Carg06151-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCCTTCCTTCAAGATACGTCGTAAGCTGGCCCTTCTTGGCGCTGGAACATTCAACTGGAGTTGACGTTCGCGGTCGCTGAAAGAGGACATGTCCGTCGCTGTTCCCTTGTCGCAAATGGACGTGGATGATGAGTCTTTGCCTAATTCTTGGAGTAGTAAGATTGTCATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGTAGGAGTACGCCATTTATTGGAGTCTTTGGAAATTGGAGCTTTGAGATTTGAATACGAACTGTTTGTCTTTTTTAAATTTTGTTTCGTTGCTAAGAATCGGTTTCATGGTGAATCGCAAAAGATACTTCGGAATCCAGGATGAGAGTTTTTCAAATGTAATAAAGGTTCATTGATTGCGCGGTTGCTATTGATGAAGAAAGAGGTTTCATTGGAGGAGCAGTTTTGATTCTGATTTCGAAATAAATTGTGTTTCGTAACTCATTTTTTCATTAGAATTGGGGTCAAATACTGCAGAGTAAGAAAGGGGGGAAAAGTCAGAATCTCCGGAGTTTAGGATGATTCGCTTTAGCGTTGCATTCTATTGCTTGTATGATCCAGGTAATGACAGGGAAGGGATGCTCTCATACGGTGGTCAAAATACGGCTCATAAGAAGAAATATTATCCAAGCGCCATTAAATTTTTTGGGGTGGACCTATCCCCAGATAATGTGGCTGTCGCCATGGTCTATTTTGTTCAAGGGGTTTTAGCCTTAGCAAGGCTTGCTGTTAGTTTTTACTTAAAGGATGACTTCATAGATCCGGCAGAG TCCTTCCTTCAAGATACGTCGTAAGCTGGCCCTTCTTGGCGCTGGAACATTCAACTGGAGTTGACGTTCGCGGTCGCTGAAAGAGGACATGTCCGTCGCTGTTCCCTTGTCGCAAATGGACGTGGATGATGAGTCTTTGCCTAATTCTTGGAGTAGTAATGACAGGGAAGGGATGCTCTCATACGGTGGTCAAAATACGGCTCATAAGAAGAAATATTATCCAAGCGCCATTAAATTTTTTGGGGTGGACCTATCCCCAGATAATGTGGCTGTCGCCATGGTCTATTTTGTTCAAGGGGTTTTAGCCTTAGCAAGGCTTGCTGTTAGTTTTTACTTAAAGGATGACTTCATAGATCCGGCAGAG ATGTCCGTCGCTGTTCCCTTGTCGCAAATGGACGTGGATGATGAGTCTTTGCCTAATTCTTGGAGTAGTAATGACAGGGAAGGGATGCTCTCATACGGTGGTCAAAATACGGCTCATAAGAAGAAATATTATCCAAGCGCCATTAAATTTTTTGGGGTGGACCTATCCCCAGATAATGTGGCTGTCGCCATGGTCTATTTTGTTCAAGGGGTTTTAGCCTTAGCAAGGCTTGCTGTTAGTTTTTACTTAAAGGATGACTTCATAGATCCGGCAGAG MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNVAVAMVYFVQGVLALARLAVSFYLKDDFIDPAE
BLAST of Carg06151-RA vs. NCBI nr
Match: XP_022934360.1 (folate-biopterin transporter 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 177.2 bits (448), Expect = 2.6e-41 Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0
BLAST of Carg06151-RA vs. NCBI nr
Match: XP_023540227.1 (folate-biopterin transporter 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39 Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0
BLAST of Carg06151-RA vs. NCBI nr
Match: XP_022974385.1 (folate-biopterin transporter 1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39 Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0
BLAST of Carg06151-RA vs. NCBI nr
Match: XP_022975484.1 (folate-biopterin transporter 1, chloroplastic-like isoform X4 [Cucurbita maxima]) HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39 Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0
BLAST of Carg06151-RA vs. NCBI nr
Match: XP_022975480.1 (folate-biopterin transporter 1, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39 Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0
BLAST of Carg06151-RA vs. TAIR10
Match: AT2G32040.1 (Major facilitator superfamily protein) HSP 1 Score: 80.1 bits (196), Expect = 7.8e-16 Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Carg06151-RA vs. Swiss-Prot
Match: sp|Q9SKZ5|FBT1_ARATH (Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g32040 PE=1 SV=2) HSP 1 Score: 80.1 bits (196), Expect = 1.4e-14 Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Carg06151-RA vs. TrEMBL
Match: tr|A0A1S3AWK4|A0A1S3AWK4_CUCME (folate-biopterin transporter 1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483700 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 3.5e-26 Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 0
BLAST of Carg06151-RA vs. TrEMBL
Match: tr|A0A0A0L5H4|A0A0A0L5H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146530 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26 Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 0
BLAST of Carg06151-RA vs. TrEMBL
Match: tr|A0A1S3AX13|A0A1S3AX13_CUCME (folate-biopterin transporter 1, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483700 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 6.4e-20 Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0
BLAST of Carg06151-RA vs. TrEMBL
Match: tr|A0A058ZWF2|A0A058ZWF2_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L003921 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16 Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 0
BLAST of Carg06151-RA vs. TrEMBL
Match: tr|A0A218WBV1|A0A218WBV1_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025669 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16 Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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