CsaV3_6G039620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G039620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 22752025 .. 22752216 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

mRNA sequence

ATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

Coding sequence (CDS)

ATGATCGATAAAAAACGGGAACGCAGCATCGACGTAACAAGCCAACAGATTAGGGGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCTTCCTACACGTGGCCACTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCACCCAAAGACAAGTAAATGAAGAACCGTTGATTTGGCTGACGGTGAGATGA

Protein sequence

MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWLTVR
Homology
[Close]
BLAST of CsaV3_6G039620 vs. NCBI nr
Match: KGN48156.1 (hypothetical protein Csa_6G445200 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60
          MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL
Sbjct: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60

Query: 61 TVR 64
          TVR
Sbjct: 61 TVR 63

[Close]
BLAST of CsaV3_6G039620 vs. TrEMBL
Match: tr|A0A0A0KK67|A0A0A0KK67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60
          MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL
Sbjct: 1  MIDKKRERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGTTQRQVNEEPLIWL 60

Query: 61 TVR 64
          TVR
Sbjct: 61 TVR 63

The following BLAST results are available for this feature:
BLAST of CsaV3_6G039620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48156.11.9e-27100.00hypothetical protein Csa_6G445200 [Cucumis sativus][more]
BLAST of CsaV3_6G039620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G039620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G039620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KK67|A0A0A0KK67_CUCSA1.3e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G039620.1CsaV3_6G039620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G039620CSPI06G24410Wild cucumber (PI 183967)cpicucB363
CsaV3_6G039620ClCG04G009100Watermelon (Charleston Gray)cucwcgB485
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G039620Wax gourdcucwgoB543
CsaV3_6G039620Wax gourdcucwgoB649
CsaV3_6G039620Cucumber (Chinese Long) v3cuccucB136
CsaV3_6G039620Cucumber (Chinese Long) v3cuccucB210
CsaV3_6G039620Silver-seed gourdcarcucB0187
CsaV3_6G039620Silver-seed gourdcarcucB0270
CsaV3_6G039620Silver-seed gourdcarcucB0280
CsaV3_6G039620Silver-seed gourdcarcucB0451
CsaV3_6G039620Silver-seed gourdcarcucB0586
CsaV3_6G039620Cucumber (Gy14) v2cgybcucB141
CsaV3_6G039620Cucumber (Gy14) v2cgybcucB298
CsaV3_6G039620Cucumber (Gy14) v2cgybcucB299
CsaV3_6G039620Cucumber (Gy14) v2cgybcucB304
CsaV3_6G039620Cucumber (Gy14) v1cgycucB171
CsaV3_6G039620Cucumber (Gy14) v1cgycucB476
CsaV3_6G039620Cucumber (Gy14) v1cgycucB587
CsaV3_6G039620Cucurbita maxima (Rimu)cmacucB0308
CsaV3_6G039620Cucurbita maxima (Rimu)cmacucB0672
CsaV3_6G039620Cucurbita maxima (Rimu)cmacucB0810
CsaV3_6G039620Cucurbita maxima (Rimu)cmacucB0994
CsaV3_6G039620Cucurbita maxima (Rimu)cmacucB1036
CsaV3_6G039620Cucurbita moschata (Rifu)cmocucB0302
CsaV3_6G039620Cucurbita moschata (Rifu)cmocucB0656
CsaV3_6G039620Cucurbita moschata (Rifu)cmocucB0794
CsaV3_6G039620Cucurbita moschata (Rifu)cmocucB0979
CsaV3_6G039620Cucurbita moschata (Rifu)cmocucB1020
CsaV3_6G039620Cucurbita pepo (Zucchini)cpecucB0093
CsaV3_6G039620Cucurbita pepo (Zucchini)cpecucB0365
CsaV3_6G039620Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G039620Cucurbita pepo (Zucchini)cpecucB0778
CsaV3_6G039620Cucurbita pepo (Zucchini)cpecucB1076
CsaV3_6G039620Wild cucumber (PI 183967)cpicucB176
CsaV3_6G039620Wild cucumber (PI 183967)cpicucB366
CsaV3_6G039620Bottle gourd (USVL1VR-Ls)cuclsiB444
CsaV3_6G039620Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G039620Bottle gourd (USVL1VR-Ls)cuclsiB474
CsaV3_6G039620Bottle gourd (USVL1VR-Ls)cuclsiB516
CsaV3_6G039620Melon (DHL92) v3.5.1cucmeB497
CsaV3_6G039620Melon (DHL92) v3.5.1cucmeB522
CsaV3_6G039620Melon (DHL92) v3.6.1cucmedB480
CsaV3_6G039620Melon (DHL92) v3.6.1cucmedB427
CsaV3_6G039620Melon (DHL92) v3.6.1cucmedB483
CsaV3_6G039620Melon (DHL92) v3.6.1cucmedB510
CsaV3_6G039620Watermelon (Charleston Gray)cucwcgB446
CsaV3_6G039620Watermelon (Charleston Gray)cucwcgB462
CsaV3_6G039620Watermelon (97103) v1cucwmB477
CsaV3_6G039620Watermelon (97103) v1cucwmB492
CsaV3_6G039620Watermelon (97103) v1cucwmB530
CsaV3_6G039620Watermelon (97103) v1cucwmB540
CsaV3_6G039620Watermelon (97103) v2cucwmbB436
CsaV3_6G039620Watermelon (97103) v2cucwmbB451
CsaV3_6G039620Watermelon (97103) v2cucwmbB472