CsaV3_5G001450 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATCGTTTGTCTTTTTTTATTAAAGAAAAGAAAAATCAAATTTTTAAAAAGGAATGATCTTTGTTGAGGGTGTCTTCGATGTGGAAGTGAGATTTGGCGCCTCAGTTGCTAAAGCAATATCCTTGTGTTTGTTGAAAGGCTACAAAATAACGTGGATTCATATACTCTTCTCATAAATCACGTAATTTCAAAACTCATTTTTTCTTTGCCTTTTCAATTCTCACCTAAAAGAAAAAGGATAAAGGGGGTTGAGAATTTCCCTATCCTTTTTTTCTTATTTCACCTCTGTTTCTACTGCTTCAACTGTTGAATCTTTAATCCTTCAAGTCTAAGTCTCCCAGGTACGAACCCTTTTGATTTTATTCGCTTTTGTTCCTGATTTTTGCTACTGTTGCTCTCCTAACCTCGTTTTCTATGTGTAATGCAACTCTTGTTTGGTTGGAAGCAATTTTGGTTTCATTTTGTTGATGGGTTTTGATTTCTTGAATTGGGTATTGTAGATTGAGGCTCGTTTGTGGTTTTGTAGTTCAATTGTTACATGTAATGCAATGTTCTCAATGTATTTTGGGTATTTTGTGTATTTTGTGTCTTAGTCGTTTGTTTGGGACTGAAAATAAATTTGTTAGGTGGAAATTATGCTTTCAATTGGTTGGTGGGTTTGTTTCGCTTTATTGGTGATGTGGGATGAACACTGAGTTGCAGATATTTTCTATTCAATTTAGGGTGTGAGAGAAAATTGAGCAAAGGGACGACTAGATGATGCTCAGAAATGTTAGTCAAAGACTTTTGTTGTTCTATTGATTCAAGTTTGTGGTGTTTGAAATTCAAATGAACCTTTCGATGGATTGCCATTCAAATGATGTAAAGGCCAAGGCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACCCTATTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGTGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGGTACATTTGAGTTGCTTCTGCTCCATTTAAAATGCATTTTCAATTGTTTTGTTCATTTGTGCTGCTACATTTTGGCAGAACCTTTTTTAGTTAGTTCCTCCTTCCTCATACTTTTGTTACTTGCGTTGTTTGTTCATTGTTTGTCATCCAAAAAACATTAGATAAACTCCTAAGTTTGCTTTTTGAAAATTGATACTTTATGTGGTTTGTTAAACCACCACTAAATTGATAAGGTTAAACCATGAATCAAATATGCGATCTATTTATGTAGATTTGGGGGTGGAAATGACTTTGTTGGTGAGGAGAGTTTGACTGAATTCTAAAAGCTTAAGTAGATGGAAGATATTTAATTTGTCTGTCACAGTAAGATTAGAGCCGCAAAAATGAGTATACTTCAATGGTTAAGGCATTTCCCTTGAGGTCGGAGGTTCAAGTCTTTGCCACACATTTGTTGCACTAAAGACTAAAGAGAAAAGATTAAATCCCTATTTTTTTTTACATTGTAGATGACACTTTTTCAAATATTGTTGTCTTTCCACAATTACTATTGGCTTCAATTATCTGGTTAATGTGTTGGAAAATGTAAAGGAAGTCGAGGCCATTAAGCCTGAGTACTATTATTCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACCAAAGGATCAAACAGATGTGAGATATGCCAGTAAGTTGCTTTTTTAGAGAATGCCATTTATTAAATTAAACCAATCATATGGTGTGTCAAGGGCATTTTGAAACGCAATTTGCTAAACTTTTCAGGGTTGTAGCGGCAAATGTATCACCTCCACAGTCACATCATGGTGTAGGTACTCTGTAGCTCTTGATGCAATGATTATAAACTTATAAAATGAAACGTCTCAATGAATATGGAATCAATTTTTTCGTCCTTTCTACAGTATTAGCGTTATTAGTTGATGACCAGTATCATGCTTTAGTTTTGCTTTTGCTAATTGCTACAGTTCCTTGCTTTCTTTTCCTACATTAGGAAGAAAGTTATCATGACATTTGATCTGTAATCTTTGCTTCTGAGTGTTTCTTTTATTTTGAAGGGCTTTACAAAGTAGCATAGTGAATATTTCTAAATAATGTTTTGCTTACCAGATTTGCAATGAAACTCAATAAGAATTATAGGCAAGGACAACTACGACCTTACTTATTCCGTAGGTTGTACAACCGTTTCCTTTTAAGTTCTAATACTTATAGGCAATGACTGCTGCTTCATCCTTCACAATTCTTCCTCTTCTTGGTGAATCAGAAATGTTGAGAAAGAGGAAAAGTGCAAAGTGGCAAAGATTCACTCGCCCACTAAACCACATCGAACAAAATCGAACTCATAAACTAAATAAATGGACATGAAAATTATTATGCTTCTGTTTTCTGTATATAGTCTTTACCTTTCAAACTATTGATTCATGAGAAATGCAGTTTAGAACCTTACAATTTAACATTGAACTTATGATTCATGGATGTCATATCGAAATAACCTGAACTATGATTATTCCCTTATTTGACATGCACAGACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGGTAGCAAGATTTGATTTTGATTTTTCCAGTGATATGCTTGTTTCATTTGTTGTTAAAAAACATGAAACATTTTTCATAATTATTTATGCAACAGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGTACGTTTTTGTCGATCGATACCGATCTATACTTCTGTTTCCTTGTCGAGATATTTATGGTTAGTGAAACTTCGAAGAACAGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCATCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCGAATGTTTGCTTAAAAAAGAAGAAAAAGGAAACGTTATATAAATAAAGTGAAAATATATCTTATTCTTGTTTTTTTTCTCTACGTGTATTGGCCTCTTGATCAAACATATTAGTTTAACTTGTTGTGTAAATTTGACAATAAATCAGTAAATATGTTTACTTCAATTGCAAGTGGTAAGCAATAAAATTTTATGTTTTGACGACGTTTTATATTAG ATGAACCTTTCGATGGATTGCCATTCAAATGATGTAAAGGCCAAGGCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACCCTATTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGTGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACCAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCACCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCATCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG ATGAACCTTTCGATGGATTGCCATTCAAATGATGTAAAGGCCAAGGCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACCCTATTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGTGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACCAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCACCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCATCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSSRGSQRVESNVTIGYFPAI
BLAST of CsaV3_5G001450 vs. NCBI nr
Match: XP_004145881.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Cucumis sativus] >KGN49961.1 hypothetical protein Csa_5G146840 [Cucumis sativus]) HSP 1 Score: 525.8 bits (1353), Expect = 8.5e-146 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. NCBI nr
Match: XP_011654668.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis sativus] >XP_011654669.1 PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis sativus]) HSP 1 Score: 521.2 bits (1341), Expect = 2.1e-144 Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. NCBI nr
Match: XP_008437468.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Cucumis melo]) HSP 1 Score: 488.8 bits (1257), Expect = 1.2e-134 Identity = 248/262 (94.66%), Postives = 249/262 (95.04%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. NCBI nr
Match: XP_008437466.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo] >XP_016903259.1 PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo]) HSP 1 Score: 484.2 bits (1245), Expect = 2.8e-133 Identity = 248/263 (94.30%), Postives = 249/263 (94.68%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. NCBI nr
Match: XP_011654670.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH9 isoform X3 [Cucumis sativus]) HSP 1 Score: 469.2 bits (1206), Expect = 9.5e-129 Identity = 243/262 (92.75%), Postives = 244/262 (93.13%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TAIR10
Match: AT2G45530.1 (RING/U-box superfamily protein) HSP 1 Score: 258.1 bits (658), Expect = 6.0e-69 Identity = 137/218 (62.84%), Postives = 161/218 (73.85%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TAIR10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 68.2 bits (165), Expect = 8.8e-12 Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TAIR10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 65.5 bits (158), Expect = 5.7e-11 Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TAIR10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 58.2 bits (139), Expect = 9.1e-09 Identity = 29/72 (40.28%), Postives = 37/72 (51.39%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TAIR10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 56.2 bits (134), Expect = 3.5e-08 Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TrEMBL
Match: tr|A0A0A0KQJ1|A0A0A0KQJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146840 PE=4 SV=1) HSP 1 Score: 525.8 bits (1353), Expect = 5.6e-146 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TrEMBL
Match: tr|A0A1S3AU35|A0A1S3AU35_CUCME (E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 488.8 bits (1257), Expect = 7.6e-135 Identity = 248/262 (94.66%), Postives = 249/262 (95.04%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TrEMBL
Match: tr|A0A1S3AU77|A0A1S3AU77_CUCME (E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 484.2 bits (1245), Expect = 1.9e-133 Identity = 248/263 (94.30%), Postives = 249/263 (94.68%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TrEMBL
Match: tr|A0A1S4E4V2|A0A1S4E4V2_CUCME (E3 ubiquitin-protein ligase MARCH9 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 432.2 bits (1110), Expect = 8.5e-118 Identity = 229/262 (87.40%), Postives = 231/262 (88.17%), Query Frame = 0
BLAST of CsaV3_5G001450 vs. TrEMBL
Match: tr|A0A1S4E4V4|A0A1S4E4V4_CUCME (E3 ubiquitin-protein ligase MARCH9 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 1.9e-117 Identity = 229/262 (87.40%), Postives = 230/262 (87.79%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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