Carg06151 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06151
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Folate-biopterin transporter 1, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_016 : 54 .. 842 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCCTTCAAGATACGTCGTAAGCTGGCCCTTCTTGGCGCTGGAACATTCAACTGGAGTTGACGTTCGCGGTCGCTGAAAGAGGACATGTCCGTCGCTGTTCCCTTGTCGCAAATGGACGTGGATGATGAGTCTTTGCCTAATTCTTGGAGTAGTAAGATTGTCATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGTAGGAGTACGCCATTTATTGGAGTCTTTGGAAATTGGAGCTTTGAGATTTGAATACGAACTGTTTGTCTTTTTTAAATTTTGTTTCGTTGCTAAGAATCGGTTTCATGGTGAATCGCAAAAGATACTTCGGAATCCAGGATGAGAGTTTTTCAAATGTAATAAAGGTTCATTGATTGCGCGGTTGCTATTGATGAAGAAAGAGGTTTCATTGGAGGAGCAGTTTTGATTCTGATTTCGAAATAAATTGTGTTTCGTAACTCATTTTTTCATTAGAATTGGGGTCAAATACTGCAGAGTAAGAAAGGGGGGAAAAGTCAGAATCTCCGGAGTTTAGGATGATTCGCTTTAGCGTTGCATTCTATTGCTTGTATGATCCAGGTAATGACAGGGAAGGGATGCTCTCATACGGTGGTCAAAATACGGCTCATAAGAAGAAATATTATCCAAGCGCCATTAAATTTTTTGGGGTGGACCTATCCCCAGATAATGTGGCTGTCGCCATGGTCTATTTTGTTCAAGGGGTTTTAGCCTTAGCAAGGCTTGCTGTTAGTTTTTACTTAAAGGATGACTTCATAGATCCGGCAGAG

mRNA sequence

TCCTTCCTTCAAGATACGTCGTAAGCTGGCCCTTCTTGGCGCTGGAACATTCAACTGGAGTTGACGTTCGCGGTCGCTGAAAGAGGACATGTCCGTCGCTGTTCCCTTGTCGCAAATGGACGTGGATGATGAGTCTTTGCCTAATTCTTGGAGTAGTAATGACAGGGAAGGGATGCTCTCATACGGTGGTCAAAATACGGCTCATAAGAAGAAATATTATCCAAGCGCCATTAAATTTTTTGGGGTGGACCTATCCCCAGATAATGTGGCTGTCGCCATGGTCTATTTTGTTCAAGGGGTTTTAGCCTTAGCAAGGCTTGCTGTTAGTTTTTACTTAAAGGATGACTTCATAGATCCGGCAGAG

Coding sequence (CDS)

ATGTCCGTCGCTGTTCCCTTGTCGCAAATGGACGTGGATGATGAGTCTTTGCCTAATTCTTGGAGTAGTAATGACAGGGAAGGGATGCTCTCATACGGTGGTCAAAATACGGCTCATAAGAAGAAATATTATCCAAGCGCCATTAAATTTTTTGGGGTGGACCTATCCCCAGATAATGTGGCTGTCGCCATGGTCTATTTTGTTCAAGGGGTTTTAGCCTTAGCAAGGCTTGCTGTTAGTTTTTACTTAAAGGATGACTTCATAGATCCGGCAGAG

Protein sequence

MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNVAVAMVYFVQGVLALARLAVSFYLKDDFIDPAE

Homology

[Close]

BLAST of Carg06151 vs. NCBI nr
Match: XP_022934360.1 (folate-biopterin transporter 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-41
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV 60
          MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV
Sbjct: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV 60

Query: 61 AVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
          AVAMVYFVQGVLALARLAVSFYLKDD  +DPAE
Sbjct: 61 AVAMVYFVQGVLALARLAVSFYLKDDLHLDPAE 93

[Close]

BLAST of Carg06151 vs. NCBI nr
Match: XP_023540227.1 (folate-biopterin transporter 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV 60
          MSVAVPLSQMDVDDES PNSWSSNDREGMLSYGGQNTAH KKYYPS IKFFGVDLSPDNV
Sbjct: 1  MSVAVPLSQMDVDDESAPNSWSSNDREGMLSYGGQNTAHMKKYYPSTIKFFGVDLSPDNV 60

Query: 61 AVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
          AVAMVYFVQGVLALARLAVSFYLKDD  +DPAE
Sbjct: 61 AVAMVYFVQGVLALARLAVSFYLKDDLHLDPAE 93

[Close]

BLAST of Carg06151 vs. NCBI nr
Match: XP_022974385.1 (folate-biopterin transporter 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV 60
          MSVAVPLSQMDVDDESLPNSWSSNDREGM SY GQNTAHKKKYYPS IKFFGVDLSPDNV
Sbjct: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMPSYSGQNTAHKKKYYPSTIKFFGVDLSPDNV 60

Query: 61 AVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
          AVAMVYFVQGVLALARLAVSFYLKDD  +DPAE
Sbjct: 61 AVAMVYFVQGVLALARLAVSFYLKDDLHLDPAE 93

[Close]

BLAST of Carg06151 vs. NCBI nr
Match: XP_022975484.1 (folate-biopterin transporter 1, chloroplastic-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV 60
          MSVAVPLSQMDVDDESLPNSWSSNDREGM SY GQNTAHKKKYYPS IKFFGVDLSPDNV
Sbjct: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMPSYSGQNTAHKKKYYPSTIKFFGVDLSPDNV 60

Query: 61 AVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
          AVAMVYFVQGVLALARLAVSFYLKDD  +DPAE
Sbjct: 61 AVAMVYFVQGVLALARLAVSFYLKDDLHLDPAE 93

[Close]

BLAST of Carg06151 vs. NCBI nr
Match: XP_022975480.1 (folate-biopterin transporter 1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNV 60
          MSVAVPLSQMDVDDESLPNSWSSNDREGM SY GQNTAHKKKYYPS IKFFGVDLSPDNV
Sbjct: 1  MSVAVPLSQMDVDDESLPNSWSSNDREGMPSYSGQNTAHKKKYYPSTIKFFGVDLSPDNV 60

Query: 61 AVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
          AVAMVYFVQGVLALARLAVSFYLKDD  +DPAE
Sbjct: 61 AVAMVYFVQGVLALARLAVSFYLKDDLHLDPAE 93

[Close]

BLAST of Carg06151 vs. TAIR10
Match: AT2G32040.1 (Major facilitator superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.8e-16
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 8   SQMDVDDESLPNSWSSNDREGMLSYGGQNTAHK-KKYYPSAIKFFGVDLSPDNVAVAMVY 67
           S++ V +    N+    DR+   S   Q    K +    S IKF+GV+LSPDNVAVAMVY
Sbjct: 75  SRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLSSSRIKFYGVELSPDNVAVAMVY 134

Query: 68  FVQGVLALARLAVSFYLKDDF-IDPAE 93
           FVQGVL LARLAVSFYLKDD  +DPAE
Sbjct: 135 FVQGVLGLARLAVSFYLKDDLHLDPAE 161

[Close]

BLAST of Carg06151 vs. Swiss-Prot
Match: sp|Q9SKZ5|FBT1_ARATH (Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g32040 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-14
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 8   SQMDVDDESLPNSWSSNDREGMLSYGGQNTAHK-KKYYPSAIKFFGVDLSPDNVAVAMVY 67
           S++ V +    N+    DR+   S   Q    K +    S IKF+GV+LSPDNVAVAMVY
Sbjct: 75  SRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLSSSRIKFYGVELSPDNVAVAMVY 134

Query: 68  FVQGVLALARLAVSFYLKDDF-IDPAE 93
           FVQGVL LARLAVSFYLKDD  +DPAE
Sbjct: 135 FVQGVLGLARLAVSFYLKDDLHLDPAE 161

[Close]

BLAST of Carg06151 vs. TrEMBL
Match: tr|A0A1S3AWK4|A0A1S3AWK4_CUCME (folate-biopterin transporter 1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483700 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-26
Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MSVAVPLSQMDVDDESLPNSWSSNDREGML-SYGGQNTAHKKKYYPSAIKFFGVDLSPDN 60
           MSVAVP+      DESLPNS SSND EGM+ SY G+   HKKKY PS IK FGVDLSPDN
Sbjct: 66  MSVAVPMG-----DESLPNSRSSNDMEGMVSSYSGKTAVHKKKYSPSNIKIFGVDLSPDN 125

Query: 61  VAVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
           VAVAMVYFVQGVL LARLAVSFYLKDD  +DPAE
Sbjct: 126 VAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAE 154

[Close]

BLAST of Carg06151 vs. TrEMBL
Match: tr|A0A0A0L5H4|A0A0A0L5H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146530 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MSVAVPLSQMDVDDESLPNSWSSNDREGMLSYGG-QNTAHKKKYYPSAIKFFGVDLSPDN 60
           MSVAVP+     DDESLPNS SSND EGM+S    + T HKKKYY S IK FGVDLSPDN
Sbjct: 66  MSVAVPM-----DDESLPNSRSSNDMEGMVSSNSDKTTVHKKKYYTSTIKIFGVDLSPDN 125

Query: 61  VAVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
           VAVAMVYFVQGVL LARLAVSFYLKDD  +DPAE
Sbjct: 126 VAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAE 154

[Close]

BLAST of Carg06151 vs. TrEMBL
Match: tr|A0A1S3AX13|A0A1S3AX13_CUCME (folate-biopterin transporter 1, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483700 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.4e-20
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 24 NDREGML-SYGGQNTAHKKKYYPSAIKFFGVDLSPDNVAVAMVYFVQGVLALARLAVSFY 83
          ND EGM+ SY G+   HKKKY PS IK FGVDLSPDNVAVAMVYFVQGVL LARLAVSFY
Sbjct: 12 NDMEGMVSSYSGKTAVHKKKYSPSNIKIFGVDLSPDNVAVAMVYFVQGVLGLARLAVSFY 71

Query: 84 LKDDF-IDPAE 93
          LKDD  +DPAE
Sbjct: 72 LKDDLHLDPAE 82

[Close]

BLAST of Carg06151 vs. TrEMBL
Match: tr|A0A058ZWF2|A0A058ZWF2_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L003921 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MSVAVPL----SQMDVDDESLPNSWSSNDREGM-------LSYGGQNTAHKKKYYPSAIK 60
           MS AV +     + D D + L NS  + + + +        S   +N   KKK Y S+IK
Sbjct: 1   MSTAVQMPAAPRRWDEDHDRLLNSMGAGNGDTLTANDDKETSTSSRNVLRKKKSYTSSIK 60

Query: 61  FFGVDLSPDNVAVAMVYFVQGVLALARLAVSFYLKDDF-IDPAE 93
           FFGVDLSPDN+AVAMVYFVQGVL LARLAVSFYLKDD  +DPAE
Sbjct: 61  FFGVDLSPDNIAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAE 104

[Close]

BLAST of Carg06151 vs. TrEMBL
Match: tr|A0A218WBV1|A0A218WBV1_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025669 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 22  SSNDREGMLSYGGQNTAHKKKYYPSAIKFFGVDLSPDNVAVAMVYFVQGVLALARLAVSF 81
           ++ND++   +Y  +N   KKK+  S+IKFFGVDLSPDNVAVAMVYFVQGVL L+RLAVSF
Sbjct: 97  TANDQD--TTYSNRNAVRKKKHLMSSIKFFGVDLSPDNVAVAMVYFVQGVLGLSRLAVSF 156

Query: 82  YLKDDF-IDPAE 93
           YLKDD  +DPAE
Sbjct: 157 YLKDDLHLDPAE 166

The following BLAST results are available for this feature:

BLAST of Carg06151 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934360.1	2.6e-41	96.77	folate-biopterin transporter 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023540227.1	1.4e-39	93.55	folate-biopterin transporter 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974385.1	2.4e-39	93.55	folate-biopterin transporter 1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022975484.1	2.4e-39	93.55	folate-biopterin transporter 1, chloroplastic-like isoform X4 [Cucurbita maxima]	[more]
XP_022975480.1	2.4e-39	93.55	folate-biopterin transporter 1, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg06151 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32040.1	7.8e-16	56.32	Major facilitator superfamily protein	[more]

BLAST of Carg06151 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SKZ5\|FBT1_ARATH	1.4e-14	56.32	Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg06151 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWK4\|A0A1S3AWK4_CUCME	3.5e-26	75.53	folate-biopterin transporter 1, chloroplastic-like isoform X1 OS=Cucumis melo OX...	[more]
tr\|A0A0A0L5H4\|A0A0A0L5H4_CUCSA	4.5e-26	75.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146530 PE=4 SV=1	[more]
tr\|A0A1S3AX13\|A0A1S3AX13_CUCME	6.4e-20	78.87	folate-biopterin transporter 1, chloroplastic-like isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A058ZWF2\|A0A058ZWF2_EUCGR	2.5e-16	54.81	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L00...	[more]
tr\|A0A218WBV1\|A0A218WBV1_PUNGR	2.5e-16	68.06	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025669 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039309	BT1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06151-RA	Carg06151-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR31585:SF23	SUBFAMILY NOT NAMED	coord: 34..92
IPR039309	Biopterin transporter family	PANTHER	PTHR31585	FAMILY NOT NAMED	coord: 34..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06151	Csa3G146530	Cucumber (Chinese Long) v2	carcuB0975
Carg06151	CmaCh14G017190	Cucurbita maxima (Rimu)	carcmaB1320
Carg06151	CmaCh00G003560	Cucurbita maxima (Rimu)	carcmaB1315
Carg06151	CmoCh06G014030	Cucurbita moschata (Rifu)	carcmoB1288
Carg06151	Lsi05G016140	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06151	Cp4.1LG08g04090	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06151	Cla97C05G086230	Watermelon (97103) v2	carwmbB1008
Carg06151	Cla97C06G115800	Watermelon (97103) v2	carwmbB1009
Carg06151	Bhi12G001509	Wax gourd	carwgoB1114
Carg06151	Bhi01G000574	Wax gourd	carwgoB1119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06151	Carg10029	Silver-seed gourd	carcarB266
Carg06151	Carg23512	Silver-seed gourd	carcarB630

The following block(s) are covering this gene:

None