Carg23969 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23969
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	far upstream element-binding protein 1
Location	Cucurbita_argyrosperma_scaffold_253 : 200644 .. 201795 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA

mRNA sequence

ATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA

Coding sequence (CDS)

ATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA

Protein sequence

MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQQPPYQGYSQPASGGYASNWDQSTVPPNQPATQGSGYDYYNQQPPQQQQTPGAPGATGDNSGYSYGQPQASTYNQQGYSQDGYGGGYHAPQAGYSQPPTYDQQGYSSAPNYGNVANAAQDGINSYESQGDSSQTVPPAQPSSVSQQGYGASQQPSPNPGSYPPPNQSGYGMTAPSHTGYGNQPAAQTGYGASYGPPQTQKQPANPPAYGQSTQSPSTPSGYGQPAALSSGYSSSQAPTTGYTQSDSGSQRVPPSSYGTAAQPGFAPPPYGVPPTSQPGYGQAPPPYSSSYGAGYPQPPYSSDGNTGGAAARGGYDSAPSAQSALQSGVAKASPKS

Homology

[Close]

BLAST of Carg23969 vs. NCBI nr
Match: XP_022951946.1 (far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 5.5e-69
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX
Sbjct: 315 MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 374

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX
Sbjct: 375 SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 434

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 494

Query: 181 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPAQPSSVSQQGYGASQQPSPNPGSY
Sbjct: 495 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 523

[Close]

BLAST of Carg23969 vs. NCBI nr
Match: XP_022951945.1 (far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 5.5e-69
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX
Sbjct: 315 MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 374

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX
Sbjct: 375 SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 434

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 494

Query: 181 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPAQPSSVSQQGYGASQQPSPNPGSY
Sbjct: 495 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 523

[Close]

BLAST of Carg23969 vs. NCBI nr
Match: XP_008444487.1 (PREDICTED: far upstream element-binding protein 1 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 9.4e-61
Identity = 155/210 (73.81%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYNM            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNMSQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQST+PPNQPATQGSGYDY                 TGDNSGYSYGQP AS 
Sbjct: 368 SGGYASNWDQSTIPPNQPATQGSGYDYYGQQAPQQQQAAGGPGATGDNSGYSYGQPPAST 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                   XXXXXX     XXXXXXXXXXXXXXXXX NYGNVANAAQDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQXXXXXXYHAPQXXXXXXXXXXXXXXXXXTNYGNVANAAQDGLNSYGSQGDSS 487

Query: 181 QTVPP-AQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPP AQPSSV QQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAQPSSVGQQGYSANQQPSPNPGSY 517

[Close]

BLAST of Carg23969 vs. NCBI nr
Match: XP_004142921.1 (PREDICTED: far upstream element-binding protein 1 [Cucumis sativus] >KGN62398.1 hypothetical protein Csa_2G351790 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 2.2e-57
Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYN+            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNISQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDY                 TGDNSGYSYGQP A+ 
Sbjct: 368 SGGYASNWDQSTVPPNQPATQGSGYDYYGQQAPQQQQTAGGPGATGDNSGYSYGQPPATT 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                            XXXXXXXXXXXXXXXXXXX    NVANA QDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQDGYGGNYHAXXXXXXXXXXXXXXXXXXXXXXXNVANATQDGLNSYGSQGDSS 487

Query: 181 QTVPPA--QPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPA  QPSSVSQQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAPQPSSVSQQGYSANQQPSPNPGSY 518

[Close]

BLAST of Carg23969 vs. NCBI nr
Match: XP_023536823.1 (far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 9.4e-53
Identity = 188/209 (89.95%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQTRPPSSWGPPGAP MQQPGYGYGQQGGYS         XXXXXXXXXXX
Sbjct: 315 MSGGYNQQGYQTRPPSSWGPPGAPSMQQPGYGYGQQGGYSXXXXXXXXXXXXXXXXXXXX 374

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
                   DQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXX  DNSGYSYGQPQA X
Sbjct: 375 XXXXXXXXDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXXXDNSGYSYGQPQAXX 434

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 494

Query: 181 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPAQPSSVSQQGYGASQQPSPNPGSY
Sbjct: 495 QTVPPAQPSSVSQQGYGASQQPSPNPGSY 523

[Close]

BLAST of Carg23969 vs. TAIR10
Match: AT2G25970.1 (KH domain-containing protein)

HSP 1 Score: 46.2 bits (108), Expect = 5.2e-05
Identity = 24/32 (75.00%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 1   MSGGYNQQ-GYQTRPPSSWGPPGAPPMQQPGY 32
           M GGY QQ GYQ RPPSSW PPG PP  QPGY
Sbjct: 312 MGGGYPQQGGYQARPPSSWAPPGGPP-AQPGY 342

[Close]

BLAST of Carg23969 vs. TrEMBL
Match: tr|A0A1S3B9Y5|A0A1S3B9Y5_CUCME (far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.2e-61
Identity = 155/210 (73.81%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYNM            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNMSQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQST+PPNQPATQGSGYDY                 TGDNSGYSYGQP AS 
Sbjct: 368 SGGYASNWDQSTIPPNQPATQGSGYDYYGQQAPQQQQAAGGPGATGDNSGYSYGQPPAST 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                   XXXXXX     XXXXXXXXXXXXXXXXX NYGNVANAAQDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQXXXXXXYHAPQXXXXXXXXXXXXXXXXXTNYGNVANAAQDGLNSYGSQGDSS 487

Query: 181 QTVPP-AQPSSVSQQGYGASQQPSPNPGSY 210
           QTVPP AQPSSV QQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAQPSSVGQQGYSANQQPSPNPGSY 517

[Close]

BLAST of Carg23969 vs. TrEMBL
Match: tr|A0A0A0LKT6|A0A0A0LKT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.4e-57
Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQXXXXXXXXXXX 60
           MSGGYNQQGYQ RPPSSWGPPGAPPMQQP YGYGQQGGYS PSSQYN+            
Sbjct: 308 MSGGYNQQGYQARPPSSWGPPGAPPMQQPNYGYGQQGGYSAPSSQYNISQPPYQGYSQPA 367

Query: 61  SGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQASX 120
           SGGYASNWDQSTVPPNQPATQGSGYDY                 TGDNSGYSYGQP A+ 
Sbjct: 368 SGGYASNWDQSTVPPNQPATQGSGYDYYGQQAPQQQQTAGGPGATGDNSGYSYGQPPATT 427

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDSS 180
                            XXXXXXXXXXXXXXXXXXX    NVANA QDG+NSY SQGDSS
Sbjct: 428 YNQQGYSQDGYGGNYHAXXXXXXXXXXXXXXXXXXXXXXXNVANATQDGLNSYGSQGDSS 487

Query: 181 QTVPPA--QPSSVSQQGYGASQQPSPNPGSY 210
           QTVPPA  QPSSVSQQGY A+QQPSPNPGSY
Sbjct: 488 QTVPPAAPQPSSVSQQGYSANQQPSPNPGSY 518

[Close]

BLAST of Carg23969 vs. TrEMBL
Match: tr|W9R3G4|W9R3G4_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_019523 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 118/205 (57.56%), Postives = 127/205 (61.95%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNM-QXXXXXXXXXX 60
           MSGGY QQGYQ RPP+SWGPPGAPP QQPGYGYGQ G YSGPSSQYNM Q          
Sbjct: 309 MSGGYPQQGYQARPPTSWGPPGAPPTQQPGYGYGQPGSYSGPSSQYNMPQHSYPGYPPQP 368

Query: 61  XSGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQAS 120
            SGGY S+WDQSTVPP+Q  + G GYDY                   DN+GY+YGQ  AS
Sbjct: 369 TSGGYPSSWDQSTVPPSQQTSHGGGYDYYSQQAPTHQQQNPGAAAPADNTGYNYGQTGAS 428

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDGINSYESQGDS 180
             XXXXXXXXXXXXXXXX X       XXXXXXXXXX              +SY SQGDS
Sbjct: 429 GYXXXXXXXXXXXXXXXXPXSGYGQPPXXXXXXXXXXXXXXXXXXXXXXXTSSYGSQGDS 488

Query: 181 SQTVPPAQPSSVSQQGYGASQQPSP 205
           +Q  P   P+S  QQGY  S QPSP
Sbjct: 489 TQAPPSVPPTSAGQQGYNTS-QPSP 512

[Close]

BLAST of Carg23969 vs. TrEMBL
Match: tr|A0A2P6Q185|A0A2P6Q185_ROSCH (Putative K domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0310631 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 111/212 (52.36%), Postives = 125/212 (58.96%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYN-MQXXXXXXXXXX 60
           M+GGY+QQGYQ RPP+ W P G PPMQQPGYGYGQ G YSG + QYN  Q          
Sbjct: 306 MAGGYSQQGYQARPPTGWAPSG-PPMQQPGYGYGQSGAYSGTTPQYNASQPSYPGYPPQP 365

Query: 61  XSGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQAS 120
            SGGY +NWDQS V P Q  +Q  GYDY                   DN+ Y+YGQP  S
Sbjct: 366 ASGGYPTNWDQSAVAPTQQTSQAGGYDYYSQQPSYQQQNPGGPAAPADNASYNYGQPPIS 425

Query: 121 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQD-GINSYESQG 180
                            XXXXXXXXXXXXXXXXXXX   NYGNV+N A D   +SY SQG
Sbjct: 426 GYNQQGQGYPQDGYGGYXXXXXXXXXXXXXXXXXXXPAANYGNVSNPAPDTHTSSYGSQG 485

Query: 181 DSSQTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           +S+Q  PP QP+   QQ Y A+QQPSPNP SY
Sbjct: 486 ESTQ-APPVQPAPGGQQAYSATQQPSPNPASY 515

[Close]

BLAST of Carg23969 vs. TrEMBL
Match: tr|B9INI7|B9INI7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G055300v3 PE=4 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-29
Identity = 126/211 (59.72%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 1   MSGGYNQQGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYN-MQXXXXXXXXXX 60
           M GGY QQGYQ RPP+SWGP   PPMQQ GYGY Q G Y G S+QYN  Q          
Sbjct: 310 MGGGYPQQGYQARPPTSWGPSSGPPMQQAGYGYMQAGAYPGASAQYNTSQPAYPGYPPQQ 369

Query: 61  XSGGYASNWDQSTVPPNQPATQGSGYDYXXXXXXXXXXXXXXXXXTGDNSGYSYGQPQAS 120
            SGGY  NWDQS+V  NQ   Q  GYDY  XXXXXXXXXXXXXXX  D +GY+Y Q  AS
Sbjct: 370 PSGGYPPNWDQSSVSANQ---QNQGYDYYSXXXXXXXXXXXXXXXPADGTGYNYSQAPAS 429

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYGNVANAAQDG-INSYESQGD 180
              XXXXXXXXXXXXXXXXXXXXX             P+Y NVAN AQ+G   SY +QGD
Sbjct: 430 GYNXXXXXXXXXXXXXXXXXXXXXPPPYDQQQGYTSAPSYSNVANPAQEGHAPSYGAQGD 489

Query: 181 SSQTVPPAQPSSVSQQGYGASQQPSPNPGSY 210
           S+Q    +QPS++ QQGY   QQPSPNP SY
Sbjct: 490 SAQ--GSSQPSAMGQQGYSTGQQPSPNPASY 515

The following BLAST results are available for this feature:

BLAST of Carg23969 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951946.1	5.5e-69	100.00	far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022951945.1	5.5e-69	100.00	far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_008444487.1	9.4e-61	73.81	PREDICTED: far upstream element-binding protein 1 [Cucumis melo]	[more]
XP_004142921.1	2.2e-57	69.67	PREDICTED: far upstream element-binding protein 1 [Cucumis sativus] >KGN62398.1 ...	[more]
XP_023536823.1	9.4e-53	89.95	far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg23969 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25970.1	5.2e-05	75.00	KH domain-containing protein	[more]

BLAST of Carg23969 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23969 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9Y5\|A0A1S3B9Y5_CUCME	6.2e-61	73.81	far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 P...	[more]
tr\|A0A0A0LKT6\|A0A0A0LKT6_CUCSA	1.4e-57	69.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1	[more]
tr\|W9R3G4\|W9R3G4_9ROSA	2.7e-32	57.56	Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_0195...	[more]
tr\|A0A2P6Q185\|A0A2P6Q185_ROSCH	3.0e-31	52.36	Putative K domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6...	[more]
tr\|B9INI7\|B9INI7_POPTR	4.8e-29	59.72	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G055300v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23969-RA	Carg23969-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..129
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 1..383
None	No IPR available	PANTHER	PTHR10288:SF171	F17H15.1/F17H15.1	coord: 1..383

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23969	ClCG08G016950	Watermelon (Charleston Gray)	carwcgB0674

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23969	Wax gourd	carwgoB0819
Carg23969	Silver-seed gourd	carcarB223
Carg23969	Cucumber (Gy14) v2	carcgybB0694
Carg23969	Cucumber (Gy14) v1	carcgyB0780
Carg23969	Cucurbita maxima (Rimu)	carcmaB0975
Carg23969	Cucurbita maxima (Rimu)	carcmaB0976
Carg23969	Cucurbita moschata (Rifu)	carcmoB0948
Carg23969	Cucurbita moschata (Rifu)	carcmoB0949
Carg23969	Cucurbita pepo (Zucchini)	carcpeB0975
Carg23969	Cucurbita pepo (Zucchini)	carcpeB0976
Carg23969	Wild cucumber (PI 183967)	carcpiB0732
Carg23969	Cucumber (Chinese Long) v2	carcuB0717
Carg23969	Cucumber (Chinese Long) v3	carcucB0735
Carg23969	Bottle gourd (USVL1VR-Ls)	carlsiB637
Carg23969	Melon (DHL92) v3.5.1	carmeB0696
Carg23969	Melon (DHL92) v3.6.1	carmedB0709
Carg23969	Watermelon (97103) v1	carwmB0695
Carg23969	Watermelon (97103) v2	carwmbB0726