CsaV3_5G013860.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G013860.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 10651641 .. 10651823 (-)
Sequence length	183

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGATTTGCAAACGGATTCACAAGTTCAATCACAGACTGTTAATCAACTAAAAGCAATAACAGATGGAGGAGAAGGAACGAGCGATGTCAAGCAAAAAGGAGTTGTGGGTAGACCACAACAACAAGGAAAGATGTATGCTCTAGGTCAACGGAAAGTGGAAGAGACACCGAACACATTACTG

mRNA sequence

TTTGATTTGCAAACGGATTCACAAGTTCAATCACAGACTGTTAATCAACTAAAAGCAATAACAGATGGAGGAGAAGGAACGAGCGATGTCAAGCAAAAAGGAGTTGTGGGTAGACCACAACAACAAGGAAAGATGTATGCTCTAGGTCAACGGAAAGTGGAAGAGACACCGAACACATTACTG

Coding sequence (CDS)

TTTGATTTGCAAACGGATTCACAAGTTCAATCACAGACTGTTAATCAACTAAAAGCAATAACAGATGGAGGAGAAGGAACGAGCGATGTCAAGCAAAAAGGAGTTGTGGGTAGACCACAACAACAAGGAAAGATGTATGCTCTAGGTCAACGGAAAGTGGAAGAGACACCGAACACATTACTG

Protein sequence

FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTLL

Homology

[Close]

BLAST of CsaV3_5G013860.1 vs. NCBI nr
Match: KGN49555.1 (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 60
           FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL
Sbjct: 343 FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 402

Query: 61  L 62
           L
Sbjct: 403 L 403

[Close]

BLAST of CsaV3_5G013860.1 vs. NCBI nr
Match: XP_016901625.1 (PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 6.8e-06
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 3   LQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 61
           ++ D  V+S T+ Q +  T  GEGTS  +QKGVVGRP QQGK+YA+ Q++ E+ P+ +
Sbjct: 326 VRRDQGVESHTIEQPRISTTVGEGTSGARQKGVVGRPGQQGKVYAMTQQEAEDAPDVI 383

[Close]

BLAST of CsaV3_5G013860.1 vs. TrEMBL
Match: tr|A0A0A0KIM1|A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 60
           FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL
Sbjct: 343 FDLQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 402

Query: 61  L 62
           L
Sbjct: 403 L 403

[Close]

BLAST of CsaV3_5G013860.1 vs. TrEMBL
Match: tr|A0A1S4E0X6|A0A1S4E0X6_CUCME (uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 3   LQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 61
           ++ D  V+S T+ Q +  T  GEGTS  +QKGVVGRP QQGK+YA+ Q++ E+ P+ +
Sbjct: 326 VRRDQGVESHTIEQPRISTTVGEGTSGARQKGVVGRPGQQGKVYAMTQQEAEDAPDVI 383

[Close]

BLAST of CsaV3_5G013860.1 vs. TrEMBL
Match: tr|A0A1S3CNE9|A0A1S3CNE9_CUCME (uncharacterized protein LOC103502884 OS=Cucumis melo OX=3656 GN=LOC103502884 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-04
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 3  LQTDSQVQSQTVNQLKAITDGGEGTSDVKQKGVVGRPQQQGKMYALGQRKVEETPNTL 61
          +Q D  V SQ V Q + +    EGT+  +QK VVGRP+Q+GK+YA+ Q++VE+T + +
Sbjct: 39 VQRDQGVGSQAVKQSRFLATLTEGTNGARQKEVVGRPRQRGKVYAMTQQEVEDTSDVI 96

The following BLAST results are available for this feature:

BLAST of CsaV3_5G013860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49555.1	2.5e-24	100.00	hypothetical protein Csa_5G001020 [Cucumis sativus]	[more]
XP_016901625.1	6.8e-06	48.28	PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo]	[more]

BLAST of CsaV3_5G013860.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G013860.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G013860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIM1\|A0A0A0KIM1_CUCSA	1.7e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001020 PE=4 SV=1	[more]
tr\|A0A1S4E0X6\|A0A1S4E0X6_CUCME	4.5e-06	48.28	uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=...	[more]
tr\|A0A1S3CNE9\|A0A1S3CNE9_CUCME	9.4e-04	44.83	uncharacterized protein LOC103502884 OS=Cucumis melo OX=3656 GN=LOC103502884 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G013860	CsaV3_5G013860	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G013860.1.cds1	CsaV3_5G013860.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G013860.1.exon1	CsaV3_5G013860.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G013860.1	CsaV3_5G013860.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..61