Carg20937 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAGATCTTGTCTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATCATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAAGTTGTACAAATGGGAGGTATAATTCACAACCACTACTCCCCAAAACATGAAACGGAGCTTGCTTGCTGCAATTGAATAAAGGATTAAATGTTACCATATTTTTGTATTGTAATGTCCAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTTACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGACTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCGTTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAATTAGATATCTCATATATTAAATTC ATGTCAGATCTTGTCTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATCATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAAGTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTTACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGACTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCGTTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAATTAGATATCTCATATATTAAATTC ATGTCAGATCTTGTCTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATCATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAAGTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAG MSDLVSDHKCKPMTNIAEFSSSFVCFTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
BLAST of Carg20937 vs. NCBI nr
Match: XP_022927980.1 (zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata]) HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg20937 vs. NCBI nr
Match: XP_023512636.1 (zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31 Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of Carg20937 vs. NCBI nr
Match: XP_022971662.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima]) HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29 Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0
BLAST of Carg20937 vs. NCBI nr
Match: XP_008457866.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X5 [Cucumis melo]) HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18 Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0
BLAST of Carg20937 vs. NCBI nr
Match: XP_016902185.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X2 [Cucumis melo]) HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18 Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0
BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S3C6H5|A0A1S3C6H5_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18 Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0
BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S4E2I3|A0A1S4E2I3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18 Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0
BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S4E1T6|A0A1S4E1T6_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18 Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0
BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A0A0LQ19|A0A0A0LQ19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17 Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 0
BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S4E1S9|A0A1S4E1S9_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 9.9e-17 Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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