CsaV3_4G027770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 17126683 .. 17128220 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGAAAATAAATTATTAACGTCCTATTGGAAAACCATGTACAGTCACAGTCTTGGGATCCCGTAGGAGGATACACATTTTAGTCTAACGTCCTTATTTCAGTCTAGTGTTCTGCAGAAACACTTATCAGTCTAATGCTCCCGAATGATGCATAAAAATTGGTGATCCCGTAGGACACCTACAAGGCACACATATCTCAATAAAACTAACAATTTTCCCCTCAGTCCATTCTAAACCTTAATTAATCAATCAATTTGCAAATTCAAAATAATTCGACACCTTTACAGTCAATTTATGCAATCCAACACCTACTCAACATTGTTGTAACAATTCCTCAACAAAAAAACTTATACACAAGTAACCCTCTTCTTAATTCAGTTAATTTAATTTAGTTCTTTAACCACATGACAGTTCAGTCATCACAACCAACCAAGCATATGTACCTGTCAATCCATCTCAATCCACACAGCCAAACAAATCAAATAAGATTTGCATATCAGCCAGACAGTCAAAATAAGATTTGCATATCAGTCCATTAGACAATACATCTCAATTTCGCCGTTGAGTCCAATAGTAGGAACCCTTACCTCAAAGTTAGGGAAGCTCCCTAATCAATTAAGGTCCACGAAACAATCCTAAGCACAATATTGCAAAATTCGATTACTCTCACAATACATATCTCATTTACTTTCCTCAAAGTAGATTTTTTGCTTACTAAATGTGGCTAACCGAAATCAAAATTCACAAATTTGTTTTAGTGGCTAACCGAAATCAAAATTCACAAATTTGTTGTGAATTCATGTGACCCAAGGCTACTTCCAACACCTTCCAGAATCTATCATTTGAACCAATTAACCATTAAAATTCATAAAAAATTTACAATACAAAACCATCAATCCTACAATTTTCATTCTTACCACAACTACCAGAGTATGGCAGAAACTACAACGATTAAAGGAATGAGATCTGCACGTATAAACCGGATTGGGGAACCGGCAACAGCTATTTCACAGCCGGCGGACGAGGAAGTGGCACGGCACACAACGACATGCAGTTGTCGGATTGTGAACGGGGACAGGCGCAATCAAAACGCAATCCGGATTCAACGAACGACCTGCAACTTGCAACAGATGATTCACGACGAAGGGATGGCGTGCAGCAGAGAGATGGCGTACGGTGATTCGCAGCTCGGCTGTGCAACCCGAACGGAAGAACGATGCAGCGGCGACAGAACGAAAAGAAAAGATCAGACACTGGCGGAATCTTGGATTTTGGATGGCACGGCGTCGCAGATCTGAACGACGACTGCAAGGTGACGCGTACGGCTTGCTTCGCGAATGGAGACAGAGATGGCGGCCGACGGTTGCAGACGTAGCAGATGAAGACGCGCTGCGGCTGGGTAGGGTAAAAAAGAAAGAGAAACGGAAGAAGAGGAGATTGGGGTTGAGGTGGCCGGCGGCTGCAAACTGAAGGAAGAAAGAAGAGAAAAAAAACGGAAAAGAAAAGAGAAAAGAAGAAGAAAAAGATTTTTCTTTTTC

mRNA sequence

ATGGCAGAAACTACAACGATTAAAGGAATGAGATCTGCACGTATAAACCGGATTGGGGAACCGGCAACAGCTATTTCACAGCCGGCGGACGAGGAAGTGGCACGGCACACAACGACATGCAGTTGTCGGATTGTGAACGGGGACAGGCGCAATCAAAACGCAATCCGGATTCAACGAACGACCTGCAACTTGCAACAGATGATTCACGACGAAGGGATGGCGTGCAGCAGAGAGATGGCGTACGGTGATTCGCAGCTCGGCTGTGCAACCCGAACGGAAGAACGATGCAGCGGCGACAGAACGAAAAGAAAAGATCAGACACTGGCGGAATCTTGGATTTTGGATGGCACGGCGTCGCAGATCTGA

Coding sequence (CDS)

ATGGCAGAAACTACAACGATTAAAGGAATGAGATCTGCACGTATAAACCGGATTGGGGAACCGGCAACAGCTATTTCACAGCCGGCGGACGAGGAAGTGGCACGGCACACAACGACATGCAGTTGTCGGATTGTGAACGGGGACAGGCGCAATCAAAACGCAATCCGGATTCAACGAACGACCTGCAACTTGCAACAGATGATTCACGACGAAGGGATGGCGTGCAGCAGAGAGATGGCGTACGGTGATTCGCAGCTCGGCTGTGCAACCCGAACGGAAGAACGATGCAGCGGCGACAGAACGAAAAGAAAAGATCAGACACTGGCGGAATCTTGGATTTTGGATGGCACGGCGTCGCAGATCTGA

Protein sequence

MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRTTCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQI
Homology
[Close]
BLAST of CsaV3_4G027770 vs. NCBI nr
Match: KGN54514.1 (hypothetical protein Csa_4G344590 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60
           MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT
Sbjct: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60

Query: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120
           TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ
Sbjct: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120

Query: 121 I 122
           I
Sbjct: 121 I 121

[Close]
BLAST of CsaV3_4G027770 vs. TrEMBL
Match: tr|A0A0A0L0G4|A0A0A0L0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G344590 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60
           MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT
Sbjct: 1   MAETTTIKGMRSARINRIGEPATAISQPADEEVARHTTTCSCRIVNGDRRNQNAIRIQRT 60

Query: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120
           TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ
Sbjct: 61  TCNLQQMIHDEGMACSREMAYGDSQLGCATRTEERCSGDRTKRKDQTLAESWILDGTASQ 120

Query: 121 I 122
           I
Sbjct: 121 I 121

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54514.11.8e-61100.00hypothetical protein Csa_4G344590 [Cucumis sativus][more]
BLAST of CsaV3_4G027770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0G4|A0A0A0L0G4_CUCSA1.2e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G344590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027770.1CsaV3_4G027770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G027770Silver-seed gourdcarcucB0511
CsaV3_4G027770Silver-seed gourdcarcucB0512
CsaV3_4G027770Silver-seed gourdcarcucB0562
CsaV3_4G027770Cucumber (Gy14) v2cgybcucB171
CsaV3_4G027770Cucumber (Gy14) v1cgycucB405
CsaV3_4G027770Cucurbita maxima (Rimu)cmacucB0803
CsaV3_4G027770Cucurbita maxima (Rimu)cmacucB1019
CsaV3_4G027770Cucurbita maxima (Rimu)cmacucB1027
CsaV3_4G027770Cucurbita moschata (Rifu)cmocucB0788
CsaV3_4G027770Cucurbita moschata (Rifu)cmocucB1002
CsaV3_4G027770Cucurbita moschata (Rifu)cmocucB1011
CsaV3_4G027770Cucurbita pepo (Zucchini)cpecucB0082
CsaV3_4G027770Cucurbita pepo (Zucchini)cpecucB0606
CsaV3_4G027770Cucurbita pepo (Zucchini)cpecucB0615
CsaV3_4G027770Wild cucumber (PI 183967)cpicucB212
CsaV3_4G027770Bottle gourd (USVL1VR-Ls)cuclsiB277
CsaV3_4G027770Melon (DHL92) v3.5.1cucmeB340
CsaV3_4G027770Melon (DHL92) v3.6.1cucmedB334
CsaV3_4G027770Watermelon (Charleston Gray)cucwcgB312
CsaV3_4G027770Watermelon (97103) v1cucwmB360
CsaV3_4G027770Watermelon (97103) v1cucwmB361
CsaV3_4G027770Watermelon (97103) v2cucwmbB300
CsaV3_4G027770Wax gourdcucwgoB400