Carg19287-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19287-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 15-like isoform X1
Location	Cucurbita_argyrosperma_scaffold_137 : 164069 .. 165813 (-)
Sequence length	300

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAAGTAATATTCATTTATTCATCTTGATTTCTTCATTCCGTGGGCTTTCTGTTTAGCGTTGTTTGATGAAATTTTTCGTCTGTTGGGTTTTGTTTGCTATTGATTGCCTTTTGGGGATTTATTAGGGCTGGGTGTTTCTGATCTTAACTCCCGAGCAATGGGGTTTTTCCCCTTATTTCTTTATACATTGTAGCTATGGGAACGGACGAACATTTGGCTGGAACCACTGAAGTCATTAGAATACCTCGCCGATTCTTCTATGGCAAAGTCCTTCTTTCCTCCTAGTTTCTTTCAATTGGCTCCATTCCCAATTGAATGGTAGACAAAGACATTGTTGGGGACGTTTCCAGAGACGTTTCTCTTAAAATTCTTCTAGTTCTATAAACTGTAATTGAACTGATCATTCTTTTTTTTTCTTTTCTTTTCAAGTGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGGTTTGAAATTCAGCCTTATATTCCTTTTGTTTCAACGTTATTTTCTTGGGAAATTTTTATCTTTAATCATTCAATACTTGAGCTGTTGAAGTTTTCTTTGATTGAGCAAATATACTAGTAAACCACTAATCTTGTGAGATCCCACGTTCTTCATAAGAGCGTGGAAATCTCTCCCTAATAGACACGTTTTAAAACCTTGAAGGGAAGTCTAGAAGGAAAAACCCAAAAAGAACAATATTGCTAGCGTGGGCTTGAGCTGTTACAAATCTCGAGTAGTTGTCTATGAGCCAGGTGTCTGAAGTGGAGGTTTCTTCCATAACTAATAGTTTGCGTTTAAGCCCCCTTCTGCCTAGTGTCCAAATCTTTTAACCTTTTAATGTATACTTTTTGAAGTCCTCTTTCCATTGCATTCCATTTAGGCTTTGATTCTATCGTATAGCTTGGTCTCCTCTGTTGTGCCTTTCTAGCCTCCTCCTAGGCCAGACAAGTTTCAAATTAGCTACTATAATTTCTTGGAAAATTATTCTATGTGTCTGCCTCATAATAAGCGTTAAACGTGGATTCAAAACGAACCAAATTTGAGGTACTTCTCTCATAAATCCAATGTAAAAAACTGTCAGTTACATTGAATAATTTCTCTTCACTGTGACTCCGACATACACACACATATATATATACACGCACTGTGGACTTTTATTTGATTCCAGACTTGTAGCCTTCAATTATTCACCTGTGTTTACCACAAGATTATAAGGAGTATAATATAGCAGGTCTGGCTTTTGGCTGGCAGTTTATTTCTGATGGTTATACTAATATCCAGGATTGTAAGGGATTAAGGAACAGGCTTTAGGTAGCAATTAGTCATAGAGAAAATATTTGTTTGAACTAAACATAAATGCCATTTTCACGATGGTAATGATATACTTTCTGGATCTGAGAGATTCTTTTACATATTAGAAAGTTCAATAATTTAATATTGCCATTTTTTTACTTCATATTGTGTTATGATATGCTTGCAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

mRNA sequence

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAATGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

Coding sequence (CDS)

ATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACTGCCTCCGCCTTCGTTCGATCCCAGTCGAATGATTGGTATCATTAAACGAAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTACAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAAACAATGAAACCTAGCAAACGTCAAAGGAAATCCCGCTAG

Protein sequence

MADESQQPQSESQPPPLEVDSAPPPLPPPSFDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR

Homology

[Close]

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_004134646.1 (PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hypothetical protein Csa_6G524060 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEVXXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECLVY 60
           MADESQQPQSE+Q PPL++  XXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECLVY
Sbjct: 1   MADESQQPQSETQ-PPLDIDSXXXXXXXXRFDPSRMIGIIRRKALIKELAAAYHAECLVY 60

Query: 61  CQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           CQELLELQRKWDEPYIELKAPDDPRKET KPSKRQ+KSR
Sbjct: 61  CQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKSR 98

[Close]

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_008439608.1 (PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEV--XXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECL 60
           MADESQQPQSESQ PPLEV  XXXXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECL
Sbjct: 1   MADESQQPQSESQ-PPLEVXXXXXXXXXXXXXFDPSRMIGIIRRKALIKELAAAYHAECL 60

Query: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQ+KSR
Sbjct: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQKKSR 100

[Close]

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_022926864.1 (uncharacterized protein LOC111433847 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 44  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 103

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 104 PSKRQKKAR 112

[Close]

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_023003492.1 (uncharacterized protein LOC111497089 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 44  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 103

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 104 PSKRQKKAR 112

[Close]

BLAST of Carg19287-RA vs. NCBI nr
Match: XP_023517756.1 (uncharacterized protein LOC111781421 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKAL+KELAAAYHAECL+YCQELLELQRKWDEPYIELK P+DPRKETMK
Sbjct: 28  FDPSRMIGIIKRKALVKELAAAYHAECLLYCQELLELQRKWDEPYIELKVPEDPRKETMK 87

Query: 91  PSKRQRKSR 100
           PSKRQ+K+R
Sbjct: 88  PSKRQKKAR 96

[Close]

BLAST of Carg19287-RA vs. TAIR10
Match: AT4G18400.1 (unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIK+LAAAYH ECL  C+ELLELQ++ DEP+++ KA +D RKET++
Sbjct: 38  FDPSRMIGIIKRKALIKDLAAAYHVECLALCRELLELQKRKDEPFLDTKATEDLRKETLR 97

Query: 91  PSKRQRKSR 100
            S ++ K +
Sbjct: 98  SSSKRAKKK 106

[Close]

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A1S3AZS8|A0A1S3AZS8_CUCME (uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-35
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEV--XXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECL 60
           MADESQQPQSESQ PPLEV  XXXXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECL
Sbjct: 1   MADESQQPQSESQ-PPLEVXXXXXXXXXXXXXFDPSRMIGIIRRKALIKELAAAYHAECL 60

Query: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQ+KSR
Sbjct: 61  VYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQKKSR 100

[Close]

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A0A0KM14|A0A0A0KM14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-35
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MADESQQPQSESQPPPLEVXXXXXXXXXXSFDPSRMIGIIKRKALIKELAAAYHAECLVY 60
           MADESQQPQSE+Q PPL++  XXXXXXXX FDPSRMIGII+RKALIKELAAAYHAECLVY
Sbjct: 1   MADESQQPQSETQ-PPLDIDSXXXXXXXXRFDPSRMIGIIRRKALIKELAAAYHAECLVY 60

Query: 61  CQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR 100
           CQELLELQRKWDEPYIELKAPDDPRKET KPSKRQ+KSR
Sbjct: 61  CQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKSR 98

[Close]

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|W9QXC0|W9QXC0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005901 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-23
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RKETM+
Sbjct: 29  FDPSRMIGIIKRKALIKELAAVYHAECLKYCQELLELQRKWDEPFIDLKTPEDARKETMR 88

Query: 91  PSKRQRKSR 100
           P KR +K R
Sbjct: 89  PPKRLKKLR 97

[Close]

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A2P5DHD1|A0A2P5DHD1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064530 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.6e-23
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RK++M+
Sbjct: 38  FDPSRMIGIIKRKALIKELAAVYHAECLAYCQELLELQRKWDEPFIDLKIPEDSRKDSMR 97

Query: 91  PSKRQRKSR 100
           P KR +K+R
Sbjct: 98  PPKRLKKAR 106

[Close]

BLAST of Carg19287-RA vs. TrEMBL
Match: tr|A0A2P5EA25|A0A2P5EA25_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_218590 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 31  FDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMK 90
           FDPSRMIGIIKRKALIKELAA YHAECL YCQELLELQRKWDEP+I+LK P+D RK+ M+
Sbjct: 38  FDPSRMIGIIKRKALIKELAAVYHAECLAYCQELLELQRKWDEPFIDLKIPEDSRKDAMR 97

Query: 91  PSKRQRKSR 100
           P KR +K+R
Sbjct: 98  PPKRLKKAR 106

The following BLAST results are available for this feature:

BLAST of Carg19287-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134646.1	1.5e-34	89.90	PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hy...	[more]
XP_008439608.1	1.5e-34	94.06	PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo]	[more]
XP_022926864.1	1.8e-27	91.30	uncharacterized protein LOC111433847 [Cucurbita moschata]	[more]
XP_023003492.1	1.8e-27	91.30	uncharacterized protein LOC111497089 [Cucurbita maxima]	[more]
XP_023517756.1	1.8e-27	91.30	uncharacterized protein LOC111781421 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19287-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18400.1	1.3e-19	65.22	unknown protein	[more]

BLAST of Carg19287-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19287-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZS8\|A0A1S3AZS8_CUCME	9.8e-35	94.06	uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=...	[more]
tr\|A0A0A0KM14\|A0A0A0KM14_CUCSA	9.8e-35	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1	[more]
tr\|W9QXC0\|W9QXC0_9ROSA	3.9e-23	82.61	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005901 PE=4 SV=1	[more]
tr\|A0A2P5DHD1\|A0A2P5DHD1_PARAD	8.6e-23	79.71	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064530 PE...	[more]
tr\|A0A2P5EA25\|A0A2P5EA25_9ROSA	1.1e-22	79.71	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_218590 PE=4 S...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19287	Carg19287	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19287-RA	Carg19287-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19287-RA.CDS.3	Carg19287-RA.CDS.3	CDS
Carg19287-RA.CDS.2	Carg19287-RA.CDS.2	CDS
Carg19287-RA.CDS.1	Carg19287-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19287-RA.exon.3	Carg19287-RA.exon.3	exon
Carg19287-RA.exon.2	Carg19287-RA.exon.2	exon
Carg19287-RA.exon.1	Carg19287-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..99
None	No IPR available	PANTHER	PTHR37242	FAMILY NOT NAMED	coord: 9..98