CsaV3_4G029170 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATCGTATGTATCATTTTTTGGTACTCAACCTAAATGTAGTAAGTATAACATTTGTTAAAACTTTATATCAAATGTATTTTTCTTTATTAATAAAATTTCAAAATGTATTTTTTAAAAAGAAAATTATAAAATTAACCCATTATTTATTTATTTATTTTGTCATTTCTTCTCACTTCTCTACTAATTAGCCATACTTAGCCATACGGCTTCACTTTGGCTGTAAACTCCGCCTCCTCTCTCAACCGTCTCTTCCGGCACACTTAACGGGAGATTTCCCAATTTCCGACTCATGGGCGGCGATCTACGCTTCGAGATCTCTCAAAATGCTTACATCAAACTTGTTCTCCATGCCCTAAAGCACCGGACCACCGCCGTCAATGGAGTCCTTCTAGGTCGCATCTCCGGTCCCAATGACGTCATTGAAATTTCCGATTCCGTCCCTCTCTTCCACTCCAGCATCGGTCTCCTTCCTCAGCTCGAGATATCTCTCCTTCTGGTACTCCTTTGAACCATTTTACATCGGTATTTCATGTTTAGGTTTATGCAAACTGGTTGCTCGTGTGCGAATTTGTTGTGTTTGATGCCATGTTTACTCCTTTTCACTTCCTATTTGAGATCTGTGATTGATGAGGTCGTGGACATGCTTGATTTGCTATCAGATTGAAGAATACTATGCGGCTAAGGGATTGAATATTGTGGGGTACTTTCATGCCAATGAGCGATTTGATGACTATGAGGTCGGCGGTGTAGCCAAGAATATTGGTGATCATATTTCTCGATTTTTTCCACATGCTGCTCTTCTTTTGGTAAGAATTGTCCTATTGTGCTTCATCTGTGCTGTTTTGTTTTGTATATTTCGTTTTGTTTGACTTATGCTCCTCTGCAGTTAGATCACAGGAAACTTGAAGCTTTGCCGAAGAGAAAGGATAGAAGCCCTGTAATGGAGGTGAGTTTATCGCTATAGAATTCTTATCATGGTTTTGTAAATTTATTTGAACGCTACATTAGAATTGCCTCAATGAATTTCCACCATATTTTCTCTTGTACTTTTGGTTGAAAATCATTTGAAGGAGCAAAATTTTATCTCATGAACATGCCGAATTTGAATATTGTTGGTATTCAAGGACTGTGGAACATCGTAAAGTAGCTTTGTAACATTGTGAATTCATAATTCATCCGACAATTGAGGGGATATTCTTTTTAGGTTTCCCAAATGCTGGATTTGACCTTAAACTAAAAGGTCACGAGAATGCTTTATAGTATCGTCTTCTTTAGACAATTTCTTGCTTCTCTTCCATTCATGGAGAGTTGAATGTTATGGCAATATCATTTATTATTGCTGATGCTCTTTGCAATTGCAATATAGGAAAAAGTATGCTGGAGATTTTTACTGACTTTCTTACTCGTTATCATAGAATAGAGCCAGTGGTAGTAAGTAGTAACTAGATCTTCAAATTTATTTGGTTTTCTGAATCTGTTTCAATGTTCTCTAAATTTTGTTGGCTTGTACTGATTCTGCATTGGATTTGGGTACAGCTTGTGGGGTTTCTTTTAGGATGTGAAAGTTTGAGAGAGGCAATGGGAGTGTGATCTCTAATTTTGGTCGGAGCTGCTCCGGCGTTATTGTATTGTAGGATTTCATCAGATGCTCAGCATGGAATCTGTGGATGGGTCTAGGAGAAACTTCAATAGAATCTTTTTTACCCTATAGGTGGAGAGTCATTCCACTCCTTCATTTAGTTTTCCCCCACCACGGAGAGGGCTTATGTTTTAGGTGGATTCTCCGTGGTGGGGAGGCAATGAAGTGGATTTCTTTATCTCTTTCCTTTTGGGGTCTTCTATGGACTTTCAAAATTCAACCCAGCTATCCAAAAGTGGTGGCTTGAAGCTATATGTTTTTTCTATTGTAAATCTTGTTAGGGTTTTTGGTGCAAGACAAATTTAATTGTTCGAAGTTCAGTGTACAAACAAAGATTGAGAGATTGGGTGTTGGAGGAATGCATACCATCTATATTGTGGAGTGGGATAGACCTGGATGTTTATATTCTCCTTTTATTCATTTAACTTCGCAAGTAATTTTGGATTTCGTGAATCAACCTTATTTGATCATTCCCTTCTGCATTTTCCTAAAAAGGAAAAAATGGGTTTTATCCTGTTGGAGTTTCTTGTTTTACCAGCTACCTTGGGTTGGACTAGTGACTAAGGGCCAAAGAGAGGACAAGTTTAAGTTATGGCGATCGGCCATCTTCATTAGAATTCTTTGAATTTCTCTTTGGTACTTAAATGTAGCAGAGTGGTCATCTGGTGAAAGAATTTGGGTCGGAAGGGAGAATCATGGGTATCAGATTTGTTTCCAAATGGATTCCTACACTATTATATAGAATCTATGATACTTCGTTTGAGAAAAAGAATCTGTATTGGATGTTGGTTTGTTCAGGTATGCTTTGGATATGTGGCTAATATGTGAATTCAGGTATCCCATATAAATTGTTTTTTTGGCTAGCATGTCCTCTCCCAGATACTTGAAGGGGACAAGCTAGATTCTTTTTTTCCCTTTAAATATTGCAACCCACCCATTAGCCCATAATTGTCCTACCCCAAAAGAAGCATAAATTATGAACAAATTAAACAAAAAATTGTAAGTCCCTAGTCCCTATCTATTGCGACGTCAAGCAGACCTTCATCTTTAGAGTGATTGGATTTAGTTCATGGTGGCCTGATTTAAAATCCTATGAGTGAGTGTTACTGGGGGTTGGTGTCGTTGGAAGTTCACTTTAAGATTGGGAGTCTTCTGCGAGCTAGCATTTCTAGATTCCGATTGCTTCTCGTTCCAATTGCCTTTTATCACCTTAGCATAGCTATTTTACTCTTTCTAATATTCAAATTGATTCCGAGATGACCTGTATAAGGTTTCTTTGGAATCGTTTAGTTTAATCAAGATGTGATTGCATTTTATGAATAACTCCAGTTTACAATTAACACTATCTGATTATCATAGCTGTTTGTGCTGCATTCAACTTATGCATCCTGACTGAACCGGATGTCTTCTAATCTAGGAATACTTGTAAACTATAGGCCTTGTCTACGTTGTTAGTTTCATCTTGAAATATGGTAGAGACTAAGCATGAGGAGATGGTCGCATTAATGCTCTTCTCATTCATTTTGTTCGTTTTGTCTCCTACCAGCTATACACAAAGGAAACTTCCAAGAACTGGAAGTTGGCTGGATCAGATGGAAGCAGCCAGCTGATGATGAAGGAACCTTCAGCAAACGTGGTCCTGTTGGATTTCATATCATCTGAAAAATGGCAAGATGTGGTGGACTTCGATGATCACCTTGACGACATTAGCAAGTACAACACACAATCCCCCTTCCCTTTTTCAATCATGAATGAATTTAAAAGTTAAAGCTTTGTTTTAAACTTCAAAATTTTGCAGGGATTGGTTGAATCCAGACCTCTTCAAGTAAAGATCTTTTAGAAGAGATTGGTTGGAAAATGGAGCCTTGTGCTTTTCAATGATTGAGAATATTGTTAGATGCACATTACTATTAGGTAATGGTCAAATTTTATCTCATTGGACTTTGATTAGCTTTCTTTGATTCGAGATACCGAAGTTCTCGGTCTTGAAGAACTTTTGAGTTCAAGGCGAATGTTTATGGAGTTCATTTGGATGATGTACACTAACACAACTTCTCATTCTTTGAATGGGAAAGACAAACACTACCATGCATTGAGGATCAGTTTATTGGTTGAGAATGGCTTTGAAGATTATTCAAAATGAAAATTTTAGGAGAGAAGTACCATTCCTTGTATTGTTTTCCTTAAAAAGAAATTAACTTTTATGTAATTACTTTAAGGATTAATTCTGCTTTTTTAGAATATAGTGTTACAATTAGTCGATTAGCAGTAGAGTGAGAAATTAAGTTTTTTTTTTAAATATATAATTAAT ATGGGCGGCGATCTACGCTTCGAGATCTCTCAAAATGCTTACATCAAACTTGTTCTCCATGCCCTAAAGCACCGGACCACCGCCGTCAATGGAGTCCTTCTAGGTCGCATCTCCGGTCCCAATGACGTCATTGAAATTTCCGATTCCGTCCCTCTCTTCCACTCCAGCATCGGTCTCCTTCCTCAGCTCGAGATATCTCTCCTTCTGATTGAAGAATACTATGCGGCTAAGGGATTGAATATTGTGGGGTACTTTCATGCCAATGAGCGATTTGATGACTATGAGGTCGGCGGTGTAGCCAAGAATATTGGTGATCATATTTCTCGATTTTTTCCACATGCTGCTCTTCTTTTGTTAGATCACAGGAAACTTGAAGCTTTGCCGAAGAGAAAGGATAGAAGCCCTGTAATGGAGCTATACACAAAGGAAACTTCCAAGAACTGGAAGTTGGCTGGATCAGATGGAAGCAGCCAGCTGATGATGAAGGAACCTTCAGCAAACGTGGTCCTGTTGGATTTCATATCATCTGAAAAATGGCAAGATGTGGTGGACTTCGATGATCACCTTGACGACATTAGCAAGGATTGGTTGAATCCAGACCTCTTCAAGTAA ATGGGCGGCGATCTACGCTTCGAGATCTCTCAAAATGCTTACATCAAACTTGTTCTCCATGCCCTAAAGCACCGGACCACCGCCGTCAATGGAGTCCTTCTAGGTCGCATCTCCGGTCCCAATGACGTCATTGAAATTTCCGATTCCGTCCCTCTCTTCCACTCCAGCATCGGTCTCCTTCCTCAGCTCGAGATATCTCTCCTTCTGATTGAAGAATACTATGCGGCTAAGGGATTGAATATTGTGGGGTACTTTCATGCCAATGAGCGATTTGATGACTATGAGGTCGGCGGTGTAGCCAAGAATATTGGTGATCATATTTCTCGATTTTTTCCACATGCTGCTCTTCTTTTGTTAGATCACAGGAAACTTGAAGCTTTGCCGAAGAGAAAGGATAGAAGCCCTGTAATGGAGCTATACACAAAGGAAACTTCCAAGAACTGGAAGTTGGCTGGATCAGATGGAAGCAGCCAGCTGATGATGAAGGAACCTTCAGCAAACGTGGTCCTGTTGGATTTCATATCATCTGAAAAATGGCAAGATGTGGTGGACTTCGATGATCACCTTGACGACATTAGCAAGGATTGGTTGAATCCAGACCTCTTCAAGTAA MGGDLRFEISQNAYIKLVLHALKHRTTAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLLPQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDHRKLEALPKRKDRSPVMELYTKETSKNWKLAGSDGSSQLMMKEPSANVVLLDFISSEKWQDVVDFDDHLDDISKDWLNPDLFK
BLAST of CsaV3_4G029170 vs. NCBI nr
Match: XP_004144311.1 (PREDICTED: ER membrane protein complex subunit 8/9 homolog [Cucumis sativus] >KGN54668.1 hypothetical protein Csa_4G419600 [Cucumis sativus]) HSP 1 Score: 408.7 bits (1049), Expect = 1.2e-110 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. NCBI nr
Match: XP_008455761.1 (PREDICTED: ER membrane protein complex subunit 8/9 homolog [Cucumis melo]) HSP 1 Score: 404.1 bits (1037), Expect = 2.9e-109 Identity = 200/203 (98.52%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. NCBI nr
Match: XP_022950917.1 (ER membrane protein complex subunit 8/9 homolog [Cucurbita moschata]) HSP 1 Score: 390.6 bits (1002), Expect = 3.3e-105 Identity = 191/203 (94.09%), Postives = 199/203 (98.03%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. NCBI nr
Match: XP_023543492.1 (ER membrane protein complex subunit 8/9 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 387.9 bits (995), Expect = 2.2e-104 Identity = 189/203 (93.10%), Postives = 199/203 (98.03%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. NCBI nr
Match: XP_022966460.1 (ER membrane protein complex subunit 8/9 homolog [Cucurbita maxima]) HSP 1 Score: 385.2 bits (988), Expect = 1.4e-103 Identity = 191/203 (94.09%), Postives = 198/203 (97.54%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TAIR10
Match: AT5G55940.1 (Uncharacterised protein family (UPF0172)) HSP 1 Score: 302.4 bits (773), Expect = 2.2e-82 Identity = 144/201 (71.64%), Postives = 179/201 (89.05%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TAIR10
Match: AT5G51620.2 (Uncharacterised protein family (UPF0172)) HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. Swiss-Prot
Match: sp|Q9FG71|EMC89_ARATH (ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana OX=3702 GN=EMB2731 PE=2 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 3.9e-81 Identity = 144/201 (71.64%), Postives = 179/201 (89.05%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. Swiss-Prot
Match: sp|Q9DB76|EMC9_MOUSE (ER membrane protein complex subunit 9 OS=Mus musculus OX=10090 GN=Emc9 PE=1 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 5.2e-25 Identity = 69/194 (35.57%), Postives = 105/194 (54.12%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. Swiss-Prot
Match: sp|Q5U1W7|EMC9_RAT (ER membrane protein complex subunit 9 OS=Rattus norvegicus OX=10116 GN=Emc9 PE=2 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 7.4e-24 Identity = 67/194 (34.54%), Postives = 104/194 (53.61%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. Swiss-Prot
Match: sp|Q9Y3B6|EMC9_HUMAN (ER membrane protein complex subunit 9 OS=Homo sapiens OX=9606 GN=EMC9 PE=1 SV=3) HSP 1 Score: 110.2 bits (274), Expect = 2.8e-23 Identity = 66/194 (34.02%), Postives = 103/194 (53.09%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. Swiss-Prot
Match: sp|Q5FVL2|EMC8_RAT (ER membrane protein complex subunit 8 OS=Rattus norvegicus OX=10116 GN=Emc8 PE=2 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22 Identity = 64/205 (31.22%), Postives = 103/205 (50.24%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TrEMBL
Match: tr|A0A0A0KYR9|A0A0A0KYR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419600 PE=4 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 7.8e-111 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TrEMBL
Match: tr|A0A1S3C2C1|A0A1S3C2C1_CUCME (ER membrane protein complex subunit 8/9 homolog OS=Cucumis melo OX=3656 GN=LOC103495860 PE=4 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 1.9e-109 Identity = 200/203 (98.52%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TrEMBL
Match: tr|A0A2P5ELD8|A0A2P5ELD8_9ROSA (ER membrane protein complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_178980 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 4.0e-91 Identity = 165/203 (81.28%), Postives = 186/203 (91.63%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TrEMBL
Match: tr|A0A2P4HGN1|A0A2P4HGN1_QUESU (Er membrane protein complex subunit 8/9 like OS=Quercus suber OX=58331 GN=CFP56_61558 PE=4 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 5.2e-91 Identity = 161/203 (79.31%), Postives = 190/203 (93.60%), Query Frame = 0
BLAST of CsaV3_4G029170 vs. TrEMBL
Match: tr|A0A2P4L507|A0A2P4L507_QUESU (Er membrane protein complex subunit 8/9 like OS=Quercus suber OX=58331 GN=CFP56_77265 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 2.0e-90 Identity = 160/203 (78.82%), Postives = 190/203 (93.60%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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