Carg15291-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15291-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	Cucurbita_argyrosperma_scaffold_085 : 190703 .. 192775 (-)
Sequence length	786

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATCAACTCTCTCTCCCTTCTCGGTTTTCTTTTCCATCTCCAACTTTTTCAGTTTTGCATTAACTTTGCCTCTTTACGAGGAAGGCACTGCAAGCAAACTGCCGATTCTCCCTCCCTCTCAGGTGAACCACTGAATTTGAACTTTCATGATTACTTCTACATGTTTTTTTTTTCTTCGCAACTACGGTTTTCTTCGTTTCGCTGTGAATTTGTCCGTGGAGGTCGAAGTTTTGACGATTCTTTCCATTTGTTAATTGATCCTTTTTCCTTTAAGTTTCTTTCATTCCGGACAAGTGAGAAAGGAAAGTGGTGTCTCGATTCTGGAGTTGATAAATCAATAGGTTTCTGCTTGCATATCATTAATTTGCGCTGTAGGTCGAATTGAACGGTAGCGTGATGGGTTAATAAAAGCACACTGAGGAGACCATGTGTCAGGATTACATTTTTCTTCTTGGCGAACTAGTTAGATTATCACTTAACGTTCATGTATTTATTCGTTTTGGAATATGAATAAATCTGGGTATGCTGGCCCTTCTTGTATTATGCTCGTGGTTAGTTCTAACAGGTCTCTATTTGACTACTTTAATTGCTAATTCATTACAATAGCTGATGAAGTTCTACAAAGCGTCGTATCTAAACACATCAGTAAATCAATTTGAGTTCACCTTTTGGCTGATTGATTCTACTGGGCTTTGAGTTTTTTTAGAATTTTTTCCAGTTCTGGTTGGTTTGGTTTGTCCGTAACCTGTTAATAGTCTGTTTCATTTTGGGGTTCCCATTCAGTAATTAAACTAGGATGAGTTAATTGGGCATGATCGAACTCTTTGAAGTAAAGTCGGTCAGATGGTTGGTGGCTTCCAGTTGGGTTTTAGGTGTTTTAACTGATTCACTAACCTTCTGTTTTGGTGTTCTGTAAATGTTCTATTGTTTTCAACTTTCTTCCCTCTAACCTTAAACTTAGCTTCAAATTCTGCTTTATAGTTAATGTTTACCATTTGAGGTCCCACGTTTGATGGGAATGAAACATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGTATTTTAAAACCATAAGGCTGACAACGATATGTAACGGGTCAAAGCAAACAATATCTGCTAGCGTGGGCTTTGGCTGTTACAAATGAAATCAGAGCCAGACATCAGGTAGTGTGCCAGCGAGGACGTTGGTCTCTAAGGAAGTGGATTGTGAGATTCCACATATGTTTTAAAATCGTGAGGCTGACGATGATACGTAACGAAACAAAGCGAACAATATCTACGATCAATGAGATTGGGCGGTTACAGCCTAATTCCAGATTCCAGACGAGAAATTTGATGTCTGATTTGTTTTTGTGTGCTTTTCCAGGAAATAACTGGAGTTGCTTGATCAATTCATGGCCTATGAGCAGTACTTTGTGCAAGGATGGAAACACTACAACGGTTGCTTTGATTGTAACATCTGCTTTGACTTTGCCCATGAGCCAGTGGTAACTCTCTGCGGCCACTTATACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCTCTAGCCATTGACGAGCACCCACAGTGCCCGGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGTCGTGGCCGAACGGCCGAGCAAGTCGAGCCTGAAGCTAAAGCAATGCATCGTGACATTGATATACCTCCTAGACCTTCAGCTTGTGGTAACCAGATGCTTGCTACTCCCAGCACACACCAGCAGCAACTTCCATATCGAAATCCTTACCAGCGACCGAACCACGACCCCGTTCTTTTTGGGAATCATGAAGAAGATTCAGCAGCCTCTTTGCTAAACCTTGGGAGAACATCATTCAGTGGTTTTGACCATCGGGTGGCAGGAATGATTGGCAATTTCGTGTATGCGAGGGTCTTTGGGAACTCAGACAACTTAAACTCTTACTTGGGAACAGGGAGCAGAAGGGATGGGTTGAGAAGACAGGAAATGCAGGTAGCCAAGTCATTGAACAGAATCTCCATTTTCCTCTTCTGCTGTGTAATTCTATGCGTTCTTGTCTTC

mRNA sequence

TTATCAACTCTCTCTCCCTTCTCGGTTTTCTTTTCCATCTCCAACTTTTTCAGTTTTGCATTAACTTTGCCTCTTTACGAGGAAGGCACTGCAAGCAAACTGCCGATTCTCCCTCCCTCTCAGTACTTTGTGCAAGGATGGAAACACTACAACGGTTGCTTTGATTGTAACATCTGCTTTGACTTTGCCCATGAGCCAGTGGTAACTCTCTGCGGCCACTTATACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCTCTAGCCATTGACGAGCACCCACAGTGCCCGGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGTCGTGGCCGAACGGCCGAGCAAGTCGAGCCTGAAGCTAAAGCAATGCATCGTGACATTGATATACCTCCTAGACCTTCAGCTTGTGGTAACCAGATGCTTGCTACTCCCAGCACACACCAGCAGCAACTTCCATATCGAAATCCTTACCAGCGACCGAACCACGACCCCGTTCTTTTTGGGAATCATGAAGAAGATTCAGCAGCCTCTTTGCTAAACCTTGGGAGAACATCATTCAGTGGTTTTGACCATCGGGTGGCAGGAATGATTGGCAATTTCGTGTATGCGAGGGTCTTTGGGAACTCAGACAACTTAAACTCTTACTTGGGAACAGGGAGCAGAAGGGATGGGTTGAGAAGACAGGAAATGCAGGTAGCCAAGTCATTGAACAGAATCTCCATTTTCCTCTTCTGCTGTGTAATTCTATGCGTTCTTGTCTTC

Coding sequence (CDS)

TTATCAACTCTCTCTCCCTTCTCGGTTTTCTTTTCCATCTCCAACTTTTTCAGTTTTGCATTAACTTTGCCTCTTTACGAGGAAGGCACTGCAAGCAAACTGCCGATTCTCCCTCCCTCTCAGTACTTTGTGCAAGGATGGAAACACTACAACGGTTGCTTTGATTGTAACATCTGCTTTGACTTTGCCCATGAGCCAGTGGTAACTCTCTGCGGCCACTTATACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCTCTAGCCATTGACGAGCACCCACAGTGCCCGGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGTCGTGGCCGAACGGCCGAGCAAGTCGAGCCTGAAGCTAAAGCAATGCATCGTGACATTGATATACCTCCTAGACCTTCAGCTTGTGGTAACCAGATGCTTGCTACTCCCAGCACACACCAGCAGCAACTTCCATATCGAAATCCTTACCAGCGACCGAACCACGACCCCGTTCTTTTTGGGAATCATGAAGAAGATTCAGCAGCCTCTTTGCTAAACCTTGGGAGAACATCATTCAGTGGTTTTGACCATCGGGTGGCAGGAATGATTGGCAATTTCGTGTATGCGAGGGTCTTTGGGAACTCAGACAACTTAAACTCTTACTTGGGAACAGGGAGCAGAAGGGATGGGTTGAGAAGACAGGAAATGCAGGTAGCCAAGTCATTGAACAGAATCTCCATTTTCCTCTTCTGCTGTGTAATTCTATGCGTTCTTGTCTTC

Protein sequence

LSTLSPFSVFFSISNFFSFALTLPLYEEGTASKLPILPPSQYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF

Homology

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BLAST of Carg15291-RA vs. NCBI nr
Match: XP_022925786.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022925787.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata])

HSP 1 Score: 473.8 bits (1218), Expect = 3.8e-130
Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 41  QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 100
           QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP
Sbjct: 5   QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 64

Query: 101 VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 160
           VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP
Sbjct: 65  VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 124

Query: 161 YRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 220
           YRNPYQRPNHDPVLFGN+EEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL
Sbjct: 125 YRNPYQRPNHDPVLFGNYEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 184

Query: 221 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF
Sbjct: 185 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 226

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BLAST of Carg15291-RA vs. NCBI nr
Match: XP_023543343.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo] >XP_023543345.1 E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.2 bits (1214), Expect = 1.1e-129
Identity = 220/222 (99.10%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 41  QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 100
           QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHL+CWPCIYKWLHVQSASLAIDEHPQCP
Sbjct: 5   QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLFCWPCIYKWLHVQSASLAIDEHPQCP 64

Query: 101 VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 160
           VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP
Sbjct: 65  VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 124

Query: 161 YRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 220
           YRNPYQRPNHDPVLFGN+EEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL
Sbjct: 125 YRNPYQRPNHDPVLFGNYEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 184

Query: 221 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF
Sbjct: 185 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 226

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BLAST of Carg15291-RA vs. NCBI nr
Match: XP_022979030.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022979031.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-128
Identity = 219/222 (98.65%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 41  QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 100
           QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP
Sbjct: 5   QYFVQGWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCP 64

Query: 101 VCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 160
           VCKADISHTTMVPLYG GRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP
Sbjct: 65  VCKADISHTTMVPLYGCGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLP 124

Query: 161 YRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 220
           YRNPYQRPNHDPVLFGN+EEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL
Sbjct: 125 YRNPYQRPNHDPVLFGNYEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDNL 184

Query: 221 NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           NSYLGTGSRRDGLRR EMQVAKSLNRISIFLFCCVILCVLVF
Sbjct: 185 NSYLGTGSRRDGLRRHEMQVAKSLNRISIFLFCCVILCVLVF 226

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BLAST of Carg15291-RA vs. NCBI nr
Match: XP_004134706.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 7.5e-110
Identity = 195/234 (83.33%), Postives = 205/234 (87.61%), Query Frame = 0


Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 24  QYFAQGWKHVSGTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 83

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+TAE+VEPE KAMH DI+IPPRPSACGNQ+LATP
Sbjct: 84  IDEHPQCPVCKADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATP 143

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EEDSA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 144 STHQQQLPYRNPYQRPNHDPLLFANYEEDSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 203

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 204 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 257

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BLAST of Carg15291-RA vs. NCBI nr
Match: XP_004134707.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X2 [Cucumis sativus] >KGN49224.1 Rnf5 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 7.5e-110
Identity = 195/234 (83.33%), Postives = 205/234 (87.61%), Query Frame = 0


Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 5   QYFAQGWKHVSGTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 64

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+TAE+VEPE KAMH DI+IPPRPSACGNQ+LATP
Sbjct: 65  IDEHPQCPVCKADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATP 124

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EEDSA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 125 STHQQQLPYRNPYQRPNHDPLLFANYEEDSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 184

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 185 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

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BLAST of Carg15291-RA vs. TAIR10
Match: AT4G27470.1 (RING membrane-anchor 3)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-42
Identity = 95/225 (42.22%), Postives = 127/225 (56.44%), Query Frame = 0


Query: 46  GWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHP-QCPVCKA 105
           G  + +GCFDCNIC D AH+PVVTLCGHL+CWPCIYKWLHVQ +S+++D+H   CPVCK+
Sbjct: 34  GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKS 93

Query: 106 DISHTTMVPLYGRGRTAEQVEPEAK---AMHRDIDIPPRPSACGNQMLATPSTHQQQLPY 165
           +I+ T++VPLYGRG ++      +K   A+  DI   P PSA  N + +  S        
Sbjct: 94  NITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSL------- 153

Query: 166 RNPYQRPNHDPVLFGNHEED----SAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNS 225
            NP  +       F NH+      +     +L       F + V GM G+ VY R+FG  
Sbjct: 154 -NPSLQHQTLSXSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTF 213

Query: 226 DNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
            N  +      R        MQ  KSLNR+SIF  CC+ILC+L+F
Sbjct: 214 TNTIAQPYQSQRM-------MQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Carg15291-RA vs. TAIR10
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-30
Identity = 89/243 (36.63%), Postives = 120/243 (49.38%), Query Frame = 0


Query: 15  NFFSFALTLPLYEEGT---ASKLPILPPSQYFVQGWKHYNGCFDCNICFDFAHEPVVTLC 74
           +F   AL   LY EG     SK P   P    V      +  FDCNIC D   EPVVTLC
Sbjct: 6   SFEDAALLGELYGEGAFCFKSKKP--EPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLC 65

Query: 75  GHLYCWPCIYKWLHVQSASLA--IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAK 134
           GHL+CWPCI+KWL VQS S +     H QCPVCK+ +SH+T+VPLYGRGR   Q E +  
Sbjct: 66  GHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS 125

Query: 135 AMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNL 194
              R +    R     +   +T     Q++ + +P +   + PV          + +++ 
Sbjct: 126 VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQE--GYYPV----------SGVMSS 185

Query: 195 GRTSFSGFDHRVAGMIGNFVYARVFGN--SDNL---NSYLGTGSRRDGLRRQEMQVAKSL 248
              S+S     V  M+G  V  R+FG    D     ++Y   G+    +RR+ MQ  KSL
Sbjct: 186 NSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSL 234

[Close]

BLAST of Carg15291-RA vs. TAIR10
Match: AT4G28270.1 (RING membrane-anchor 2)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 74/219 (33.79%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 52  GCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS-LAIDEH------PQCPVCKA 111
           G FDCNIC D   +PVVTLCGHL+CWPCI+KW +  + S   +D++      P+CPVCK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 112 DISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNP 171
           D+S  T+VP+YGRG+         KA     ++P RP+     +        +    R  
Sbjct: 77  DVSEATLVPIYGRGQ---------KAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQRYM 136

Query: 172 YQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFG-NSDNLNSY 231
           Y+ P  DPV+                            G++   VY R+FG +S N+  Y
Sbjct: 137 YRMP--DPVM----------------------------GVVCEMVYRRLFGESSSNMAPY 193

Query: 232 LGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
                R    RR+ MQ  +SL+R+ +FL C + +C+ +F
Sbjct: 197 RDMNVRS---RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Carg15291-RA vs. TAIR10
Match: AT1G19310.1 (RING/U-box superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 54  FDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVP 113
           F+CNIC D A +P+VTLCGHL+CWPC+YKWLH+ S S        CPVCKA I    +VP
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS------KDCPVCKAVIEEDRLVP 80

Query: 114 LYGRGRTAEQVEPEAKAMHRDIDIPPRPS 143
           LYGRG+++   +P +K++   +++P RPS
Sbjct: 81  LYGRGKSS--ADPRSKSI-PGLEVPNRPS 100

[Close]

BLAST of Carg15291-RA vs. TAIR10
Match: AT1G74990.1 (RING/U-box superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 54  FDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVP 113
           F CNIC + A EP+VTLCGHL+CWPC+YKWLH  S S        CPVCKA +   T+VP
Sbjct: 17  FGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS------NHCPVCKALVKEDTLVP 76

Query: 114 LYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPV 173
           LYG G+ +   +P +K ++  + +P RP+A   +  A P   Q+           +H   
Sbjct: 77  LYGMGKPSS--DPRSK-LNSGVTVPNRPAATRTE-TARPRLEQR-----------HHGSS 125

Query: 174 LFGNHEEDSA 184
            FG H   +A
Sbjct: 137 FFGGHSSFAA 125

[Close]

BLAST of Carg15291-RA vs. Swiss-Prot
Match: sp|Q6R567|RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.9e-41
Identity = 98/228 (42.98%), Postives = 134/228 (58.77%), Query Frame = 0


Query: 48  KHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASL--AIDEHPQCPVCKAD 107
           ++ +G FDCNIC D  HEPV+TLCGHLYCWPCIYKW++ QS S   +  + PQCPVCKA+
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 108 ISHTTMVPLYGRGRTAEQVEP-EAKAMHRDIDIPPRPSA--CGNQ-MLATPSTHQQQLPY 167
           +S  T++PLYGRG   +  +P E KA +  I IP RP +  CG   +L T  ++  QL  
Sbjct: 93  VSEKTLIPLYGRG--GQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQ 152

Query: 168 RNPYQRPN--HDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNSDN 227
           R  YQ+ +    P   G++    ++ +L+ G  + +   H    MIG   YAR+FGNS  
Sbjct: 153 RRGYQQQSQTRQPAYQGSY---MSSPMLSPGGATANMLQH---SMIGEVAYARIFGNSST 212

Query: 228 L-----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
                 NSY    S    +RRQ  Q  +SL RI  FLFCC + C+++F
Sbjct: 213 TMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]

BLAST of Carg15291-RA vs. Swiss-Prot
Match: sp|Q8GUK7|RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.0e-41
Identity = 95/225 (42.22%), Postives = 127/225 (56.44%), Query Frame = 0


Query: 46  GWKHYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHP-QCPVCKA 105
           G  + +GCFDCNIC D AH+PVVTLCGHL+CWPCIYKWLHVQ +S+++D+H   CPVCK+
Sbjct: 34  GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKS 93

Query: 106 DISHTTMVPLYGRGRTAEQVEPEAK---AMHRDIDIPPRPSACGNQMLATPSTHQQQLPY 165
           +I+ T++VPLYGRG ++      +K   A+  DI   P PSA  N + +  S        
Sbjct: 94  NITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSL------- 153

Query: 166 RNPYQRPNHDPVLFGNHEED----SAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFGNS 225
            NP  +       F NH+      +     +L       F + V GM G+ VY R+FG  
Sbjct: 154 -NPSLQHQTLSXSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTF 213

Query: 226 DNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
            N  +      R        MQ  KSLNR+SIF  CC+ILC+L+F
Sbjct: 214 TNTIAQPYQSQRM-------MQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Carg15291-RA vs. Swiss-Prot
Match: sp|O64425|RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-29
Identity = 89/243 (36.63%), Postives = 120/243 (49.38%), Query Frame = 0


Query: 15  NFFSFALTLPLYEEGT---ASKLPILPPSQYFVQGWKHYNGCFDCNICFDFAHEPVVTLC 74
           +F   AL   LY EG     SK P   P    V      +  FDCNIC D   EPVVTLC
Sbjct: 6   SFEDAALLGELYGEGAFCFKSKKP--EPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLC 65

Query: 75  GHLYCWPCIYKWLHVQSASLA--IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAK 134
           GHL+CWPCI+KWL VQS S +     H QCPVCK+ +SH+T+VPLYGRGR   Q E +  
Sbjct: 66  GHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS 125

Query: 135 AMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNL 194
              R +    R     +   +T     Q++ + +P +   + PV          + +++ 
Sbjct: 126 VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQE--GYYPV----------SGVMSS 185

Query: 195 GRTSFSGFDHRVAGMIGNFVYARVFGN--SDNL---NSYLGTGSRRDGLRRQEMQVAKSL 248
              S+S     V  M+G  V  R+FG    D     ++Y   G+    +RR+ MQ  KSL
Sbjct: 186 NSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSL 234

[Close]

BLAST of Carg15291-RA vs. Swiss-Prot
Match: sp|P93030|RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 74/219 (33.79%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 52  GCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS-LAIDEH------PQCPVCKA 111
           G FDCNIC D   +PVVTLCGHL+CWPCI+KW +  + S   +D++      P+CPVCK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 112 DISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATPSTHQQQLPYRNP 171
           D+S  T+VP+YGRG+         KA     ++P RP+     +        +    R  
Sbjct: 77  DVSEATLVPIYGRGQ---------KAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQRYM 136

Query: 172 YQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYARVFG-NSDNLNSY 231
           Y+ P  DPV+                            G++   VY R+FG +S N+  Y
Sbjct: 137 YRMP--DPVM----------------------------GVVCEMVYRRLFGESSSNMAPY 193

Query: 232 LGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
                R    RR+ MQ  +SL+R+ +FL C + +C+ +F
Sbjct: 197 RDMNVRS---RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Carg15291-RA vs. Swiss-Prot
Match: sp|Q99942|RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 54  FDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCKADISHTTMVP 113
           F+CNIC + A E VV++CGHLYCWPC+++WL  +       E  +CPVCKA IS   +VP
Sbjct: 25  FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PERQECPVCKAGISREKVVP 84

Query: 114 LYGRGRTAEQVEPEAKAMHRDIDIPPRP 142
           LYGRG    Q +P  K        PPRP
Sbjct: 85  LYGRGSQKPQ-DPRLKT-------PPRP 98

[Close]

BLAST of Carg15291-RA vs. TrEMBL
Match: tr|A0A0A0KK60|A0A0A0KK60_CUCSA (Rnf5 OS=Cucumis sativus OX=3659 GN=Csa_6G517320 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 5.0e-110
Identity = 195/234 (83.33%), Postives = 205/234 (87.61%), Query Frame = 0


Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 5   QYFAQGWKHVSGTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 64

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+TAE+VEPE KAMH DI+IPPRPSACGNQ+LATP
Sbjct: 65  IDEHPQCPVCKADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATP 124

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EEDSA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 125 STHQQQLPYRNPYQRPNHDPLLFANYEEDSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 184

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 185 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of Carg15291-RA vs. TrEMBL
Match: tr|A0A1S3AZB8|A0A1S3AZB8_CUCME (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103484523 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.2e-108
Identity = 194/234 (82.91%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 41  QYFVQGWKH--------YNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 100
           QYF QGWKH        Y GCFDCNIC DFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA
Sbjct: 5   QYFAQGWKHVSGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA 64

Query: 101 IDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLATP 160
           IDEHPQCPVCKADISHTTMVPLYGRG+ AE+VE EAKAMHRDI+IPPRPSACGNQ+LATP
Sbjct: 65  IDEHPQCPVCKADISHTTMVPLYGRGQMAEEVELEAKAMHRDINIPPRPSACGNQILATP 124

Query: 161 STHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYAR 220
           STHQQQLPYRNPYQRPNHDP+LF N+EE SA+ LLNL RTSFS F H V GMIG+FV+AR
Sbjct: 125 STHQQQLPYRNPYQRPNHDPLLFANYEEHSASPLLNLARTSFSSFHHPVVGMIGDFVHAR 184

Query: 221 VFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           VFGNSDNL    NSY  TGS R+ LRRQEMQV KSLNRISIFLFCCVILCVLVF
Sbjct: 185 VFGNSDNLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of Carg15291-RA vs. TrEMBL
Match: tr|A0A1B1LZW2|A0A1B1LZW2_BETPL (ZFP9 OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.2e-81
Identity = 155/235 (65.96%), Postives = 174/235 (74.04%), Query Frame = 0


Query: 42  YFVQGWK----------HYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASL 101
           YF + WK          + NGCFDCNIC DFA+EPVVTLCGHLYCWPCIYKWLHVQSASL
Sbjct: 6   YFAREWKSIQGVATESENSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASL 65

Query: 102 AIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLAT 161
           A DEHPQCPVCKADISHTTMVPLYGRG+T  + E E KA HRD+ IPPRP+ACG Q L +
Sbjct: 66  ASDEHPQCPVCKADISHTTMVPLYGRGQTLNEDEVEGKASHRDMAIPPRPAACGTQTLIS 125

Query: 162 PSTHQQQLPYRNPYQRPNHDPVLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIGNFVYA 221
            S   QQLPYRNPYQ  +++P  +G+HEEDS +  LNLG  +  GF H V GM G  VYA
Sbjct: 126 TSHTGQQLPYRNPYQNQHYNPHPYGSHEEDSTSPWLNLG-GAMPGFHHPVVGMFGEMVYA 185

Query: 222 RVFGNSDNL----NSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
           RVFGNS +L    NSY   GS    LRRQEMQ  KSLNRISIFLFCC +LC++VF
Sbjct: 186 RVFGNSASLYSYPNSYHLMGSSNPRLRRQEMQADKSLNRISIFLFCCFLLCLMVF 239

[Close]

BLAST of Carg15291-RA vs. TrEMBL
Match: tr|A0A067GKT9|A0A067GKT9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026346mg PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.4e-80
Identity = 151/236 (63.98%), Postives = 172/236 (72.88%), Query Frame = 0


Query: 41  QYFVQGWK----------HYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS 100
           QYF + WK          +YNGCFDCNIC DFA++PVVTLCGHLYCWPCIYKWLHVQSAS
Sbjct: 5   QYFAREWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSAS 64

Query: 101 LAIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLA 160
           LA DEHPQCPVCKADISHTTMVPLYGRG+T  + EPE K  HR   IPPRP A GNQ L 
Sbjct: 65  LASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPAFGNQALL 124

Query: 161 TPSTHQ-QQLPYRNPYQRPNHDP---VLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIG 220
            P+++  QQLPYRNPYQ  N+DP     +G  E +S + LLNLG T+ SGF H V GM G
Sbjct: 125 YPTSNTGQQLPYRNPYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMFG 184

Query: 221 NFVYARVFGNSDNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
             VYA VFGNS++L +Y  +      LRR EMQ  KSLNRISIFLFCC +LC++VF
Sbjct: 185 EMVYASVFGNSESLYTYPNSYHSNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240

[Close]

BLAST of Carg15291-RA vs. TrEMBL
Match: tr|V4UJS8|V4UJS8_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016469mg PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.4e-80
Identity = 151/236 (63.98%), Postives = 171/236 (72.46%), Query Frame = 0


Query: 41  QYFVQGWK----------HYNGCFDCNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSAS 100
           QYF + WK          +YNGCFDCNIC DFA+EPVVTLCGHLYCWPCIYKWLHVQSAS
Sbjct: 5   QYFAREWKSIASAATGSENYNGCFDCNICLDFAYEPVVTLCGHLYCWPCIYKWLHVQSAS 64

Query: 101 LAIDEHPQCPVCKADISHTTMVPLYGRGRTAEQVEPEAKAMHRDIDIPPRPSACGNQMLA 160
           LA DEHPQCPVCKADISHTTMVPLYGRG+T  + EPE K  HR   IPPRP A GNQ L 
Sbjct: 65  LASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPAFGNQALL 124

Query: 161 TPSTHQ-QQLPYRNPYQRPNHDP---VLFGNHEEDSAASLLNLGRTSFSGFDHRVAGMIG 220
            P+++  QQ PYRNPYQ  N+DP     +G  E +S + LLNLG T+ SGF H V GM G
Sbjct: 125 YPTSNTGQQRPYRNPYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMFG 184

Query: 221 NFVYARVFGNSDNLNSYLGTGSRRDGLRRQEMQVAKSLNRISIFLFCCVILCVLVF 263
             VYA VFGNS++L +Y  +      LRR EMQ  KSLNRISIFLFCC +LC++VF
Sbjct: 185 EMVYASVFGNSESLYTYPNSYHSNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240

The following BLAST results are available for this feature:

BLAST of Carg15291-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925786.1	3.8e-130	99.55	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022925787.1 E3 ...	[more]
XP_023543343.1	1.1e-129	99.10	E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo] >XP_023543345...	[more]
XP_022979030.1	1.2e-128	98.65	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022979031.1 E3 ub...	[more]
XP_004134706.1	7.5e-110	83.33	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucumis sativus]	[more]
XP_004134707.1	7.5e-110	83.33	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X2 [Cucumis sativus] ...	[more]

BLAST of Carg15291-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27470.1	2.8e-42	42.22	RING membrane-anchor 3	[more]
AT4G03510.1	2.5e-30	36.63	RING membrane-anchor 1	[more]
AT4G28270.1	1.9e-27	33.79	RING membrane-anchor 2	[more]
AT1G19310.1	2.2e-23	51.69	RING/U-box superfamily protein	[more]
AT1G74990.1	1.1e-22	40.77	RING/U-box superfamily protein	[more]

BLAST of Carg15291-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6R567\|RMA1_CAPAN	3.9e-41	42.98	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
sp\|Q8GUK7\|RMA3_ARATH	5.0e-41	42.22	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
sp\|O64425\|RMA1_ARATH	4.4e-29	36.63	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
sp\|P93030\|RMA2_ARATH	3.5e-26	33.79	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
sp\|Q99942\|RNF5_HUMAN	1.3e-17	48.86	E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1	[more]

BLAST of Carg15291-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KK60\|A0A0A0KK60_CUCSA	5.0e-110	83.33	Rnf5 OS=Cucumis sativus OX=3659 GN=Csa_6G517320 PE=4 SV=1	[more]
tr\|A0A1S3AZB8\|A0A1S3AZB8_CUCME	1.2e-108	82.91	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103484523 ...	[more]
tr\|A0A1B1LZW2\|A0A1B1LZW2_BETPL	2.2e-81	65.96	ZFP9 OS=Betula platyphylla OX=78630 PE=2 SV=1	[more]
tr\|A0A067GKT9\|A0A067GKT9_CITSI	2.4e-80	63.98	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026346mg PE=4 SV=1	[more]
tr\|V4UJS8\|V4UJS8_9ROSI	5.4e-80	63.98	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016469mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR018957	Znf_C3HC4_RING-type
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg15291	Carg15291	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15291-RA.CDS.2	Carg15291-RA.CDS.2	CDS
Carg15291-RA.CDS.1	Carg15291-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15291-RA.exon.2	Carg15291-RA.exon.2	exon
Carg15291-RA.exon.1	Carg15291-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg15291-RA	Carg15291-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 56..102 e-value: 2.7E-8 score: 43.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 56..103 score: 12.416
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 43..137 e-value: 5.9E-17 score: 63.3
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 56..102 e-value: 3.7E-8 score: 33.0
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 49..262
None	No IPR available	PANTHER	PTHR12313:SF6	SUBFAMILY NOT NAMED	coord: 49..262
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 54..104 e-value: 6.08892E-25 score: 93.5227
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 50..116
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 71..80