Carg23969-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23969-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	far upstream element-binding protein 1
Location	Cucurbita_argyrosperma_scaffold_253 : 200644 .. 201795 (+)
Sequence length	1152

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA

mRNA sequence

ATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA

Coding sequence (CDS)

ATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA

Protein sequence

MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQQPPYQGYSQPASGGYASNWDQSTVPPNQPATQGSGYDYYNQQPPQQQQTPGAPGATGDNSGYSYGQPQASTYNQQGYSQDGYGGGYHAPQAGYSQPPTYDQQGYSSAPNYGNVANAAQDGINSYESQGDSSQTVPPAQPSSVSQQGYGASQQPSPNPGSYPPPNQSGYGMTAPSHTGYGNQPAAQTGYGASYGPPQTQKQPANPPAYGQSTQSPSTPSGYGQPAALSSGYSSSQAPTTGYTQSDSGSQRVPPSSYGTAAQPGFAPPPYGVPPTSQPGYGQAPPPYSSSYGAGYPQPPYSSDGNTGGAAARGGYDSAPSAQSALQSGVAKASPKS

Homology

[Close]

BLAST of Carg23969-RA vs. NCBI nr
Match: XP_022951946.1 (far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 5.5e-69
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX
Sbjct: 315 MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 374

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX
Sbjct: 375 SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 434

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 494

Query: 181 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPAQPSSVSQQGYGASQQPSPNPGSY
Sbjct: 495 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 523

[Close]

BLAST of Carg23969-RA vs. NCBI nr
Match: XP_022951945.1 (far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 5.5e-69
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX
Sbjct: 315 MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 374

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX
Sbjct: 375 SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 434

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 494

Query: 181 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPAQPSSVSQQGYGASQQPSPNPGSY
Sbjct: 495 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 523

[Close]

BLAST of Carg23969-RA vs. NCBI nr
Match: XP_008444487.1 (PREDICTED: far upstream element-binding protein 1 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 9.4e-61
Identity = 155/210 (73.81%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYNM            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNMSQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQST+PPNQPATQGSGYDY                 TGDNSGYSYGQP AS 
Sbjct: 368 SGGYASNWDQSTIPPNQPATQGSGYDYYGQQAPQQQQAAGGPGATGDNSGYSYGQPPAST 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                   XXXXXX     XXXXXXXXXXXXXXXXX NYGNVANAAQDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQXXXXXXYHAPQXXXXXXXXXXXXXXXXXTNYGNVANAAQDGLNSYGSQGDSS 487

Query: 181 QTVPP-AQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPP AQPSSV QQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAQPSSVGQQGYSANQQPSPNPGSY 517

[Close]

BLAST of Carg23969-RA vs. NCBI nr
Match: XP_004142921.1 (PREDICTED: far upstream element-binding protein 1 [Cucumis sativus] >KGN62398.1 hypothetical protein Csa_2G351790 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 2.2e-57
Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYN+            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNISQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDY                 TGDNSGYSYGQP A+ 
Sbjct: 368 SGGYASNWDQSTVPPNQPATQGSGYDYYGQQAPQQQQTAGGPGATGDNSGYSYGQPPATT 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                            XXXXXXXXXXXXXXXXXXX    NVANA QDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQDGYGGNYHAXXXXXXXXXXXXXXXXXXXXXXXNVANATQDGLNSYGSQGDSS 487

Query: 181 QTVPPA--QPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPA  QPSSVSQQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAPQPSSVSQQGYSANQQPSPNPGSY 518

[Close]

BLAST of Carg23969-RA vs. NCBI nr
Match: XP_023536823.1 (far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 9.4e-53
Identity = 188/209 (89.95%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQTRPPSSWGPPGAP MQQPGYGYGQQGGYS         XXXXXXXXXXX
Sbjct: 315 MSGGYNQQGYQTRPPSSWGPPGAPSMQQPGYGYGQQGGYSXXXXXXXXXXXXXXXXXXXX 374

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
                   DQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXX  DNSGYSYGQPQA X
Sbjct: 375 XXXXXXXXDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXXXDNSGYSYGQPQAXX 434

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 494

Query: 181 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPAQPSSVSQQGYGASQQPSPNPGSY
Sbjct: 495 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 523

[Close]

BLAST of Carg23969-RA vs. TAIR10
Match: AT2G25970.1 (KH domain-containing protein)

HSP 1 Score: 46.2 bits (108), Expect = 5.2e-05
Identity = 24/32 (75.00%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 1   MSGGYNQQ-GYQTRPPSSWGPPGAPPMQQPGY 32
           M GGY QQ GYQ RPPSSW PPG PP  QPGY
Sbjct: 312 MGGGYPQQGGYQARPPSSWAPPGGPP-AQPGY 342

[Close]

BLAST of Carg23969-RA vs. TrEMBL
Match: tr|A0A1S3B9Y5|A0A1S3B9Y5_CUCME (far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.2e-61
Identity = 155/210 (73.81%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYNM            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNMSQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQST+PPNQPATQGSGYDY                 TGDNSGYSYGQP AS 
Sbjct: 368 SGGYASNWDQSTIPPNQPATQGSGYDYYGQQAPQQQQAAGGPGATGDNSGYSYGQPPAST 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                   XXXXXX     XXXXXXXXXXXXXXXXX NYGNVANAAQDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQXXXXXXYHAPQXXXXXXXXXXXXXXXXXTNYGNVANAAQDGLNSYGSQGDSS 487

Query: 181 QTVPP-AQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPP AQPSSV QQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAQPSSVGQQGYSANQQPSPNPGSY 517

[Close]

BLAST of Carg23969-RA vs. TrEMBL
Match: tr|A0A0A0LKT6|A0A0A0LKT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.4e-57
Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYN+            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNISQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDY                 TGDNSGYSYGQP A+ 
Sbjct: 368 SGGYASNWDQSTVPPNQPATQGSGYDYYGQQAPQQQQTAGGPGATGDNSGYSYGQPPATT 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                            XXXXXXXXXXXXXXXXXXX    NVANA QDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQDGYGGNYHAXXXXXXXXXXXXXXXXXXXXXXXNVANATQDGLNSYGSQGDSS 487

Query: 181 QTVPPA--QPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPA  QPSSVSQQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAPQPSSVSQQGYSANQQPSPNPGSY 518

[Close]

BLAST of Carg23969-RA vs. TrEMBL
Match: tr|W9R3G4|W9R3G4_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_019523 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 118/205 (57.56%), Postives = 127/205 (61.95%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNM-QXXXXXXXXXX 60
           MSGGY QQGYQ RPP+SWGPPGAPP QQPGYGYGQ G YSGPSSQYNM Q          
Sbjct: 309 MSGGYPQQGYQARPPTSWGPPGAPPTQQPGYGYGQPGSYSGPSSQYNMPQHSYPGYPPQP 368

Query: 61  XSGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQAS 120
            SGGY S+WDQSTVPP+Q  + G GYDY                   DN+GY+YGQ  AS
Sbjct: 369 TSGGYPSSWDQSTVPPSQQTSHGGGYDYYSQQAPTHQQQNPGAAAPADNTGYNYGQTGAS 428

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDS 180
             XXXXXXXXXXXXXXXX X       XXXXXXXXXX              +SY SQGDS
Sbjct: 429 GYXXXXXXXXXXXXXXXXPXSGYGQPPXXXXXXXXXXXXXXXXXXXXXXXTSSYGSQGDS 488

Query: 181 SQTVPPAQPSSVSQQGYGASQQPSP 205
           +Q  P   P+S  QQGY  S QPSP
Sbjct: 489 TQAPPSVPPTSAGQQGYNTS-QPSP 512

[Close]

BLAST of Carg23969-RA vs. TrEMBL
Match: tr|A0A2P6Q185|A0A2P6Q185_ROSCH (Putative K domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0310631 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 111/212 (52.36%), Postives = 125/212 (58.96%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYN-MQXXXXXXXXXX 60
           M+GGY+QQGYQ RPP+ W P G PPMQQPGYGYGQ G YSG + QYN  Q          
Sbjct: 306 MAGGYSQQGYQARPPTGWAPSG-PPMQQPGYGYGQSGAYSGTTPQYNASQPSYPGYPPQP 365

Query: 61  XSGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQAS 120
            SGGY +NWDQS V P Q  +Q  GYDY                   DN+ Y+YGQP  S
Sbjct: 366 ASGGYPTNWDQSAVAPTQQTSQAGGYDYYSQQPSYQQQNPGGPAAPADNASYNYGQPPIS 425

Query: 121 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQD-GINSYESQG 180
                            XXXXXXXXXXXXXXXXXXX   NYGNV+N A D   +SY SQG
Sbjct: 426 GYNQQGQGYPQDGYGGYXXXXXXXXXXXXXXXXXXXPAANYGNVSNPAPDTHTSSYGSQG 485

Query: 181 DSSQTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           +S+Q  PP QP+   QQ Y A+QQPSPNP SY
Sbjct: 486 ESTQ-APPVQPAPGGQQAYSATQQPSPNPASY 515

[Close]

BLAST of Carg23969-RA vs. TrEMBL
Match: tr|B9INI7|B9INI7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G055300v3 PE=4 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-29
Identity = 126/211 (59.72%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYN-MQXXXXXXXXXX 60
           M GGY QQGYQ RPP+SWGP   PPMQQ GYGY Q G Y G S+QYN  Q          
Sbjct: 310 MGGGYPQQGYQARPPTSWGPSSGPPMQQAGYGYMQAGAYPGASAQYNTSQPAYPGYPPQQ 369

Query: 61  XSGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQAS 120
            SGGY  NWDQS+V  NQ   Q  GYDY  XXXXXXXXXXXXXXX  D +GY+Y Q  AS
Sbjct: 370 PSGGYPPNWDQSSVSANQ---QNQGYDYYSXXXXXXXXXXXXXXXPADGTGYNYSQAPAS 429

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDG-INSYESQGD 180
              XXXXXXXXXXXXXXXXXXXXX             P+Y NVAN AQ+G   SY +QGD
Sbjct: 430 GYNXXXXXXXXXXXXXXXXXXXXXPPPYDQQQGYTSAPSYSNVANPAQEGHAPSYGAQGD 489

Query: 181 SSQTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           S+Q    +QPS++ QQGY   QQPSPNP SY
Sbjct: 490 SAQ--GSSQPSAMGQQGYSTGQQPSPNPASY 515

The following BLAST results are available for this feature:

BLAST of Carg23969-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951946.1	5.5e-69	100.00	far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022951945.1	5.5e-69	100.00	far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_008444487.1	9.4e-61	73.81	PREDICTED: far upstream element-binding protein 1 [Cucumis melo]	[more]
XP_004142921.1	2.2e-57	69.67	PREDICTED: far upstream element-binding protein 1 [Cucumis sativus] >KGN62398.1 ...	[more]
XP_023536823.1	9.4e-53	89.95	far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg23969-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25970.1	5.2e-05	75.00	KH domain-containing protein	[more]

BLAST of Carg23969-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23969-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9Y5\|A0A1S3B9Y5_CUCME	6.2e-61	73.81	far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 P...	[more]
tr\|A0A0A0LKT6\|A0A0A0LKT6_CUCSA	1.4e-57	69.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1	[more]
tr\|W9R3G4\|W9R3G4_9ROSA	2.7e-32	57.56	Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_0195...	[more]
tr\|A0A2P6Q185\|A0A2P6Q185_ROSCH	3.0e-31	52.36	Putative K domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6...	[more]
tr\|B9INI7\|B9INI7_POPTR	4.8e-29	59.72	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G055300v3 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23969	Carg23969	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23969-RA.exon.1	Carg23969-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23969-RA.CDS.1	Carg23969-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23969-RA	Carg23969-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..129
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 1..383
None	No IPR available	PANTHER	PTHR10288:SF171	F17H15.1/F17H15.1	coord: 1..383