Carg15291 (gene) Silver-seed gourd

Overview
NameCarg15291
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase RMA1H1-like
LocationCucurbita_argyrosperma_scaffold_085 : 190703 .. 192775 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCAACTCTCTCTCCCTTCTCGGTTTTCTTTTCCATCTCCAACTTTTTCAGTTTTGCATTAACTTTGCCTCTTTACGAGGAAGGCACTGCAAGCAAACTGCCGATTCTCCCTCCCTCTCAGGTGAACCACTGAATTTGAACTTTCATGATTACTTCTACATGTTTTTTTTTTCTTCGCAACTACGGTTTTCTTCGTTTCGCTGTGAATTTGTCCGTGGAGGTCGAAGTTTTGACGATTCTTTCCATTTGTTAATTGATCCTTTTTCCTTTAAGTTTCTTTCATTCCGGACAAGTGAGAAAGGAAAGTGGTGTCTCGATTCTGGAGTTGATAAATCAATAGGTTTCTGCTTGCATATCATTAATTTGCGCTGTAGGTCGAATTGAACGGTAGCGTGATGGGTTAATAAAAGCACACTGAGGAGACCATGTGTCAGGATTACATTTTTCTTCTTGGCGAACTAGTTAGATTATCACTTAACGTTCATGTATTTATTCGTTTTGGAATATGAATAAATCTGGGTATGCTGGCCCTTCTTGTATTATGCTCGTGGTTAGTTCTAACAGGTCTCTATTTGACTACTTTAATTGCTAATTCATTACAATAGCTGATGAAGTTCTACAAAGCGTCGTATCTAAACACATCAGTAAATCAATTTGAGTTCACCTTTTGGCTGATTGATTCTACTGGGCTTTGAGTTTTTTTAGAATTTTTTCCAGTTCTGGTTGGTTTGGTTTGTCCGTAACCTGTTAATAGTCTGTTTCATTTTGGGGTTCCCATTCAGTAATTAAACTAGGATGAGTTAATTGGGCATGATCGAACTCTTTGAAGTAAAGTCGGTCAGATGGTTGGTGGCTTCCAGTTGGGTTTTAGGTGTTTTAACTGATTCACTAACCTTCTGTTTTGGTGTTCTGTAAATGTTCTATTGTTTTCAACTTTCTTCCCTCTAACCTTAAACTTAGCTTCAAATTCTGCTTTATAGTTAATGTTTACCATTTGAGGTCCCACGTTTGATGGGAATGAAACATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGTATTTTAAAACCATAAGGCTGACAACGATATGTAACGGGTCAAAGCAAACAATATCTGCTAGCGTGGGCTTTGGCTGTTACAAATGAAATCAGAGCCAGACATCAGGTAGTGTGCCAGCGAGGACGTTGGTCTCTAAGGAAGTGGATTGTGAGATTCCACATATGTTTTAAAATCGTGAGGCTGACGATGATACGTAACGAAACAAAGCGAACAATATCTACGATCAATGAGATTGGGCGGTTACAGCCTAATTCCAGATTCCAGACGAGAAATTTGATGTCTGATTTGTTTTTGTGTGCTTTTCCAGGAAATAACTGGAGTTGCTTGATCAATTCATGGCCTATGAGCAGTACTTTGTGCAAGGATGGAAACACTACAACGGTTGCTTTGATTGTAACATCTGCTTTGACTTTGCCCATGAGCCAGTGGTAACTCTCTGCGGCCACTTATACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCTCTAGCCATTGACGAGCACCCACAGTGCCCGGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGTCGTGGCCGAACGGCCGAGCAAGTCGAGCCTGAAGCTAAAGCAATGCATCGTGACATTGATATACCTCCTAGACCTTCAGCTTGTGGTAACCAGATGCTTGCTACTCCCAGCACACACCAGCAGCAACTTCCATATCGAAATCCTTACCAGCGACCGAACCACGACCCCGTTCTTTTTGGGAATCATGAAGAAGATTCAGCAGCCTCTTTGCTAAACCTTGGGAGAACATCATTCAGTGGTTTTGACCATCGGGTGGCAGGAATGATTGGCAATTTCGTGTATGCGAGGGTCTTTGGGAACTCAGACAACTTAAACTCTTACTTGGGAACAGGGAGCAGAAGGGATGGGTTGAGAAGACAGGAAATGCAGGTAGCCAAGTCATTGAACAGAATCTCCATTTTCCTCTTCTGCTGTGTAATTCTATGCGTTCTTGTCTTC

mRNA sequence

TTATCAACTCTCTCTCCCTTCTCGGTTTTCTTTTCCATCTCCAACTTTTTCAGTTTTGCATTAACTTTGCCTCTTTACGAGGAAGGCACTGCAAGCAAACTGCCGATTCTCCCTCCCTCTCAGTACTTTGTGCAAGGATGGAAACACTACAACGGTTGCTTTGATTGTAACATCTGCTTTGACTTTGCCCATGAGCCAGTGGTAACTCTCTGCGGCCACTTATACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCTCTAGCCATTGACGAGCACCCACAGTGCCCGGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGTCGTGGCCGAACGGCCGAGCAAGTCGAGCCTGAAGCTAAAGCAATGCATCGTGACATTGATATACCTCCTAGACCTTCAGCTTGTGGTAACCAGATGCTTGCTACTCCCAGCACACACCAGCAGCAACTTCCATATCGAAATCCTTACCAGCGACCGAACCACGACCCCGTTCTTTTTGGGAATCATGAAGAAGATTCAGCAGCCTCTTTGCTAAACCTTGGGAGAACATCATTCAGTGGTTTTGACCATCGGGTGGCAGGAATGATTGGCAATTTCGTGTATGCGAGGGTCTTTGGGAACTCAGACAACTTAAACTCTTACTTGGGAACAGGGAGCAGAAGGGATGGGTTGAGAAGACAGGAAATGCAGGTAGCCAAGTCATTGAACAGAATCTCCATTTTCCTCTTCTGCTGTGTAATTCTATGCGTTCTTGTCTTC

Coding sequence (CDS)

TTATCAACTCTCTCTCCCTTCTCGGTTTTCTTTTCCATCTCCAACTTTTTCAGTTTTGCATTAACTTTGCCTCTTTACGAGGAAGGCACTGCAAGCAAACTGCCGATTCTCCCTCCCTCTCAGTACTTTGTGCAAGGATGGAAACACTACAACGGTTGCTTTGATTGTAACATCTGCTTTGACTTTGCCCATGAGCCAGTGGTAACTCTCTGCGGCCACTTATACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCTCTAGCCATTGACGAGCACCCACAGTGCCCGGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGTCGTGGCCGAACGGCCGAGCAAGTCGAGCCTGAAGCTAAAGCAATGCATCGTGACATTGATATACCTCCTAGACCTTCAGCTTGTGGTAACCAGATGCTTGCTACTCCCAGCACACACCAGCAGCAACTTCCATATCGAAATCCTTACCAGCGACCGAACCACGACCCCGTTCTTTTTGGGAATCATGAAGAAGATTCAGCAGCCTCTTTGCTAAACCTTGGGAGAACATCATTCAGTGGTTTTGACCATCGGGTGGCAGGAATGATTGGCAATTTCGTGTATGCGAGGGTCTTTGGGAACTCAGACAACTTAAACTCTTACTTGGGAACAGGGAGCAGAAGGGATGGGTTGAGAAGACAGGAAATGCAGGTAGCCAAGTCATTGAACAGAATCTCCATTTTCCTCTTCTGCTGTGTAATTCTATGCGTTCTTGTCTTC

Protein sequence

LSTLSPFSVFFSISNFFSFALTLPLYEEGTASKLPILPPSQYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF
Homology
[Close]
BLAST of Carg15291 vs. NCBI nr
Match: XP_022925786.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022925787.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata])

HSP 1 Score: 473.8 bits (1218), Expect = 3.8e-130
Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0 

Query: 41  QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 100
           QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP
Sbjct: 5   QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 64

Query: 101 VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 160
           VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP
Sbjct: 65  VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 124

Query: 161 YRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 220
           YRNPYQRPNHDPVLFGN+EEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL
Sbjct: 125 YRNPYQRPNHDPVLFGNYEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 184

Query: 221 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF
Sbjct: 185 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 226

[Close]
BLAST of Carg15291 vs. NCBI nr
Match: XP_023543343.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo] >XP_023543345.1 E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.2 bits (1214), Expect = 1.1e-129
Identity = 220/222 (99.10%), Postives = 222/222 (100.00%), Query Frame = 0 

Query: 41  QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 100
           QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHL+CWPCIYKWLHVQSASLAIDEHPQCP
Sbjct: 5   QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLFCWPCIYKWLHVQSASLAIDEHPQCP 64

Query: 101 VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 160
           VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP
Sbjct: 65  VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 124

Query: 161 YRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 220
           YRNPYQRPNHDPVLFGN+EEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL
Sbjct: 125 YRNPYQRPNHDPVLFGNYEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 184

Query: 221 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF
Sbjct: 185 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 226

[Close]
BLAST of Carg15291 vs. NCBI nr
Match: XP_022979030.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022979031.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-128
Identity = 219/222 (98.65%), Postives = 220/222 (99.10%), Query Frame = 0 

Query: 41  QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 100
           QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP
Sbjct: 5   QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 64

Query: 101 VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 160
           VCKADISHTTMVPLYG GRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP
Sbjct: 65  VCKADISHTTMVPLYGCGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 124

Query: 161 YRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 220
           YRNPYQRPNHDPVLFGN+EEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL
Sbjct: 125 YRNPYQRPNHDPVLFGNYEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 184

Query: 221 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           NSYLGTGSRRDGLRR EMQVAKSLNRISIFLFCCVILCVLVF
Sbjct: 185 NSYLGTGSRRDGLRRHEMQVAKSLNRISIFLFCCVILCVLVF 226

[Close]
BLAST of Carg15291 vs. NCBI nr
Match: XP_004134706.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 7.5e-110
Identity = 195/234 (83.33%), Postives = 205/234 (87.61%), Query Frame = 0 

Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 24  QYFAQGWKHVSGTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 83

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+TAE+VEPE KAMH DI+IPPRPSACGNQ+LATP
Sbjct: 84  IDEHPQCPVCKADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATP 143

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EEDSA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 144 STHQQQLPYRNPYQRPNHDPLLFANYEEDSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 203

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 204 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 257

[Close]
BLAST of Carg15291 vs. NCBI nr
Match: XP_004134707.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X2 [Cucumis sativus] >KGN49224.1 Rnf5 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 7.5e-110
Identity = 195/234 (83.33%), Postives = 205/234 (87.61%), Query Frame = 0 

Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 5   QYFAQGWKHVSGTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 64

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+TAE+VEPE KAMH DI+IPPRPSACGNQ+LATP
Sbjct: 65  IDEHPQCPVCKADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATP 124

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EEDSA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 125 STHQQQLPYRNPYQRPNHDPLLFANYEEDSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 184

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 185 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]
BLAST of Carg15291 vs. TAIR10
Match: AT4G27470.1 (RING membrane-anchor 3)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-42
Identity = 95/225 (42.22%), Postives = 127/225 (56.44%), Query Frame = 0 

Query: 46  GWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHP-QCPVCKA 105
           G  + +GCFDCNIC D AH+PVVTLCGHL+CWPCIYKWLHVQ +S+++D+H   CPVCK+
Sbjct: 34  GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKS 93

Query: 106 DISHTTMVPLYGRGRTAEQVEPEAK---AMHRDIDIPPRPSACGNQMLATPSTHQQQLPY 165
           +I+ T++VPLYGRG ++      +K   A+  DI   P PSA  N + +  S        
Sbjct: 94  NITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSL------- 153

Query: 166 RNPYQRPNHDPVLFGNHEED----SAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNS 225
            NP  +       F NH+      +     +L       F + V GM G+ VY R+FG  
Sbjct: 154 -NPSLQHQTLSXSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTF 213

Query: 226 DNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
            N  +      R        MQ  KSLNR+SIF  CC+ILC+L+F
Sbjct: 214 TNTIAQPYQSQRM-------MQREKSLNRVSIFFLCCIILCLLLF 243

[Close]
BLAST of Carg15291 vs. TAIR10
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-30
Identity = 89/243 (36.63%), Postives = 120/243 (49.38%), Query Frame = 0 

Query: 15  NFFSFALTLPLYEEGT---ASKLPILPPSQYFVQGWKHYNGCFDCNICFDFAHEPVVTLC 74
           +F   AL   LY EG     SK P   P    V      +  FDCNIC D   EPVVTLC
Sbjct: 6   SFEDAALLGELYGEGAFCFKSKKP--EPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLC 65

Query: 75  GHLYCWPCIYKWLHVQSASLA--IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAK 134
           GHL+CWPCI+KWL VQS S +     H QCPVCK+ +SH+T+VPLYGRGR   Q E +  
Sbjct: 66  GHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS 125

Query: 135 AMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNL 194
              R +    R     +   +T     Q++ + +P +   + PV          + +++ 
Sbjct: 126 VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQE--GYYPV----------SGVMSS 185

Query: 195 GRTSFSGFDHRVAGMIGNFVYARVFGN--SDNL---NSYLGTGSRRDGLRRQEMQVAKSL 248
              S+S     V  M+G  V  R+FG    D     ++Y   G+    +RR+ MQ  KSL
Sbjct: 186 NSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSL 234

[Close]
BLAST of Carg15291 vs. TAIR10
Match: AT4G28270.1 (RING membrane-anchor 2)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 74/219 (33.79%), Postives = 109/219 (49.77%), Query Frame = 0 

Query: 52  GCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS-LAIDEH------PQCPVCKA 111
           G FDCNIC D   +PVVTLCGHL+CWPCI+KW +  + S   +D++      P+CPVCK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 112 DISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNP 171
           D+S  T+VP+YGRG+         KA     ++P RP+     +        +    R  
Sbjct: 77  DVSEATLVPIYGRGQ---------KAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQRYM 136

Query: 172 YQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFG-NSDNLNSY 231
           Y+ P  DPV+                            G++   VY R+FG +S N+  Y
Sbjct: 137 YRMP--DPVM----------------------------GVVCEMVYRRLFGESSSNMAPY 193

Query: 232 LGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
                R    RR+ MQ  +SL+R+ +FL C + +C+ +F
Sbjct: 197 RDMNVRS---RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]
BLAST of Carg15291 vs. TAIR10
Match: AT1G19310.1 (RING/U-box superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 54  FDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVP 113
           F+CNIC D A +P+VTLCGHL+CWPC+YKWLH+ S S        CPVCKA I    +VP
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS------KDCPVCKAVIEEDRLVP 80

Query: 114 LYGRGRTAEQVEPEAKAMHRDIDIPPRPS 143
           LYGRG+++   +P +K++   +++P RPS
Sbjct: 81  LYGRGKSS--ADPRSKSI-PGLEVPNRPS 100

[Close]
BLAST of Carg15291 vs. TAIR10
Match: AT1G74990.1 (RING/U-box superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 54  FDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVP 113
           F CNIC + A EP+VTLCGHL+CWPC+YKWLH  S S        CPVCKA +   T+VP
Sbjct: 17  FGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS------NHCPVCKALVKEDTLVP 76

Query: 114 LYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPV 173
           LYG G+ +   +P +K ++  + +P RP+A   +  A P   Q+           +H   
Sbjct: 77  LYGMGKPSS--DPRSK-LNSGVTVPNRPAATRTE-TARPRLEQR-----------HHGSS 125

Query: 174 LFGNHEEDSA 184
            FG H   +A
Sbjct: 137 FFGGHSSFAA 125

[Close]
BLAST of Carg15291 vs. Swiss-Prot
Match: sp|Q6R567|RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.9e-41
Identity = 98/228 (42.98%), Postives = 134/228 (58.77%), Query Frame = 0 

Query: 48  KHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASL--AIDEHPQCPVCKAD 107
           ++ +G FDCNIC D  HEPV+TLCGHLYCWPCIYKW++ QS S   +  + PQCPVCKA+
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 108 ISHTTMVPLYGRGRTAEQVEP-EAKAMHRDIDIPPRPSA--CGNQ-MLATPSTHQQQLPY 167
           +S  T++PLYGRG   +  +P E KA +  I IP RP +  CG   +L T  ++  QL  
Sbjct: 93  VSEKTLIPLYGRG--GQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQ 152

Query: 168 RNPYQRPN--HDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDN 227
           R  YQ+ +    P   G++    ++ +L+ G  + +   H    MIG   YAR+FGNS  
Sbjct: 153 RRGYQQQSQTRQPAYQGSY---MSSPMLSPGGATANMLQH---SMIGEVAYARIFGNSST 212

Query: 228 L-----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
                 NSY    S    +RRQ  Q  +SL RI  FLFCC + C+++F
Sbjct: 213 TMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]
BLAST of Carg15291 vs. Swiss-Prot
Match: sp|Q8GUK7|RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.0e-41
Identity = 95/225 (42.22%), Postives = 127/225 (56.44%), Query Frame = 0 

Query: 46  GWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHP-QCPVCKA 105
           G  + +GCFDCNIC D AH+PVVTLCGHL+CWPCIYKWLHVQ +S+++D+H   CPVCK+
Sbjct: 34  GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKS 93

Query: 106 DISHTTMVPLYGRGRTAEQVEPEAK---AMHRDIDIPPRPSACGNQMLATPSTHQQQLPY 165
           +I+ T++VPLYGRG ++      +K   A+  DI   P PSA  N + +  S        
Sbjct: 94  NITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSL------- 153

Query: 166 RNPYQRPNHDPVLFGNHEED----SAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNS 225
            NP  +       F NH+      +     +L       F + V GM G+ VY R+FG  
Sbjct: 154 -NPSLQHQTLSXSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTF 213

Query: 226 DNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
            N  +      R        MQ  KSLNR+SIF  CC+ILC+L+F
Sbjct: 214 TNTIAQPYQSQRM-------MQREKSLNRVSIFFLCCIILCLLLF 243

[Close]
BLAST of Carg15291 vs. Swiss-Prot
Match: sp|O64425|RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-29
Identity = 89/243 (36.63%), Postives = 120/243 (49.38%), Query Frame = 0 

Query: 15  NFFSFALTLPLYEEGT---ASKLPILPPSQYFVQGWKHYNGCFDCNICFDFAHEPVVTLC 74
           +F   AL   LY EG     SK P   P    V      +  FDCNIC D   EPVVTLC
Sbjct: 6   SFEDAALLGELYGEGAFCFKSKKP--EPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLC 65

Query: 75  GHLYCWPCIYKWLHVQSASLA--IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAK 134
           GHL+CWPCI+KWL VQS S +     H QCPVCK+ +SH+T+VPLYGRGR   Q E +  
Sbjct: 66  GHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS 125

Query: 135 AMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNL 194
              R +    R     +   +T     Q++ + +P +   + PV          + +++ 
Sbjct: 126 VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQE--GYYPV----------SGVMSS 185

Query: 195 GRTSFSGFDHRVAGMIGNFVYARVFGN--SDNL---NSYLGTGSRRDGLRRQEMQVAKSL 248
              S+S     V  M+G  V  R+FG    D     ++Y   G+    +RR+ MQ  KSL
Sbjct: 186 NSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSL 234

[Close]
BLAST of Carg15291 vs. Swiss-Prot
Match: sp|P93030|RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 74/219 (33.79%), Postives = 109/219 (49.77%), Query Frame = 0 

Query: 52  GCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS-LAIDEH------PQCPVCKA 111
           G FDCNIC D   +PVVTLCGHL+CWPCI+KW +  + S   +D++      P+CPVCK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 112 DISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNP 171
           D+S  T+VP+YGRG+         KA     ++P RP+     +        +    R  
Sbjct: 77  DVSEATLVPIYGRGQ---------KAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQRYM 136

Query: 172 YQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFG-NSDNLNSY 231
           Y+ P  DPV+                            G++   VY R+FG +S N+  Y
Sbjct: 137 YRMP--DPVM----------------------------GVVCEMVYRRLFGESSSNMAPY 193

Query: 232 LGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
                R    RR+ MQ  +SL+R+ +FL C + +C+ +F
Sbjct: 197 RDMNVRS---RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]
BLAST of Carg15291 vs. Swiss-Prot
Match: sp|Q99942|RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 54  FDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVP 113
           F+CNIC + A E VV++CGHLYCWPC+++WL  +       E  +CPVCKA IS   +VP
Sbjct: 25  FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PERQECPVCKAGISREKVVP 84

Query: 114 LYGRGRTAEQVEPEAKAMHRDIDIPPRP 142
           LYGRG    Q +P  K        PPRP
Sbjct: 85  LYGRGSQKPQ-DPRLKT-------PPRP 98

[Close]
BLAST of Carg15291 vs. TrEMBL
Match: tr|A0A0A0KK60|A0A0A0KK60_CUCSA (Rnf5 OS=Cucumis sativus OX=3659 GN=Csa_6G517320 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 5.0e-110
Identity = 195/234 (83.33%), Postives = 205/234 (87.61%), Query Frame = 0 

Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 5   QYFAQGWKHVSGTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 64

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+TAE+VEPE KAMH DI+IPPRPSACGNQ+LATP
Sbjct: 65  IDEHPQCPVCKADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATP 124

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EEDSA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 125 STHQQQLPYRNPYQRPNHDPLLFANYEEDSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 184

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 185 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]
BLAST of Carg15291 vs. TrEMBL
Match: tr|A0A1S3AZB8|A0A1S3AZB8_CUCME (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103484523 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.2e-108
Identity = 194/234 (82.91%), Postives = 204/234 (87.18%), Query Frame = 0 

Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 5   QYFAQGWKHVSGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 64

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+ AE+VE EAKAMHRDI+IPPRPSACGNQ+LATP
Sbjct: 65  IDEHPQCPVCKADISHTTMVPLYGRGQMAEEVELEAKAMHRDINIPPRPSACGNQILATP 124

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EE SA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 125 STHQQQLPYRNPYQRPNHDPLLFANYEEHSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 184

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 185 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]
BLAST of Carg15291 vs. TrEMBL
Match: tr|A0A1B1LZW2|A0A1B1LZW2_BETPL (ZFP9 OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.2e-81
Identity = 155/235 (65.96%), Postives = 174/235 (74.04%), Query Frame = 0 

Query: 42  YFVQGWK----------HYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASL 101
           YF + WK          + NGCFDCNIC DFA+EPVVTLCGHLYCWPCIYKWLHVQSASL
Sbjct: 6   YFAREWKSIQGVATESENSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASL 65

Query: 102 AIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLAT 161
           A DEHPQCPVCKADISHTTMVPLYGRG+T  + E E KA HRD+ IPPRP+ACG Q L +
Sbjct: 66  ASDEHPQCPVCKADISHTTMVPLYGRGQTLNEDEVEGKASHRDMAIPPRPAACGTQTLIS 125

Query: 162 PSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYA 221
            S   QQLPYRNPYQ  +++P  +G+HEEDS +  LNLG  +  GF H V GM G  VYA
Sbjct: 126 TSHTGQQLPYRNPYQNQHYNPHPYGSHEEDSTSPWLNLG-GAMPGFHHPVVGMFGEMVYA 185

Query: 222 RVFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           RVFGNS +L    NSY   GS    LRRQEMQ  KSLNRISIFLFCC +LC++VF
Sbjct: 186 RVFGNSASLYSYPNSYHLMGSSNPRLRRQEMQADKSLNRISIFLFCCFLLCLMVF 239

[Close]
BLAST of Carg15291 vs. TrEMBL
Match: tr|A0A067GKT9|A0A067GKT9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026346mg PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.4e-80
Identity = 151/236 (63.98%), Postives = 172/236 (72.88%), Query Frame = 0 

Query: 41  QYFVQGWK----------HYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS 100
           QYF + WK          +YNGCFDCNIC DFA++PVVTLCGHLYCWPCIYKWLHVQSAS
Sbjct: 5   QYFAREWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSAS 64

Query: 101 LAIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLA 160
           LA DEHPQCPVCKADISHTTMVPLYGRG+T  + EPE K  HR   IPPRP A GNQ L 
Sbjct: 65  LASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPAFGNQALL 124

Query: 161 TPSTHQ-QQLPYRNPYQRPNHDP---VLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIG 220
            P+++  QQLPYRNPYQ  N+DP     +G  E +S + LLNLG T+ SGF H V GM G
Sbjct: 125 YPTSNTGQQLPYRNPYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMFG 184

Query: 221 NFVYARVFGNSDNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
             VYA VFGNS++L +Y  +      LRR EMQ  KSLNRISIFLFCC +LC++VF
Sbjct: 185 EMVYASVFGNSESLYTYPNSYHSNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240

[Close]
BLAST of Carg15291 vs. TrEMBL
Match: tr|V4UJS8|V4UJS8_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016469mg PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.4e-80
Identity = 151/236 (63.98%), Postives = 171/236 (72.46%), Query Frame = 0 

Query: 41  QYFVQGWK----------HYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS 100
           QYF + WK          +YNGCFDCNIC DFA+EPVVTLCGHLYCWPCIYKWLHVQSAS
Sbjct: 5   QYFAREWKSIASAATGSENYNGCFDCNICLDFAYEPVVTLCGHLYCWPCIYKWLHVQSAS 64

Query: 101 LAIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLA 160
           LA DEHPQCPVCKADISHTTMVPLYGRG+T  + EPE K  HR   IPPRP A GNQ L 
Sbjct: 65  LASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPAFGNQALL 124

Query: 161 TPSTHQ-QQLPYRNPYQRPNHDP---VLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIG 220
            P+++  QQ PYRNPYQ  N+DP     +G  E +S + LLNLG T+ SGF H V GM G
Sbjct: 125 YPTSNTGQQRPYRNPYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMFG 184

Query: 221 NFVYARVFGNSDNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
             VYA VFGNS++L +Y  +      LRR EMQ  KSLNRISIFLFCC +LC++VF
Sbjct: 185 EMVYASVFGNSESLYTYPNSYHSNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240

The following BLAST results are available for this feature:
BLAST of Carg15291 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022925786.13.8e-13099.55E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022925787.1 E3 ... [more]
XP_023543343.11.1e-12999.10E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo] >XP_023543345... [more]
XP_022979030.11.2e-12898.65E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022979031.1 E3 ub... [more]
XP_004134706.17.5e-11083.33PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucumis sativus][more]
XP_004134707.17.5e-11083.33PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X2 [Cucumis sativus] ... [more]
BLAST of Carg15291 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27470.12.8e-4242.22RING membrane-anchor 3[more]
AT4G03510.12.5e-3036.63RING membrane-anchor 1[more]
AT4G28270.11.9e-2733.79RING membrane-anchor 2[more]
AT1G19310.12.2e-2351.69RING/U-box superfamily protein[more]
AT1G74990.11.1e-2240.77RING/U-box superfamily protein[more]
BLAST of Carg15291 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6R567|RMA1_CAPAN3.9e-4142.98E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=... [more]
sp|Q8GUK7|RMA3_ARATH5.0e-4142.22E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV... [more]
sp|O64425|RMA1_ARATH4.4e-2936.63E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV... [more]
sp|P93030|RMA2_ARATH3.5e-2633.79E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV... [more]
sp|Q99942|RNF5_HUMAN1.3e-1748.86E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1[more]
BLAST of Carg15291 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KK60|A0A0A0KK60_CUCSA5.0e-11083.33Rnf5 OS=Cucumis sativus OX=3659 GN=Csa_6G517320 PE=4 SV=1[more]
tr|A0A1S3AZB8|A0A1S3AZB8_CUCME1.2e-10882.91E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103484523 ... [more]
tr|A0A1B1LZW2|A0A1B1LZW2_BETPL2.2e-8165.96ZFP9 OS=Betula platyphylla OX=78630 PE=2 SV=1[more]
tr|A0A067GKT9|A0A067GKT9_CITSI2.4e-8063.98Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026346mg PE=4 SV=1[more]
tr|V4UJS8|V4UJS8_9ROSI5.4e-8063.98Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016469mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15291-RACarg15291-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 56..102
e-value: 2.7E-8
score: 43.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 56..103
score: 12.416
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 43..137
e-value: 5.9E-17
score: 63.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 56..102
e-value: 3.7E-8
score: 33.0
NoneNo IPR availablePANTHERPTHR12313RNF5coord: 49..262
NoneNo IPR availablePANTHERPTHR12313:SF6SUBFAMILY NOT NAMEDcoord: 49..262
NoneNo IPR availableCDDcd16745RING-HC_AtRMA_likecoord: 54..104
e-value: 6.08892E-25
score: 93.5227
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 50..116
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 71..80

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15291Cla009617Watermelon (97103) v1carwmB0545
Carg15291Csa6G517320Cucumber (Chinese Long) v2carcuB0578
Carg15291Csa1G073810Cucumber (Chinese Long) v2carcuB0575
Carg15291MELO3C002598Melon (DHL92) v3.5.1carmeB0551
Carg15291MELO3C007285Melon (DHL92) v3.5.1carmeB0554
Carg15291ClCG01G022960Watermelon (Charleston Gray)carwcgB0531
Carg15291CSPI06G34590Wild cucumber (PI 183967)carcpiB0584
Carg15291CSPI01G12070Wild cucumber (PI 183967)carcpiB0581
Carg15291Cucsa.046190Cucumber (Gy14) v1carcgyB0623
Carg15291CmaCh07G002460Cucurbita maxima (Rimu)carcmaB0766
Carg15291CmaCh03G012610Cucurbita maxima (Rimu)carcmaB0763
Carg15291CmaCh13G006490Cucurbita maxima (Rimu)carcmaB0761
Carg15291CmoCh07G002410Cucurbita moschata (Rifu)carcmoB0745
Carg15291CmoCh13G006670Cucurbita moschata (Rifu)carcmoB0739
Carg15291Lsi02G007470Bottle gourd (USVL1VR-Ls)carlsiB497
Carg15291Cp4.1LG20g04250Cucurbita pepo (Zucchini)carcpeB0776
Carg15291Cp4.1LG10g05010Cucurbita pepo (Zucchini)carcpeB0772
Carg15291CsGy1G012090Cucumber (Gy14) v2carcgybB0551
Carg15291CsGy6G034130Cucumber (Gy14) v2carcgybB0554
Carg15291MELO3C002598.2Melon (DHL92) v3.6.1carmedB0557
Carg15291MELO3C007285.2Melon (DHL92) v3.6.1carmedB0560
Carg15291CsaV3_6G050110Cucumber (Chinese Long) v3carcucB0585
Carg15291CsaV3_1G012230Cucumber (Chinese Long) v3carcucB0582
Carg15291Cla97C01G022840Watermelon (97103) v2carwmbB0571
Carg15291Bhi03G000323Wax gourdcarwgoB0657
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15291Carg07784Silver-seed gourdcarcarB507
Carg15291Carg21495Silver-seed gourdcarcarB509
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15291Cucurbita moschata (Rifu)carcmoB0742
Carg15291Cucurbita pepo (Zucchini)carcpeB0773
Carg15291Bottle gourd (USVL1VR-Ls)carlsiB496