Carg22883-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22883-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_124 : 29690 .. 29950 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTAAAGGAAGGTGCGTAAAGACAAGAGTTCCATTAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGAATCAGAATCTGAGCTCTCTCCTGATAGGTCTGGTGGGCGCAGCCCTGACTTTGTCAGCTTATTCACAGACATGGGTTTCTCCAACTGAGTGCATCACAGCCGGCCTTCTCGTTCTCGTTTTTGGACTTCTTGTCAATGAAGGTTTCATCTCCATTTAG

mRNA sequence

ATGTTGGCTAAAGGAAGGTGCGTAAAGACAAGAGTTCCATTAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGAATCAGAATCTGAGCTCTCTCCTGATAGGTCTGGTGGGCGCAGCCCTGACTTTGTCAGCTTATTCACAGACATGGGTTTCTCCAACTGAGTGCATCACAGCCGGCCTTCTCGTTCTCGTTTTTGGACTTCTTGTCAATGAAGGTTTCATCTCCATTTAG

Coding sequence (CDS)

ATGTTGGCTAAAGGAAGGTGCGTAAAGACAAGAGTTCCATTAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGATGAATCAGAATCTGAGCTCTCTCCTGATAGGTCTGGTGGGCGCAGCCCTGACTTTGTCAGCTTATTCACAGACATGGGTTTCTCCAACTGAGTGCATCACAGCCGGCCTTCTCGTTCTCGTTTTTGGACTTCTTGTCAATGAAGGTTTCATCTCCATTTAG

Protein sequence

MLAKGRCVKTRVPLNKKKKKKKKKKKKKRKRKKMNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI

Homology

[Close]

BLAST of Carg22883-RA vs. NCBI nr
Match: XP_023531694.1 (uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MLAKGRCVKTRVPLNXXXXXXXXXXXXXXXXXXXXXXXSSLLIGLVGAALTLSAYSQTWV 60
          MLAKGRCVKTRV LN   XXXXXXXXXXXXXXXXXXXXSSLLIGLVGAALTLSAYSQTWV
Sbjct: 1  MLAKGRCVKTRVSLN---XXXXXXXXXXXXXXXXXXXXSSLLIGLVGAALTLSAYSQTWV 60

Query: 61 SPTECITAGLLVLVFGLLVNEGFISI 87
          SPTECITAGLLVLVFGLLVNEGFISI
Sbjct: 61 SPTECITAGLLVLVFGLLVNEGFISI 83

[Close]

BLAST of Carg22883-RA vs. NCBI nr
Match: XP_022933884.1 (uncharacterized protein LOC111441164 [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI
Sbjct: 6  SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 53

[Close]

BLAST of Carg22883-RA vs. NCBI nr
Match: XP_022159078.1 (uncharacterized protein LOC111025520 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQTW+SPTECIT GLLVL+FGLLVNEG IS+
Sbjct: 45 SSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

[Close]

BLAST of Carg22883-RA vs. NCBI nr
Match: XP_011652232.1 (PREDICTED: uncharacterized protein LOC105435000 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 6  SSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 53

[Close]

BLAST of Carg22883-RA vs. NCBI nr
Match: XP_016899638.1 (PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 38 SSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

[Close]

BLAST of Carg22883-RA vs. TAIR10
Match: AT3G29034.1 (unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 40 SLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SL+IGLVG ALTL AYSQT+V P + I AGL VL FGLLV+EGFIS+
Sbjct: 40 SLVIGLVGGALTLGAYSQTYVDPGKSIGAGLFVLFFGLLVSEGFISL 86

[Close]

BLAST of Carg22883-RA vs. TrEMBL
Match: tr|A0A1S4DUJ5|A0A1S4DUJ5_CUCME (uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 38 SSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

[Close]

BLAST of Carg22883-RA vs. TrEMBL
Match: tr|A0A061EF06|A0A061EF06_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIGLVGAA+TLSAYSQT++SPT+C+T GLLVL+FGLLV EG IS+
Sbjct: 6  SSLLIGLVGAAITLSAYSQTFISPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Carg22883-RA vs. TrEMBL
Match: tr|A0A1U8MW02|A0A1U8MW02_GOSHI (uncharacterized protein LOC107940765 OS=Gossypium hirsutum OX=3635 GN=LOC107940765 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIG+VGAA+TLSAYSQT+VSPT+C+T GLLVL+FGLLV EG IS+
Sbjct: 6  SSLLIGIVGAAVTLSAYSQTFVSPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Carg22883-RA vs. TrEMBL
Match: tr|A0A0D2Q3R0|A0A0D2Q3R0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G239800 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIG+VGAA+TLSAYSQT+VSPT+C+T GLLVL+FGLLV EG IS+
Sbjct: 6  SSLLIGIVGAAVTLSAYSQTFVSPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Carg22883-RA vs. TrEMBL
Match: tr|A0A068U3S5|A0A068U3S5_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039591001 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 39 SSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 87
          SSLLIG+VGAA+TLSAYSQT +SPT+CIT GL VL+FGLLV EG ISI
Sbjct: 6  SSLLIGIVGAAITLSAYSQTLISPTQCITVGLFVLIFGLLVKEGLISI 53

The following BLAST results are available for this feature:

BLAST of Carg22883-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531694.1	6.9e-20	95.35	uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo]	[more]
XP_022933884.1	1.3e-15	100.00	uncharacterized protein LOC111441164 [Cucurbita moschata]	[more]
XP_022159078.1	9.6e-14	87.50	uncharacterized protein LOC111025520 [Momordica charantia]	[more]
XP_011652232.1	6.2e-13	87.50	PREDICTED: uncharacterized protein LOC105435000 [Cucumis sativus]	[more]
XP_016899638.1	6.2e-13	87.50	PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo]	[more]

BLAST of Carg22883-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29034.1	5.4e-11	72.34	unknown protein	[more]

BLAST of Carg22883-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22883-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUJ5\|A0A1S4DUJ5_CUCME	4.1e-13	87.50	uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=...	[more]
tr\|A0A061EF06\|A0A061EF06_THECC	2.3e-11	79.17	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1	[more]
tr\|A0A1U8MW02\|A0A1U8MW02_GOSHI	3.9e-11	79.17	uncharacterized protein LOC107940765 OS=Gossypium hirsutum OX=3635 GN=LOC1079407...	[more]
tr\|A0A0D2Q3R0\|A0A0D2Q3R0_GOSRA	3.9e-11	79.17	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G239800 PE=4 ...	[more]
tr\|A0A068U3S5\|A0A068U3S5_COFCA	6.6e-11	79.17	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039591001 PE=4 ...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22883	Carg22883	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22883-RA.exon.1	Carg22883-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22883-RA.CDS.1	Carg22883-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22883-RA	Carg22883-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..35