Carg22883 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22883
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_124 : 29690 .. 29950 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTAAAGGAAGGTGCGTAAAGACAAGAGTTCCATTAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGAATCAGAATCTGAGCTCTCTCCTGATAGGTCTGGTGGGCGCAGCCCTGACTTTGTCAGCTTATTCACAGACATGGGTTTCTCCAACTGAGTGCATCACAGCCGGCCTTCTCGTTCTCGTTTTTGGACTTCTTGTCAATGAAGGTTTCATCTCCATTTAG

mRNA sequence

ATGTTGGCTAAAGGAAGGTGCGTAAAGACAAGAGTTCCATTAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGAATCAGAATCTGAGCTCTCTCCTGATAGGTCTGGTGGGCGCAGCCCTGACTTTGTCAGCTTATTCACAGACATGGGTTTCTCCAACTGAGTGCATCACAGCCGGCCTTCTCGTTCTCGTTTTTGGACTTCTTGTCAATGAAGGTTTCATCTCCATTTAG

Coding sequence (CDS)

ATGTTGGCTAAAGGAAGGTGCGTAAAGACAAGAGTTCCATTAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGAATCAGAATCTGAGCTCTCTCCTGATAGGTCTGGTGGGCGCAGCCCTGACTTTGTCAGCTTATTCACAGACATGGGTTTCTCCAACTGAGTGCATCACAGCCGGCCTTCTCGTTCTCGTTTTTGGACTTCTTGTCAATGAAGGTTTCATCTCCATTTAG

Protein sequence

MLAKGRCVKTRVPLNKKKKKKKKKKKKKRKRKKMNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI

Homology

[Close]

BLAST of Carg22883 vs. NCBI nr
Match: XP_023531694.1 (uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MLAKGRCVKTRVPLNXXXXXXXXXXXXXXXXXXXXXXXSSLLIGLVGAALTLSAYSQTWV 60
          MLAKGRCVKTRV LN   XXXXXXXXXXXXXXXXXXXXSSLLIGLVGAALTLSAYSQTWV
Sbjct: 1  MLAKGRCVKTRVSLN---XXXXXXXXXXXXXXXXXXXXSSLLIGLVGAALTLSAYSQTWV 60

Query: 61 SPTECITAGLLVLVFGLLVNEGFISI 87
          SPTECITAGLLVLVFGLLVNEGFISI
Sbjct: 61 SPTECITAGLLVLVFGLLVNEGFISI 83

[Close]

BLAST of Carg22883 vs. NCBI nr
Match: XP_022933884.1 (uncharacterized protein LOC111441164 [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI
Sbjct: 6  SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 53

[Close]

BLAST of Carg22883 vs. NCBI nr
Match: XP_022159078.1 (uncharacterized protein LOC111025520 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQTW+SPTECIT GLLVL+FGLLVNEG IS+
Sbjct: 45 SSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

[Close]

BLAST of Carg22883 vs. NCBI nr
Match: XP_011652232.1 (PREDICTED: uncharacterized protein LOC105435000 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 6  SSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 53

[Close]

BLAST of Carg22883 vs. NCBI nr
Match: XP_016899638.1 (PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 38 SSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

[Close]

BLAST of Carg22883 vs. TAIR10
Match: AT3G29034.1 (unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 40 SLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SL+IGLVG ALTL AYSQT+V P + I AGL VL FGLLV+EGFIS+
Sbjct: 40 SLVIGLVGGALTLGAYSQTYVDPGKSIGAGLFVLFFGLLVSEGFISL 86

[Close]

BLAST of Carg22883 vs. TrEMBL
Match: tr|A0A1S4DUJ5|A0A1S4DUJ5_CUCME (uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 38 SSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

[Close]

BLAST of Carg22883 vs. TrEMBL
Match: tr|A0A061EF06|A0A061EF06_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT++SPT+C+T GLLVL+FGLLV EG IS+
Sbjct: 6  SSLLIGLVGAAITLSAYSQTFISPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Carg22883 vs. TrEMBL
Match: tr|A0A1U8MW02|A0A1U8MW02_GOSHI (uncharacterized protein LOC107940765 OS=Gossypium hirsutum OX=3635 GN=LOC107940765 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIG+VGAA+TLSAYSQT+VSPT+C+T GLLVL+FGLLV EG IS+
Sbjct: 6  SSLLIGIVGAAVTLSAYSQTFVSPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Carg22883 vs. TrEMBL
Match: tr|A0A0D2Q3R0|A0A0D2Q3R0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G239800 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIG+VGAA+TLSAYSQT+VSPT+C+T GLLVL+FGLLV EG IS+
Sbjct: 6  SSLLIGIVGAAVTLSAYSQTFVSPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Carg22883 vs. TrEMBL
Match: tr|A0A068U3S5|A0A068U3S5_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039591001 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIG+VGAA+TLSAYSQT +SPT+CIT GL VL+FGLLV EG ISI
Sbjct: 6  SSLLIGIVGAAITLSAYSQTLISPTQCITVGLFVLIFGLLVKEGLISI 53

The following BLAST results are available for this feature:

BLAST of Carg22883 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531694.1	6.9e-20	95.35	uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo]	[more]
XP_022933884.1	1.3e-15	100.00	uncharacterized protein LOC111441164 [Cucurbita moschata]	[more]
XP_022159078.1	9.6e-14	87.50	uncharacterized protein LOC111025520 [Momordica charantia]	[more]
XP_011652232.1	6.2e-13	87.50	PREDICTED: uncharacterized protein LOC105435000 [Cucumis sativus]	[more]
XP_016899638.1	6.2e-13	87.50	PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo]	[more]

BLAST of Carg22883 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29034.1	5.4e-11	72.34	unknown protein	[more]

BLAST of Carg22883 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22883 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUJ5\|A0A1S4DUJ5_CUCME	4.1e-13	87.50	uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=...	[more]
tr\|A0A061EF06\|A0A061EF06_THECC	2.3e-11	79.17	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1	[more]
tr\|A0A1U8MW02\|A0A1U8MW02_GOSHI	3.9e-11	79.17	uncharacterized protein LOC107940765 OS=Gossypium hirsutum OX=3635 GN=LOC1079407...	[more]
tr\|A0A0D2Q3R0\|A0A0D2Q3R0_GOSRA	3.9e-11	79.17	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G239800 PE=4 ...	[more]
tr\|A0A068U3S5\|A0A068U3S5_COFCA	6.6e-11	79.17	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039591001 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22883-RA	Carg22883-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22883	Cucsa.338710	Cucumber (Gy14) v1	carcgyB0258

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22883	Silver-seed gourd	carcarB249
Carg22883	Silver-seed gourd	carcarB250
Carg22883	Silver-seed gourd	carcarB251
Carg22883	Cucumber (Gy14) v2	carcgybB0227
Carg22883	Cucurbita maxima (Rimu)	carcmaB0291
Carg22883	Cucurbita maxima (Rimu)	carcmaB0292
Carg22883	Cucurbita moschata (Rifu)	carcmoB0297
Carg22883	Cucurbita moschata (Rifu)	carcmoB0298
Carg22883	Cucurbita pepo (Zucchini)	carcpeB0301
Carg22883	Cucurbita pepo (Zucchini)	carcpeB0302
Carg22883	Wild cucumber (PI 183967)	carcpiB0243
Carg22883	Cucumber (Chinese Long) v2	carcuB0237
Carg22883	Cucumber (Chinese Long) v3	carcucB0241
Carg22883	Melon (DHL92) v3.5.1	carmeB0219
Carg22883	Melon (DHL92) v3.6.1	carmedB0225
Carg22883	Watermelon (Charleston Gray)	carwcgB0207
Carg22883	Watermelon (97103) v1	carwmB0201
Carg22883	Watermelon (97103) v2	carwmbB0215
Carg22883	Watermelon (97103) v2	carwmbB0217
Carg22883	Wax gourd	carwgoB0265
Carg22883	Wax gourd	carwgoB0266