CsaV3_4G027770.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027770.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 17126683 .. 17128220 (+)
Sequence length366
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGAAAATAAATTATTAACGTCCTATTGGAAAACCATGTACAGTCACAGTCTTGGGATCCCGTAGGAGGATACACATTTTAGTCTAACGTCCTTATTTCAGTCTAGTGTTCTGCAGAAACACTTATCAGTCTAATGCTCCCGAATGATGCATAAAAATTGGTGATCCCGTAGGACACCTACAAGGCACACATATCTCAATAAAACTAACAATTTTCCCCTCAGTCCATTCTAAACCTTAATTAATCAATCAATTTGCAAATTCAAAATAATTCGACACCTTTACAGTCAATTTATGCAATCCAACACCTACTCAACATTGTTGTAACAATTCCTCAACAAAAAAACTTATACACAAGTAACCCTCTTCTTAATTCAGTTAATTTAATTTAGTTCTTTAACCACATGACAGTTCAGTCATCACAACCAACCAAGCATATGTACCTGTCAATCCATCTCAATCCACACAGCCAAACAAATCAAATAAGATTTGCATATCAGCCAGACAGTCAAAATAAGATTTGCATATCAGTCCATTAGACAATACATCTCAATTTCGCCGTTGAGTCCAATAGTAGGAACCCTTACCTCAAAGTTAGGGAAGCTCCCTAATCAATTAAGGTCCACGAAACAATCCTAAGCACAATATTGCAAAATTCGATTACTCTCACAATACATATCTCATTTACTTTCCTCAAAGTAGATTTTTTGCTTACTAAATGTGGCTAACCGAAATCAAAATTCACAAATTTGTTTTAGTGGCTAACCGAAATCAAAATTCACAAATTTGTTGTGAATTCATGTGACCCAAGGCTACTTCCAACACCTTCCAGAATCTATCATTTGAACCAATTAACCATTAAAATTCATAAAAAATTTACAATACAAAACCATCAATCCTACAATTTTCATTCTTACCACAACTACCAGAGTATGGCAGAAACTACAACGATTAAAGGAATGAGATCTGCACGTATAAACCGGATTGGGGAACCGGCAACAGCTATTTCACAGCCGGCGGACGAGGAAGTGGCACGGCACACAACGACATGCAGTTGTCGGATTGTGAACGGGGACAGGCGCAATCAAAACGCAATCCGGATTCAACGAACGACCTGCAACTTGCAACAGATGATTCACGACGAAGGGATGGCGTGCAGCAGAGAGATGGCGTACGGTGATTCGCAGCTCGGCTGTGCAACCCGAACGGAAGAACGATGCAGCGGCGACAGAACGAAAAGAAAAGATCAGACACTGGCGGAATCTTGGATTTTGGATGGCACGGCGTCGCAGATCTGAACGACGACTGCAAGGTGACGCGTACGGCTTGCTTCGCGAATGGAGACAGAGATGGCGGCCGACGGTTGCAGACGTAGCAGATGAAGACGCGCTGCGGCTGGGTAGGGTAAAAAAGAAAGAGAAACGGAAGAAGAGGAGATTGGGGTTGAGGTGGCCGGCGGCTGCAAACTGAAGGAAGAAAGAAGAGAAAAAAAACGGAAAAGAAAAGAGAAAAGAAGAAGAAAAAGATTTTTCTTTTTC

mRNA sequence

ATGGCAGAAACTACAACGATTAAAGGAATGAGATCTGCACGTATAAACCGGATTGGGGAACCGGCAACAGCTATTTCACAGCCGGCGGACGAGGAAGTGGCACGGCACACAACGACATGCAGTTGTCGGATTGTGAACGGGGACAGGCGCAATCAAAACGCAATCCGGATTCAACGAACGACCTGCAACTTGCAACAGATGATTCACGACGAAGGGATGGCGTGCAGCAGAGAGATGGCGTACGGTGATTCGCAGCTCGGCTGTGCAACCCGAACGGAAGAACGATGCAGCGGCGACAGAACGAAAAGAAAAGATCAGACACTGGCGGAATCTTGGATTTTGGATGGCACGGCGTCGCAGATCTGA

Coding sequence (CDS)

ATGGCAGAAACTACAACGATTAAAGGAATGAGATCTGCACGTATAAACCGGATTGGGGAACCGGCAACAGCTATTTCACAGCCGGCGGACGAGGAAGTGGCACGGCACACAACGACATGCAGTTGTCGGATTGTGAACGGGGACAGGCGCAATCAAAACGCAATCCGGATTCAACGAACGACCTGCAACTTGCAACAGATGATTCACGACGAAGGGATGGCGTGCAGCAGAGAGATGGCGTACGGTGATTCGCAGCTCGGCTGTGCAACCCGAACGGAAGAACGATGCAGCGGCGACAGAACGAAAAGAAAAGATCAGACACTGGCGGAATCTTGGATTTTGGATGGCACGGCGTCGCAGATCTGA

Protein sequence

MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRTTCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQI
Homology
[Close]
BLAST of CsaV3_4G027770.1 vs. NCBI nr
Match: KGN54514.1 (hypothetical protein Csa_4G344590 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60
           MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT
Sbjct: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60

Query: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120
           TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ
Sbjct: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120

Query: 121 I 122
           I
Sbjct: 121 I 121

[Close]
BLAST of CsaV3_4G027770.1 vs. TrEMBL
Match: tr|A0A0A0L0G4|A0A0A0L0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G344590 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60
           MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT
Sbjct: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60

Query: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120
           TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ
Sbjct: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120

Query: 121 I 122
           I
Sbjct: 121 I 121

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54514.11.8e-61100.00hypothetical protein Csa_4G344590 [Cucumis sativus][more]
BLAST of CsaV3_4G027770.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027770.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027770.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0G4|A0A0A0L0G4_CUCSA1.2e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G344590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G027770CsaV3_4G027770gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G027770.1.exon1CsaV3_4G027770.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G027770.1.cds1CsaV3_4G027770.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G027770.1CsaV3_4G027770.1-proteinpolypeptide