Carg08633-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTGCCTCTCTCTTTTTGCTTTTCGTTGTTCGTCTTAAGATTATGCAACTTTTGTTTGATAGTTGGACCTTTATGTTTGTGGTTTTCGCCTTAGTTCATTTAGTTCATTCTGCTTCTTTATCTCTAAAGCCGTGTACTTCAATATCTGGTTCAAGTACTTTTTGAACTTTGAATAAACCCTAATTTGGTTTAGTTTCCAACAATTTATAGCTTGAACTGCCACGATCTTTTTTTTTTTTTTTTTTTATGACTAATTTTAATACAAAATCTGCTTAGGAAGAACCAGAAAATTTCCGGGAACAGAAAACTCTCTATATGGTAAATTTCAACATATAAGGAACAAAAATTGCATCTAGACTCCAGGCCTGACTGGTATGTCCCAAACCCAAAAGGCAACAACTGTAAAATGAGACTGAAAATCGGCAAAGCATCAAAACATGAAAAGAGTGCTAATTGCGATCTTGATTGCATGATCTGGATTGATTAAATTAACTAGGGACGAATGTTAATTGTGCACGTCGATTCATCTGCTGAGTGCGCTGTTTAATTGCAACTTTCTTGCTATGCACCTCGTAATCACCAAATTGAATAGGAGAGATCGATATTATCATAGATTCATATTGGTTAATTGGATAGTAAACGATTTCTATAAAATTGTCAAATGGATTAAGGTTTACTGATTTTCTTTGTTTAATCTGTTGGTGTTTTACTTATGTTATGGTTAATTGCTCAATGTCTCCGAGTTTTTCCCCTTTGCTTGCATGTATATAGTTGGGAGTCATGTTCTTCAGGTTCACTTTATGTGTTTTCTTCCATAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTGTATTATAGACTATCCAATGACTTTCTTAGTTATTCGAAGGGATTTTGTCAGGATTTGGTTGGCATGCTGACATCTGTTTATGCATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGTATTTCAACTTAAATCCTTTGAAATCTAGTCCTGATGAAATCCTTGCGTGCTTTTTCTTTTTCCTAACTCATGCTTTTTCAATCCTGAAGGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCCATGCAGCTTAATTTTAGTACGGTGAAAATTTATTTCCTCTACACATTTTGAATAAGTACGAAGATCAACTTACATGCCCCTTGTGCATTTTTTCATGTATGAGAGAAGGATTTGATCGCTGCTTGTGTGCATATCTGCCAAGAAATATAGAATCTACTTTAGTTGAAATTACTAGGATATGATCGCTATTTAATCATATCAATTTGGAAGATGTTAGGGAATGTTTCATGGCACTACGAACTTCACATTTCTCTCTCTGAGGCATCCAGAATTTAGGCACATTCACACAAAACGCAGGAACCCACAGATAGTGTTAGGGGAAGTGATTATTACTTGTGAAATCTCTTGTTAGTTTATATGTTTAAAAACAGGTTGGTGATAGATTTAGAGGGAAAACAACTAGAATGCGTTACAAAATGTTCGTACACTTTTTAAGTTTCCAAAAGTTAACACTAGACATACTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTCGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAGACCCTTATAGAGGGAGGGGCATTTGGTTTTTTCTTTTCTTTTCTTTTTTC AACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTCGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAGACCCTTATAGAGGGAGGGGCATTTGGTTTTTTCTTTTCTTTTCTTTTTTC ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGA MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRGAVPSARR
BLAST of Carg08633-RA vs. NCBI nr
Match: XP_022937091.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima] >XP_023534840.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534841.1 small nuclear ribonucleoprotein SmD3b-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of Carg08633-RA vs. NCBI nr
Match: XP_023522400.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49 Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0
BLAST of Carg08633-RA vs. NCBI nr
Match: XP_022940723.1 (small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_022981932.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima]) HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47 Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0
BLAST of Carg08633-RA vs. NCBI nr
Match: XP_022749600.1 (small nuclear ribonucleoprotein SmD3b-like [Durio zibethinus]) HSP 1 Score: 196.4 bits (498), Expect = 5.9e-47 Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 0
BLAST of Carg08633-RA vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo]) HSP 1 Score: 196.1 bits (497), Expect = 7.8e-47 Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0
BLAST of Carg08633-RA vs. TAIR10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 186.4 bits (472), Expect = 1.1e-47 Identity = 106/132 (80.30%), Postives = 112/132 (84.85%), Query Frame = 0
BLAST of Carg08633-RA vs. TAIR10
Match: AT1G76300.1 (snRNP core protein SMD3) HSP 1 Score: 171.8 bits (434), Expect = 2.8e-43 Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg08633-RA vs. TAIR10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 60.8 bits (146), Expect = 7.1e-10 Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 0
BLAST of Carg08633-RA vs. TAIR10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06 Identity = 22/85 (25.88%), Postives = 44/85 (51.76%), Query Frame = 0
BLAST of Carg08633-RA vs. TAIR10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04 Identity = 24/95 (25.26%), Postives = 45/95 (47.37%), Query Frame = 0
BLAST of Carg08633-RA vs. Swiss-Prot
Match: sp|Q9LM92|SMD3B_ARATH (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 2.0e-46 Identity = 106/132 (80.30%), Postives = 112/132 (84.85%), Query Frame = 0
BLAST of Carg08633-RA vs. Swiss-Prot
Match: sp|Q9S7E6|SMD3A_ARATH (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.1e-42 Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg08633-RA vs. Swiss-Prot
Match: sp|P62318|SMD3_HUMAN (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 8.5e-29 Identity = 53/85 (62.35%), Postives = 72/85 (84.71%), Query Frame = 0
BLAST of Carg08633-RA vs. Swiss-Prot
Match: sp|P62320|SMD3_MOUSE (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 8.5e-29 Identity = 53/85 (62.35%), Postives = 72/85 (84.71%), Query Frame = 0
BLAST of Carg08633-RA vs. Swiss-Prot
Match: sp|P62323|SMD3_XENLA (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 8.5e-29 Identity = 53/85 (62.35%), Postives = 72/85 (84.71%), Query Frame = 0
BLAST of Carg08633-RA vs. TrEMBL
Match: tr|A0A1S3BVV0|A0A1S3BVV0_CUCME (small nuclear ribonucleoprotein SmD3a-like OS=Cucumis melo OX=3656 GN=LOC103493808 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 5.1e-47 Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0
BLAST of Carg08633-RA vs. TrEMBL
Match: tr|A0A2I4DPF3|A0A2I4DPF3_9ROSI (small nuclear ribonucleoprotein SmD3b-like OS=Juglans regia OX=51240 GN=LOC108982185 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 8.8e-47 Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0
BLAST of Carg08633-RA vs. TrEMBL
Match: tr|A0A0D2NAV0|A0A0D2NAV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G113900 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 8.8e-47 Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 0
BLAST of Carg08633-RA vs. TrEMBL
Match: tr|A0A2I4FXM1|A0A2I4FXM1_9ROSI (small nuclear ribonucleoprotein SmD3b OS=Juglans regia OX=51240 GN=LOC109002935 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46 Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 0
BLAST of Carg08633-RA vs. TrEMBL
Match: tr|A0A1U8AJM2|A0A1U8AJM2_NELNU (small nuclear ribonucleoprotein SmD3b-like OS=Nelumbo nucifera OX=4432 GN=LOC104603743 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46 Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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