_RPS4coord: 144..198
e-value: 4.00905E-29
score: 104.135
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 47..85
e-value: 3.7E-5
score: 23.2
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 90..138
e-value: 9.0E-21
score: 73.5
IPR013845Ribosomal protein S4e, central regionPRODOMPD002667coord: 90..145
e-value: 7.0E-26
score: 290.0
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 144..214
e-value: 7.3E-38
score: 130.2
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 3..39
e-value: 1.5E-19
score: 69.7
IPR03227740S ribosomal protein S4, C-terminal domainPFAMPF1612140S_S4_Ccoord: 181..227
e-value: 1.9E-25
score: 88.1
IPR000876Ribosomal protein S4ePIRSFPIRSF002116RPS4a_RPS4ecoord: 88..210
e-value: 6.3E-35
score: 118.4
coord: 1..89
e-value: 4.5E-38
score: 128.7
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 90..231
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 1..88
IPR038237Ribosomal protein S4e, central domain superfamilyGENE3DG3DSA:2.40.50.740coord: 95..141
e-value: 2.5E-30
score: 106.0
IPR018199Ribosomal protein S4e, N-terminal, conserved sitePROSITEPS00528RIBOSOMAL_S4Ecoord: 8..22

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27501Cla016355Watermelon (97103) v1carwmB1014
Carg27501ClCG09G010520Watermelon (Charleston Gray)carwcgB0989
Carg27501CmaCh09G011370Cucurbita maxima (Rimu)carcmaB1406
Carg27501CmoCh09G011480Cucurbita moschata (Rifu)carcmoB1363
Carg27501Cp4.1LG06g09340Cucurbita pepo (Zucchini)carcpeB1411
Carg27501Bhi09G001339Wax gourdcarwgoB1190
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None