CsaV3_7G018410 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G018410
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 8309299 .. 8310099 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGATTCCCTAAATTTTCAAGTTAATTTTCTAACTAAACTTTTTACTTCTCTTGTGCAAGAGATTCCCAAAGATGTCTCTTGTGGAATATATGGCTTCCAAGACCACCAAAATAATCAATGTCTAATGTATAAAGAGGTAAGTGTCATGGGAGGTTACAACGCTCACAACTCTGGATACACTTCTTCTCCCTCATCACCATCACAAGGTACATATTTAGAAGAATTAATCTCAGGAATTGCTTATAGCTTAGATAGTTTTGAAACTGATTTTGAGAAGAATTTAGCTAAGTTGAGTGAATACACTGTTAGTTTAACTGGAAGCATGAGAAATGACTTAGCTAAGTTGAATGAACAAACCCTTAGTCCAACTAGAGCCGTGAATAATGACTTAGAAACCATGAAAGCATCCATATCTGAGATTGAAAATAAGCTCGATCAATTAGCAACAAACATTCATGAAACAGAAGAAAATGATGAACTTTTTGCCCATGCATATGAGAACGATGTTACTTTAGAAAGTAGAAAAATTTTCAATGATAAAGATGACGTAAACCCTTCTAGTGATCATGTTTCATTAAGTGCATTTGATACCTTAGAATCATTAGAGACACTAGAAAAGCATGGTAATTTCAATGAGATTGTTGATCAAGCAACTTTAGAACATGTTGAAATTGAAGCTGCTAAGAACGACCCTAGTGACGATGATCTCTCTATCTTCCTTGGCTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTGATAATGTTGAAACACATGAACAACATGCTTTAG

mRNA sequence

ATGGAACAAGATTCCCTAAATTTTCAAGTTAATTTTCTAACTAAACTTTTTACTTCTCTTGTGCAAGAGATTCCCAAAGATGTCTCTTGTGGAATATATGGCTTCCAAGACCACCAAAATAATCAATGTCTAATGTATAAAGAGGTAAGTGTCATGGGAGGTTACAACGCTCACAACTCTGGATACACTTCTTCTCCCTCATCACCATCACAAGGTACATATTTAGAAGAATTAATCTCAGGAATTGCTTATAGCTTAGATAGTTTTGAAACTGATTTTGAGAAGAATTTAGCTAAGTTGAGTGAATACACTGTTAGTTTAACTGGAAGCATGAGAAATGACTTAGCTAAGTTGAATGAACAAACCCTTAGTCCAACTAGAGCCGTGAATAATGACTTAGAAACCATGAAAGCATCCATATCTGAGATTGAAAATAAGCTCGATCAATTAGCAACAAACATTCATGAAACAGAAGAAAATGATGAACTTTTTGCCCATGCATATGAGAACGATGTTACTTTAGAAAGTAGAAAAATTTTCAATGATAAAGATGACGTAAACCCTTCTAGTGATCATGTTTCATTAAGTGCATTTGATACCTTAGAATCATTAGAGACACTAGAAAAGCATGGTAATTTCAATGAGATTGTTGATCAAGCAACTTTAGAACATGTTGAAATTGAAGCTGCTAAGAACGACCCTAGTGACGATGATCTCTCTATCTTCCTTGGCTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTGATAATGTTGAAACACATGAACAACATGCTTTAG

Coding sequence (CDS)

ATGGAACAAGATTCCCTAAATTTTCAAGTTAATTTTCTAACTAAACTTTTTACTTCTCTTGTGCAAGAGATTCCCAAAGATGTCTCTTGTGGAATATATGGCTTCCAAGACCACCAAAATAATCAATGTCTAATGTATAAAGAGGTAAGTGTCATGGGAGGTTACAACGCTCACAACTCTGGATACACTTCTTCTCCCTCATCACCATCACAAGGTACATATTTAGAAGAATTAATCTCAGGAATTGCTTATAGCTTAGATAGTTTTGAAACTGATTTTGAGAAGAATTTAGCTAAGTTGAGTGAATACACTGTTAGTTTAACTGGAAGCATGAGAAATGACTTAGCTAAGTTGAATGAACAAACCCTTAGTCCAACTAGAGCCGTGAATAATGACTTAGAAACCATGAAAGCATCCATATCTGAGATTGAAAATAAGCTCGATCAATTAGCAACAAACATTCATGAAACAGAAGAAAATGATGAACTTTTTGCCCATGCATATGAGAACGATGTTACTTTAGAAAGTAGAAAAATTTTCAATGATAAAGATGACGTAAACCCTTCTAGTGATCATGTTTCATTAAGTGCATTTGATACCTTAGAATCATTAGAGACACTAGAAAAGCATGGTAATTTCAATGAGATTGTTGATCAAGCAACTTTAGAACATGTTGAAATTGAAGCTGCTAAGAACGACCCTAGTGACGATGATCTCTCTATCTTCCTTGGCTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTGATAATGTTGAAACACATGAACAACATGCTTTAG

Protein sequence

MEQDSLNFQVNFLTKLFTSLVQEIPKDVSCGIYGFQDHQNNQCLMYKEVSVMGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSLTGSMRNDLAKLNEQTLSPTRAVNNDLETMKASISEIENKLDQLATNIHETEENDELFAHAYENDVTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML

Homology

[Close]

BLAST of CsaV3_7G018410 vs. NCBI nr
Match: KGN44062.1 (hypothetical protein Csa_7G157510 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 2.5e-92
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 52  MGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSXXXXX 111
           MGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSXXXXX
Sbjct: 1   MGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSXXXXX 60

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEENDELFAHAYEND 171
           XXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEENDELFAHAYEND
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEENDELFAHAYEND 120

Query: 172 VTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAK 231
           VTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAK
Sbjct: 121 VTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAK 180

Query: 232 NDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML 267
           NDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML
Sbjct: 181 NDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML 215

[Close]

BLAST of CsaV3_7G018410 vs. NCBI nr
Match: KGN47238.1 (hypothetical protein Csa_6G224020 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 85/120 (70.83%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 137 KASISEIENKLDQLATNIHETEENDELFAHAYENDVTLESRKIFNDKDDVNPSSDHVSLS 196
           KAS  EI NKLDQL T+I E E NDEL +HAY NDVTLESRKIFNDKDDVNPSSDHVSLS
Sbjct: 2   KASTFEIGNKLDQLETHILEMEGNDELPSHAYVNDVTLESRKIFNDKDDVNPSSDHVSLS 61

Query: 197 AFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDDLSIFLGFVTSINDEHALV 256
           AF TLESLETLEKHGNFNEI                    DDLSIFL F+TSIN+EHALV
Sbjct: 62  AFHTLESLETLEKHGNFNEI--------------------DDLSIFLDFITSINEEHALV 101

[Close]

BLAST of CsaV3_7G018410 vs. NCBI nr
Match: KGN47319.1 (hypothetical protein Csa_6G295940 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 6.9e-26
Identity = 87/202 (43.07%), Postives = 111/202 (54.95%), Query Frame = 0


Query: 4   DSLNFQVNFLTKLFTSLVQ-EIPKDVSCGIYGFQDHQNNQCLMYKEVSVMGGY------- 63
           +S+  QVN LTK+FTS V+ E+PK VSCG+ G   H N+QC   KEVS +GGY       
Sbjct: 9   NSVKEQVNLLTKMFTSFVKGEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQS 68

Query: 64  NAHNSGYTSSPS----------------SPSQGTYLEELISGIAYSLDSFETDFEKNLAK 123
           NA+NSG+   PS                S S+GTYLEE++S +A+S ++F++DFEKNLAK
Sbjct: 69  NAYNSGWRDDPSLRWGPQEPKHNNTPSTSSSKGTYLEEIVSKLAFSSNNFKSDFEKNLAK 128

Query: 124 LSEYTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEE 179
           LSEYTVS                              KASISE+ NKLDQLA    +TE 
Sbjct: 129 LSEYTVS------------------STGAIKNDVENMKASISELGNKLDQLAIQFLKTEG 188

[Close]

BLAST of CsaV3_7G018410 vs. NCBI nr
Match: KGN53819.1 (hypothetical protein Csa_4G151750 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 203 SLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDDLSIFLGFVTSINDEHALV 257
           ++ET E H  FNE+++Q TLE+ + + AK  PSD+DLSIFL FVTSINDEH LV
Sbjct: 11  TIETFE-HDKFNELIEQETLEYFDNKFAKEKPSDNDLSIFLDFVTSINDEHVLV 63

[Close]

BLAST of CsaV3_7G018410 vs. TrEMBL
Match: tr|A0A0A0K703|A0A0A0K703_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G157510 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.6e-92
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 52  MGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSXXXXX 111
           MGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSXXXXX
Sbjct: 1   MGGYNAHNSGYTSSPSSPSQGTYLEELISGIAYSLDSFETDFEKNLAKLSEYTVSXXXXX 60

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEENDELFAHAYEND 171
           XXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEENDELFAHAYEND
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEENDELFAHAYEND 120

Query: 172 VTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAK 231
           VTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAK
Sbjct: 121 VTLESRKIFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAK 180

Query: 232 NDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML 267
           NDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML
Sbjct: 181 NDPSDDDLSIFLGFVTSINDEHALVIMLKHMNNML 215

[Close]

BLAST of CsaV3_7G018410 vs. TrEMBL
Match: tr|A0A0A0KCG4|A0A0A0KCG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G224020 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 85/120 (70.83%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 137 KASISEIENKLDQLATNIHETEENDELFAHAYENDVTLESRKIFNDKDDVNPSSDHVSLS 196
           KAS  EI NKLDQL T+I E E NDEL +HAY NDVTLESRKIFNDKDDVNPSSDHVSLS
Sbjct: 2   KASTFEIGNKLDQLETHILEMEGNDELPSHAYVNDVTLESRKIFNDKDDVNPSSDHVSLS 61

Query: 197 AFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDDLSIFLGFVTSINDEHALV 256
           AF TLESLETLEKHGNFNEI                    DDLSIFL F+TSIN+EHALV
Sbjct: 62  AFHTLESLETLEKHGNFNEI--------------------DDLSIFLDFITSINEEHALV 101

[Close]

BLAST of CsaV3_7G018410 vs. TrEMBL
Match: tr|A0A0A0KEQ8|A0A0A0KEQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 87/202 (43.07%), Postives = 111/202 (54.95%), Query Frame = 0


Query: 4   DSLNFQVNFLTKLFTSLVQ-EIPKDVSCGIYGFQDHQNNQCLMYKEVSVMGGY------- 63
           +S+  QVN LTK+FTS V+ E+PK VSCG+ G   H N+QC   KEVS +GGY       
Sbjct: 9   NSVKEQVNLLTKMFTSFVKGEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQS 68

Query: 64  NAHNSGYTSSPS----------------SPSQGTYLEELISGIAYSLDSFETDFEKNLAK 123
           NA+NSG+   PS                S S+GTYLEE++S +A+S ++F++DFEKNLAK
Sbjct: 69  NAYNSGWRDDPSLRWGPQEPKHNNTPSTSSSKGTYLEEIVSKLAFSSNNFKSDFEKNLAK 128

Query: 124 LSEYTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASISEIENKLDQLATNIHETEE 179
           LSEYTVS                              KASISE+ NKLDQLA    +TE 
Sbjct: 129 LSEYTVS------------------STGAIKNDVENMKASISELGNKLDQLAIQFLKTEG 188

[Close]

BLAST of CsaV3_7G018410 vs. TrEMBL
Match: tr|A0A0A0KY93|A0A0A0KY93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G151750 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 203 SLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDDLSIFLGFVTSINDEHALV 257
           ++ET E H  FNE+++Q TLE+ + + AK  PSD+DLSIFL FVTSINDEH LV
Sbjct: 11  TIETFE-HDKFNELIEQETLEYFDNKFAKEKPSDNDLSIFLDFVTSINDEHVLV 63

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44062.1	2.5e-92	100.00	hypothetical protein Csa_7G157510 [Cucumis sativus]	[more]
KGN47238.1	2.2e-32	70.83	hypothetical protein Csa_6G224020 [Cucumis sativus]	[more]
KGN47319.1	6.9e-26	43.07	hypothetical protein Csa_6G295940 [Cucumis sativus]	[more]
KGN53819.1	1.9e-07	61.11	hypothetical protein Csa_4G151750 [Cucumis sativus]	[more]

BLAST of CsaV3_7G018410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K703\|A0A0A0K703_CUCSA	1.6e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G157510 PE=4 SV=1	[more]
tr\|A0A0A0KCG4\|A0A0A0KCG4_CUCSA	1.5e-32	70.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G224020 PE=4 SV=1	[more]
tr\|A0A0A0KEQ8\|A0A0A0KEQ8_CUCSA	4.5e-26	43.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1	[more]
tr\|A0A0A0KY93\|A0A0A0KY93_CUCSA	1.2e-07	61.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G151750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018410.1	CsaV3_7G018410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..160

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G018410	CSPI07G08700	Wild cucumber (PI 183967)	cpicucB418

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G018410	Silver-seed gourd	carcucB0924
CsaV3_7G018410	Silver-seed gourd	carcucB0946
CsaV3_7G018410	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G018410	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G018410	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G018410	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G018410	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G018410	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G018410	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G018410	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G018410	Melon (DHL92) v3.5.1	cucmeB556
CsaV3_7G018410	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G018410	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G018410	Watermelon (97103) v1	cucwmB594
CsaV3_7G018410	Watermelon (97103) v2	cucwmbB595
CsaV3_7G018410	Wax gourd	cucwgoB734