Carg24193-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24193-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding KH domain-containing protein PEPPER
Location	Cucurbita_argyrosperma_scaffold_225 : 115817 .. 120848 (-)
Sequence length	1656

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAATTTTATTATTTCAATAATTTACAAAAATAAAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAACCTGCATTTCCTTACTTTCTTCCTCTCTTCCTTCGTCCTCTTTAAACCTCTGAAAATCTTAACCCTAACTTCTTCCTCCTTCTTCATCCTTCTTCATCTTCCTCCATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGAGTGTTTTTTTTTATTTTTAATTAATTAATTTATTTAGCAATGGAAATGGCTTTGTTACTCATGGTTACGTAGGGATGACGAGTTGAATCTCTATCTTTATATTGGTTTAAACTGGATTAAATGATTCATAGTCTAAAAATATCTCCATTTTCGTGCCCTCAGGTTTCCAGAAAACCAAGGCCGTTCTTCCATCTTTGGCTGGTTCCATCAAATACTAGTTAGTCATAAAAACTATTTCCCACTTCTTTCACAGCTGCCGTCCGATAATAGGTCAAGTAGTTGTATAAATGGAGCTTCTTGTGGTCGAAAGGAACATATATTATAGAATTGAGGTCTGTTCCATGGTGGCGCAATGCTCTTATCACTTAGAACTAGAGTTAGATTTGGGAGGCAAAAGGGTTTTTTTTTTTTACTATATAATTATTTGTTAGGCTTAGTTATTATGGAGTTTTTTCCCCAAATAGTTTAGGTTTTATTTGAGCTCTTTTTGTGGGTTCTTTTTCTTTGCATGCCCTTGTATTTTCTTTAAAATTTTCAAGGAAACCCCGGTTTTCAATTGAAAAAAAACAAAGACTTGAGGCAAAATATCACAGCGATCTGTCTATTAACTTCCATAATCTTGTTGTTTTTGGATAGGCTGCTTTTACATTATTTTGTTTACTGTTTATTTAAGATTATGCACCTTATACTTAGAGGAGTGCCCAAGTGATTGTGACTAGGTTCATTGAAGAACTGTAATATATATAGATCAGAGGTATAAACTTTCCTTTTAGAAGGTTGTTGCAATACCATTTTTGGATGCTTCACTTTGATTTGAAAGAAAATTTTGGATGCATTCTTGTACAATTTCTTTTGAGTAGGAGATCTTGTTTTATCTTGTTCGTTCAGCTTTTAATGTTTAGTTTTTACTTCAGGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGGTATGCTTTCGTTCTCTGTATTTCAATTCACTTGTCAGGCTCTTTTACTGATCGGTTTTGGACTTAGCTACATGAAATCTACCTGATAGCTAAATTTTAGAGACATCAGGAAGGCTATTGTTGAGGGAAAGACTATTAAGCACACACTTAAAAACCTCACATTAAGGGAAGGATTATTTAAAAGAATAATAATGTCAGAAACCTGGAGATCAATAGAAAACTCCCATCATTGTGAGAAATGCAAATGGGTCTAAGAATTGATCCACCTTACTAAGCTTCGGTTTGGCAGTGTTTACGATAAGGTACATTGTTGTTATTCTTTAACCCTTTTGATCTCACTCCAATTTTATATTGATCAACTATTCGACCAGAGGGGTGATTCCGTTAGGAAAATTCGATCAAACGTTTGTAAGAAGTGGAAATTTGGGATGCCTCATTGCAAGATTGCAACCTCACAAGTTGTTCTATATTAGAGTTTAGAATTGGATAGTTCGTAGAGACAGAATACTGAAAGACCAGTGTTAGGCCACCCTTCCACATAAACAGTTAGACTCCAATTGTGGCCAAGTTAGGAGTTCAAGTTTAAAGTAAGTACTCATCTCATTGACTATGAGTCCTTGAAAATACTAATATCCAAGGGGATCATTTGTGTCGATGGGGATTACAACTTTACCTTTTAAGGTTCCTTTTGGTTAAAAGAAACCCCTTCTCATGGTTGTCTGATTGAGCTTCCTTACTGGTAAGAGCTTACCATGTTTCTCCCCAAAGGAGAGGGGTCCTTGAGGTCAAAACCCCCTTTATTCATTAGCCCATTGAAAAGCCTTCCAGTGAAGGCATCTATCGTGTTATTTTGACATGTTTGATTTGAAGGATTAGAGTTGGTAATTAAAGTGAAGAAGAATTTCCATGATCTATCGTAGGTGTCTTTTGTTCAAATCAAACAACAAAACAAAATCAATTGGGTAGAAACTACCGGGTGAAAGGGAGTATTCGTACAAGTCTATTGTCAACTAGCGAAAGACCAATGGCAGTTGAATCTATTGAGAACAAAGTGTAGCTCTGATACCAACTGTCAAGCTTATTGGTCGTTAGGGGAATGGATTCACAATTTGTTCTCAATAAAATTGTGAACCCATTCCCCTAACGGCCAATAAACTTGAGAAAAATTTCAGTCCCAATTCATCCCTAGGAATGTTTCTCAGTAGTCAGTTCTATTCCGATATGCTAGTGATATTTCCATGAAGACTACAATGTAGTACTTAGGCTGCCATGTACCGTTTCTATGATGGGCAACCATAAGTCATTCCCCAGTTAAGAGAATCATAATGCTCGAATCTATTTTAACGTTGTTAACCAAGTTTTCGTCATTGGAAATAGCAGACAGGTAGTTTATGTGGGGTTAATTGTTGGAGCAGGATCGGGTTCTTTCTTTTTTCTTTTTTGATTGAAAGTGGAAATAGAACTACATTGCTCAGCTTAGTATCATGGTTGCTCACATGCCTTTCCCTAGCTGCAAGCTACTTGTCTCATTACTCATTGCGCTTGGTGACGGTCACCCCCATAACATTGATCTTTGGAATGATTTAACTTGCACATACACTTCGTCACTTACAACCGTTGTCTTCAACAATACGTAGATGTTGATGTTCAAATATTTGACCATTTGTGTCGATGTTTCCTTGACTAGTTGAGCTATGCTTAGATCGATGGTAGATAGTAGTCTTGTCACCACATTTGAACTTGTTGGTATAGGTGGCATGTCAACCTATTGTGAGCTAACCTTAGAGAAGCTTACTTAATCTCTGATTCACTAACATCTTTCTGTTGCTGATACATGGTAAAGATGACCTAAAACTAAAAGTACATGACAATAGCTAGATAAATTAAGTGTTATTTCTTTCCTCAATTATGCTGTGATAAATCAAAGTAACCAAGTATGATGACTATTAACTTCAAGCCTTGAGATTCAGTCGACAGCTGCAAGCAAATACATTTCCTACTATAGTCATTCGTCTATGAGTACTCTCTGAATGTTCCCTTACTCATCTACATTCGATGCTTGCAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGATCATAGTGTTCTTCCTCTGTTTGAAAAGAGTGTAAGTTTTTTCCTCTTAGGTTATGTTCAACCTCCTCTTTTACCATACTTTAGGACTGCCAATGAATTGTTGCAACTTTTTTTTAATAGTTCAATACACCTGCCTCACAAGATCGCCAAACGGATGCCTGGGCTGACAAGTCCTCACTTCTTTCTGCATCTCAAAGTGTAATTTCCACCGAGTATCCTCCATCTTCAAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTTCATCCTCTGGTATTTCTCTCTATGGACCAGATCGAGTGCTTCCTGCAATTCGATCATCAGGTGTTGGTCGCTCCGGTGTGCCTATTGTCACTCAGGTTGGTATATGTAGTTATTGGTTGAAGGAAATGGTCTATGTTGACTCAGGCCTTGTGAGGCTGCAAACTATACCATCATTGCATGTCCATTTTTCTTTTTCCAGTCTTGATGTCCAGACAAGCTGGAAGCTTGTTAGCTTTACATGTCCATCGTGCCTTGGAAACACTATGTCCAAAATGTTTGGCATATTGCATACAAATATTATTTAGCATAATGCTGAATGGAGGCCGTGGGGTCACACAGTAGTTACCGAGTTCGTCTTTATCATCTTTGACCGAGTCACCTCTTTGTGGTTCCTGTCAGGTCACGCAGACAATGCAAATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAGCAAATATCGCATTCATCCGTCGCAATAGTGGTGCAATCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCACTGTGGAAATAAAAGGCACTTCCTCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAATTTCCCCGTTTGACTATTAACTTTCTGGTTATTGCTTGTTACGGTCCATAGCGTTGCGCTGCGATACTCTGTTTCCCATGTCATGCAAAAAGTTACTTATATTTCATTGTACAACTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACTCTCTTATAAGGGTGTTTTGTTCT

mRNA sequence

TTTAAAATTTTATTATTTCAATAATTTACAAAAATAAAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAACCTGCATTTCCTTACTTTCTTCCTCTCTTCCTTCGTCCTCTTTAAACCTCTGAAAATCTTAACCCTAACTTCTTCCTCCTTCTTCATCCTTCTTCATCTTCCTCCATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGATCATAGTGTTCTTCCTCTGTTTGAAAAGAGTTTCAATACACCTGCCTCACAAGATCGCCAAACGGATGCCTGGGCTGACAAGTCCTCACTTCTTTCTGCATCTCAAAGTGTAATTTCCACCGAGTATCCTCCATCTTCAAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTTCATCCTCTGGTATTTCTCTCTATGGACCAGATCGAGTGCTTCCTGCAATTCGATCATCAGGTGTTGGTCGCTCCGGTGTGCCTATTGTCACTCAGGTCACGCAGACAATGCAAATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAGCAAATATCGCATTCATCCGTCGCAATAGTGGTGCAATCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCACTGTGGAAATAAAAGGCACTTCCTCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAATTTCCCCGTTTGACTATTAACTTTCTGGTTATTGCTTGTTACGGTCCATAGCGTTGCGCTGCGATACTCTGTTTCCCATGTCATGCAAAAAGTTACTTATATTTCATTGTACAACTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACTCTCTTATAAGGGTGTTTTGTTCT

Coding sequence (CDS)

ATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGA

Protein sequence

MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGGPPKEVFS

Homology

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BLAST of Carg24193-RA vs. NCBI nr
Match: XP_022965514.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 432.2 bits (1110), Expect = 1.2e-117
Identity = 222/229 (96.94%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQ YLSAPASDSVP
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQVYLSAPASDSVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHA ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAVASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERM+EL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMLELQGETLK 229

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BLAST of Carg24193-RA vs. NCBI nr
Match: XP_022938096.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 7.8e-117
Identity = 220/229 (96.07%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSS QLAFEAAPEPDSTEA GAES IDPSNQDYLSAPASDS+P
Sbjct: 1   MATNTTTENGSTDADALNSSAQLAFEAAPEPDSTEASGAESGIDPSNQDYLSAPASDSLP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAP SPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPFSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

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BLAST of Carg24193-RA vs. NCBI nr
Match: XP_023538336.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 7.8e-117
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATN TTENGSTDADALNSSPQLA EAA EPDSTEAGGAESDIDPSNQDYLSAPASD VP
Sbjct: 1   MATNATTENGSTDADALNSSPQLACEAAAEPDSTEAGGAESDIDPSNQDYLSAPASDYVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFR+IVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRIIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

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BLAST of Carg24193-RA vs. NCBI nr
Match: XP_022929700.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 384.4 bits (986), Expect = 2.9e-103
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SVPH-ESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLK 233

[Close]

BLAST of Carg24193-RA vs. NCBI nr
Match: XP_022996845.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 2.9e-103
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SVPH-ESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLK 233

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BLAST of Carg24193-RA vs. TAIR10
Match: AT4G26000.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 244.2 bits (622), Expect = 8.4e-65
Identity = 120/170 (70.59%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 64  PNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGT 123
           P+   +++++WPGWPGDCVFR+IVPV KVG+IIGR+GD IKK+CEETRARI+VLDG V T
Sbjct: 57  PDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNT 116

Query: 124 PDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDE----AKASFCSVRLLVASTQ 183
           PDR+VLISGKEEPEA +SPAMDAVLR+F+RVSG  +N+D+    A + F SVRLLVASTQ
Sbjct: 117 PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176

Query: 184 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           AINLIGKQGSLIKSI E++GASVR+LS +E PFYA  DER+V+L G  LK
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226

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BLAST of Carg24193-RA vs. TAIR10
Match: AT3G04610.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-44
Identity = 90/170 (52.94%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 58  SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVL 117
           S P E     G  +K+WPGWPG+ VFR++VP  KVGSIIGR+GD+IKKI EETRARI++L
Sbjct: 165 SEPEEDAT-VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL 224

Query: 118 DGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKR-VSGFSENEDEA-KASFCSVRLLV 177
           DG  GT +R V++SGKEEPE+ L P+MD +LR+  R V G      +A   S  S RLLV
Sbjct: 225 DGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLV 284

Query: 178 ASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAG 226
            ++QA +LIGKQG  +K+IQE++   VRVL  +++P +A  D+R+VE+ G
Sbjct: 285 PASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333

[Close]

BLAST of Carg24193-RA vs. TAIR10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 0


Query: 60  PHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDG 119
           P+  P   G  ++  P    +  FRL+ P  KVGS+IG+ G +++ +  E+ A I+V D 
Sbjct: 257 PNPMPEDVGPFNR--PVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDP 316

Query: 120 AVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQ 179
              + +R+++IS +E  E   S A D V+R+  R+         A  +    RLLV S  
Sbjct: 317 THDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVA----RLLVHSPY 376

Query: 180 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGS----- 239
              L+GK G LI  ++ +TGAS+RV + D+   Y    + +V++ G NLK  Q +     
Sbjct: 377 IGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIG-NLKTVQDALFQIL 436

Query: 240 --------------RGSGGPP 242
                         +G GGPP
Sbjct: 437 CRLREAMFPGRLPFQGMGGPP 450

[Close]

BLAST of Carg24193-RA vs. TAIR10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-17
Identity = 50/142 (35.21%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL+ PV  + S+IG+ G LI ++ +ETRA I+V        D ++ IS +E  E   SP 
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346

Query: 144 MDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVR 203
           ++AV+R+  + S   E  D    SF + RLLV S++   ++GK G++I  ++  T A++R
Sbjct: 347 IEAVMRLQPKCSDKVE-RDSGLVSF-TTRLLVPSSRIGCILGKGGAIITEMRRMTKANIR 406

Query: 204 VLSGDEMPFYAGPDERMVELAG 226
           +L  + +P  A  D+ MV+++G
Sbjct: 407 ILGKENLPKVASDDDEMVQISG 426

[Close]

BLAST of Carg24193-RA vs. TAIR10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-16
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 86  IVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMD 145
           I P   VG +IG+ G  I +I +ET A IRV        D ++ IS KE  E   SPA++
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYE-DQSPAVN 333

Query: 146 AVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVL 205
           A +R+ +R S   +   +A     S RLLV+S+Q   LIGK G++I  ++  T A++R+L
Sbjct: 334 AAIRLQQRCS--EKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRIL 393

Query: 206 SGDEMPFYAGPDERMVELAG 226
             +++P  A  DE MV++ G
Sbjct: 394 QKEDVPKIAREDEEMVQITG 410

[Close]

BLAST of Carg24193-RA vs. Swiss-Prot
Match: sp|Q9SZH4|PEP_ARATH (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-63
Identity = 120/170 (70.59%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 64  PNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGT 123
           P+   +++++WPGWPGDCVFR+IVPV KVG+IIGR+GD IKK+CEETRARI+VLDG V T
Sbjct: 57  PDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNT 116

Query: 124 PDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDE----AKASFCSVRLLVASTQ 183
           PDR+VLISGKEEPEA +SPAMDAVLR+F+RVSG  +N+D+    A + F SVRLLVASTQ
Sbjct: 117 PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176

Query: 184 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           AINLIGKQGSLIKSI E++GASVR+LS +E PFYA  DER+V+L G  LK
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226

[Close]

BLAST of Carg24193-RA vs. Swiss-Prot
Match: sp|Q9SR13|FLK_ARATH (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-43
Identity = 90/170 (52.94%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 58  SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVL 117
           S P E     G  +K+WPGWPG+ VFR++VP  KVGSIIGR+GD+IKKI EETRARI++L
Sbjct: 165 SEPEEDAT-VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL 224

Query: 118 DGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKR-VSGFSENEDEA-KASFCSVRLLV 177
           DG  GT +R V++SGKEEPE+ L P+MD +LR+  R V G      +A   S  S RLLV
Sbjct: 225 DGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLV 284

Query: 178 ASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAG 226
            ++QA +LIGKQG  +K+IQE++   VRVL  +++P +A  D+R+VE+ G
Sbjct: 285 PASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333

[Close]

BLAST of Carg24193-RA vs. Swiss-Prot
Match: sp|F4KDN0|HEN4_ARATH (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-14
Identity = 40/148 (27.03%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 80  DCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAP 139
           D VF+++      G +IG  G +++ +  ET A I V +      +R++ ++  E PE  
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510

Query: 140 LSPAMDAVLRIFKRVSGFSENE--DEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQES 199
            SPA  A++ IF R+   + N+  D    S  + RL+V ++Q   ++GK G ++  ++++
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570

Query: 200 TGASVRVLSGDEMPFYAGPDERMVELAG 226
           TGA++++L  ++ P     ++++V++ G
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITG 598

[Close]

BLAST of Carg24193-RA vs. Swiss-Prot
Match: sp|Q5E9A3|PCBP1_BOVIN (Poly(rC)-binding protein 1 OS=Bos taurus OX=9913 GN=PCBP1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL++   +VGSIIG++G+ +K+I EE+ ARI + +G    P+R++ ++G   P   +  A
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 76

Query: 144 MDAVL-RIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASV 203
              ++ ++ + ++    N   A     ++RL+V +TQ  +LIGK G  IK I+ESTGA V
Sbjct: 77  FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 136

Query: 204 RVLSGDEMPFYAGPDERMVELAG 226
           +V +GD +P      ER + +AG
Sbjct: 137 QV-AGDMLP---NSTERAITIAG 150

[Close]

BLAST of Carg24193-RA vs. Swiss-Prot
Match: sp|Q15365|PCBP1_HUMAN (Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL++   +VGSIIG++G+ +K+I EE+ ARI + +G    P+R++ ++G   P   +  A
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 76

Query: 144 MDAVL-RIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASV 203
              ++ ++ + ++    N   A     ++RL+V +TQ  +LIGK G  IK I+ESTGA V
Sbjct: 77  FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 136

Query: 204 RVLSGDEMPFYAGPDERMVELAG 226
           +V +GD +P      ER + +AG
Sbjct: 137 QV-AGDMLP---NSTERAITIAG 150

[Close]

BLAST of Carg24193-RA vs. TrEMBL
Match: tr|A0A0A0LMH4|A0A0A0LMH4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 5.9e-97
Identity = 193/239 (80.75%), Postives = 202/239 (84.52%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDA     S  L   AA EPDSTEAG  +S   PSNQDY S P SDS  
Sbjct: 1   MATNTTTENGSTDAIPNPLSSTLPSLAAAEPDSTEAGDDDSXXXPSNQDYSSVPPSDSAA 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HE  NH G SDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRVLDGA
Sbjct: 61  HEPSNHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEE E+PLSPAMDAV+R+FKRVSG SENEDEAKASFCS+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGG 240
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAG DERMVEL G +LK  +   G  G
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVG 239

[Close]

BLAST of Carg24193-RA vs. TrEMBL
Match: tr|A0A1S4E0X0|A0A1S4E0X0_CUCME (RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo OX=3656 GN=LOC103492560 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.3e-96
Identity = 192/239 (80.33%), Postives = 204/239 (85.36%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTT+NGSTDA A   S  L   AA E DSTE G  +SDIDPSNQDY S P SDS  
Sbjct: 1   MATNTTTDNGSTDAIANPQSSTLPSLAAAEADSTEVGDDDSDIDPSNQDYSSLPPSDSAA 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HE  +H GASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRVLDGA
Sbjct: 61  HEPSSHTGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEE ++PLSPAMDAV+R+FKRVSG SENEDEAKASF S+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELDSPLSPAMDAVIRVFKRVSGLSENEDEAKASFSSIRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGG 240
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAG DERMVEL G +LK  +   G  G
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVG 239

[Close]

BLAST of Carg24193-RA vs. TrEMBL
Match: tr|F6GXK2|F6GXK2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0052g00030 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.1e-70
Identity = 137/169 (81.07%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 67  AGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDR 126
           A AS+KKWPGWPGDCVFRLIVPV+KVGSIIGR+G+LIKK+CEETRARIRVLDGAVGT DR
Sbjct: 64  APASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDR 123

Query: 127 VVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKA------SFCSVRLLVASTQA 186
           +VLISG+EEPEAPLSPAMDAV+R+FKRV+G SE+E + KA      +FCS+RLLVASTQA
Sbjct: 124 IVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQA 183

Query: 187 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDE+PFYA  DER+VEL G  LK
Sbjct: 184 INLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALK 232

[Close]

BLAST of Carg24193-RA vs. TrEMBL
Match: tr|M5XYS8|M5XYS8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G074800 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.2e-70
Identity = 134/166 (80.72%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 70  SDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVL 129
           +DK+WPGWPGDCVFRLIVPV+KVGSIIGR+G+LIKK+CEETRARIRVLDGAVGTPDR+VL
Sbjct: 80  ADKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVL 139

Query: 130 ISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKAS------FCSVRLLVASTQAINL 189
           ISG+EEPEAPLSPAMDAV+RIFKR+SG +++E +AK S      FCS+RLLVASTQAINL
Sbjct: 140 ISGREEPEAPLSPAMDAVIRIFKRISGLADSEGDAKVSGPAGVAFCSIRLLVASTQAINL 199

Query: 190 IGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           IGKQGSLIKSIQESTGASVRVLSGDE+PFYA  +ER+VEL G  LK
Sbjct: 200 IGKQGSLIKSIQESTGASVRVLSGDEVPFYAAAEERIVELQGEALK 245

[Close]

BLAST of Carg24193-RA vs. TrEMBL
Match: tr|W9SIR6|W9SIR6_9ROSA (Poly(RC)-binding protein 3 OS=Morus notabilis OX=981085 GN=L484_005636 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.2e-70
Identity = 157/236 (66.53%), Postives = 177/236 (75.00%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSP-QLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSV 60
           MATN  T NG T A   +S P      AA    + +A   E      N++  S PA    
Sbjct: 1   MATNEPTANGVTKAPKSDSQPIPSDATAAASTANEKAPVTEPGHATGNRNMESEPAPXXX 60

Query: 61  PHESP-NHAGA-----SDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRAR 120
               P ++AG      +DKKW GWPGDCVFRLIVPV+KVGSIIGR+G+LIKK+CEETRAR
Sbjct: 61  XXXXPASNAGTTATTDADKKWLGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRAR 120

Query: 121 IRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRL 180
           IRVLDGAVGTPDR+VLISGKEEPEA LSPAMDAV+R+FKRVSG SENE  A  +FCS+RL
Sbjct: 121 IRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRVFKRVSGLSENE-AAGVAFCSIRL 180

Query: 181 LVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           LVASTQAINLIGKQGSLIKSIQESTGASVRVL+GDE+PFYA  DER+VEL G  LK
Sbjct: 181 LVASTQAINLIGKQGSLIKSIQESTGASVRVLTGDEVPFYAAADERIVELQGEGLK 235

The following BLAST results are available for this feature:

BLAST of Carg24193-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965514.1	1.2e-117	96.94	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]
XP_022938096.1	7.8e-117	96.07	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]
XP_023538336.1	7.8e-117	96.51	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo...	[more]
XP_022929700.1	2.9e-103	85.84	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]
XP_022996845.1	2.9e-103	85.84	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]

BLAST of Carg24193-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26000.1	8.4e-65	70.59	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	1.6e-44	52.94	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	1.7e-17	30.85	RNA-binding KH domain-containing protein	[more]
AT5G15270.2	3.8e-17	35.21	RNA-binding KH domain-containing protein	[more]
AT1G14170.3	2.5e-16	37.86	RNA-binding KH domain-containing protein	[more]

BLAST of Carg24193-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZH4\|PEP_ARATH	1.5e-63	70.59	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9SR13\|FLK_ARATH	3.0e-43	52.94	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
sp\|F4KDN0\|HEN4_ARATH	3.8e-14	27.03	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
sp\|Q5E9A3\|PCBP1_BOVIN	1.4e-13	35.66	Poly(rC)-binding protein 1 OS=Bos taurus OX=9913 GN=PCBP1 PE=2 SV=1	[more]
sp\|Q15365\|PCBP1_HUMAN	1.4e-13	35.66	Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2	[more]

BLAST of Carg24193-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMH4\|A0A0A0LMH4_CUCSA	5.9e-97	80.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1	[more]
tr\|A0A1S4E0X0\|A0A1S4E0X0_CUCME	1.3e-96	80.33	RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|F6GXK2\|F6GXK2_VITVI	2.1e-70	81.07	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0052g00030 PE=4 SV=...	[more]
tr\|M5XYS8\|M5XYS8_PRUPE	6.2e-70	80.72	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G074800 PE=4 SV=1	[more]
tr\|W9SIR6\|W9SIR6_9ROSA	6.2e-70	66.53	Poly(RC)-binding protein 3 OS=Morus notabilis OX=981085 GN=L484_005636 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24193	Carg24193	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24193-RA	Carg24193-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24193-RA.three_prime_UTR.3	Carg24193-RA.three_prime_UTR.3	three_prime_UTR
Carg24193-RA.three_prime_UTR.2	Carg24193-RA.three_prime_UTR.2	three_prime_UTR
Carg24193-RA.three_prime_UTR.1	Carg24193-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24193-RA.CDS.3	Carg24193-RA.CDS.3	CDS
Carg24193-RA.CDS.2	Carg24193-RA.CDS.2	CDS
Carg24193-RA.CDS.1	Carg24193-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24193-RA.five_prime_UTR.1	Carg24193-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24193-RA.exon.5	Carg24193-RA.exon.5	exon
Carg24193-RA.exon.4	Carg24193-RA.exon.4	exon
Carg24193-RA.exon.3	Carg24193-RA.exon.3	exon
Carg24193-RA.exon.2	Carg24193-RA.exon.2	exon
Carg24193-RA.exon.1	Carg24193-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 167..233 e-value: 0.009 score: 25.2 coord: 79..152 e-value: 6.2E-11 score: 52.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 171..227 e-value: 4.5E-9 score: 35.9 coord: 83..135 e-value: 8.3E-12 score: 44.7
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 165..232 e-value: 3.4E-12 score: 47.9
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 80..154 e-value: 6.7E-15 score: 56.3
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 74..155
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 165..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..246
None	No IPR available	PANTHER	PTHR10288:SF132	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER	coord: 47..229
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 47..229
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 80..147 score: 14.194
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 168..225 score: 11.594
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 170..225 e-value: 3.00433E-14 score: 64.0347
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 82..151 e-value: 1.68611E-20 score: 81.3687