CsaV3_4G026490 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G026490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptioncyclin-dependent kinase 11B-like
Locationchr4 : 15758434 .. 15759922 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCGAATGCTGATTCGTCTAGTAAATCCCCGATCCGACAACATTTAAAAAAATACGTGTAACCTGAAAAGAGCTTCCTTTTTTCTAATCGTCACTAGGAATCAGACGCTCGTCCATTCCTCTGCTTATACATACAGCACAAGAAACTCCTATTAATTCCAATTCCAATTCCAAACCCTAAATTGAAAGACTAGATCTCACAACAATGGAAGAAGATGGCGTTGCGGATGAGCATTCTCACAACTTCATCCAACAACGAGGACAAGAGCAAGAACACCAAAAGTCAAGTGGGTTTTTGAAGAATTTCATTTCCAACATGGCGTCCTCAGAGGGAACTGACGAGAAGAAAACGGATCATGAATATCAAGAAAATGGAGAAAAGTCAAGCGGGTTTCTGAAGAATTTCATGTCGAACATGGTCTCTGCAGAGGAAAATGAAGGGAAAACAGACCAAGAAAAGGAGGAAGAAGAAGAAGGAAAGACAAATGGGTTTCTGAAGAATTTCATCTCAAATATTGTTTCTGGAGAGGAAACTGAAGAAAAAGCGGAGGAGGAAGAAGAAGAAGGAAAGGAAAATGGGTTTCTGAAGACTTTCATGTCGAACAAAGTAAATGAAGGGGAGAGAGAAGAGAAAACAGAGGTAGAAGAAGAAAAGGGAGGGGGTTTTTTGAGGAATTTCATTTCAAACATGGTGTCTTCAGAAGGAAATGAAGATGATGATGGTAAGATGGCAAGCAATGACATGGTTTCTCAAAAAACAGGTGAAGAAGAAAGAGACAAAAGCAGCGGTTATAAGTCGGTTGAAGAAAAGGGCGGCGACAACGGCAGTGGCGGTGGAGGTGGAGGTGGAGGCATTATAGACAACATTGTCTCACATTTACCTGCTTCACTTCAAGGTGAGTATTATCATAAAACAAGAAAATTTTGAATTAATTTAATTTGAGAGATAAAACAGGGTAATGAGATTGAAATTGTTGAAACAGGTGATGCAGTGACAACATCAGATGAAGCAGCAATTCTGATCCACTCAATTATCCACGAATGAAAGTTTCTTGGGTTTTGATTTTGTTTTGTGTTCATAGGTTTTGTTTTGTTTTTTTTTCTATGTAAATTTAAGTTTGATGTGTTTTTGATTGATTGGGACGTGTACTCTTTATTTTTTGTAAAACAGAGTACATAAGAAACAATGGGTTGTAGGGGTAAGAGAAAGAAGATGCAGAAAATCAGGAAATTTGACTATGAAAATGTAGTTTAATCTTTATTTATTAACAATGGATTTGGTGTTTTGTTGGATGGAACGCTTCTATAGAAAGAAAGGGATTTAAAATATCAGTTGAAAGTTCTATTAGTTATGTAAACTAAATTTTAGAGAATAAATTCCAACTTTCTAATGAATAAGACTAAAGTTGTAGAATTTATGGTGCGAGTGGAAGCATTCTTGACGACTTGATAGTCTATAAAACAAATCAAGTTATTAAATACATAAGGTC

mRNA sequence

ATGGAAGAAGATGGCGTTGCGGATGAGCATTCTCACAACTTCATCCAACAACGAGGACAAGAGCAAGAACACCAAAAGTCAAGTGGGTTTTTGAAGAATTTCATTTCCAACATGGCGTCCTCAGAGGGAACTGACGAGAAGAAAACGGATCATGAATATCAAGAAAATGGAGAAAAGTCAAGCGGGTTTCTGAAGAATTTCATGTCGAACATGGTCTCTGCAGAGGAAAATGAAGGGAAAACAGACCAAGAAAAGGAGGAAGAAGAAGAAGGAAAGACAAATGGGTTTCTGAAGAATTTCATCTCAAATATTGTTTCTGGAGAGGAAACTGAAGAAAAAGCGGAGGAGGAAGAAGAAGAAGGAAAGGAAAATGGGTTTCTGAAGACTTTCATGTCGAACAAAGTAAATGAAGGGGAGAGAGAAGAGAAAACAGAGGTAGAAGAAGAAAAGGGAGGGGGTTTTTTGAGGAATTTCATTTCAAACATGGTGTCTTCAGAAGGAAATGAAGATGATGATGGTAAGATGGCAAGCAATGACATGGTTTCTCAAAAAACAGGTGAAGAAGAAAGAGACAAAAGCAGCGGTTATAAGTCGGTTGAAGAAAAGGGCGGCGACAACGGCAGTGGCGGTGGAGGTGGAGGTGGAGGCATTATAGACAACATTGTCTCACATTTACCTGCTTCACTTCAAGGTGATGCAGTGACAACATCAGATGAAGCAGCAATTCTGATCCACTCAATTATCCACGAATGA

Coding sequence (CDS)

ATGGAAGAAGATGGCGTTGCGGATGAGCATTCTCACAACTTCATCCAACAACGAGGACAAGAGCAAGAACACCAAAAGTCAAGTGGGTTTTTGAAGAATTTCATTTCCAACATGGCGTCCTCAGAGGGAACTGACGAGAAGAAAACGGATCATGAATATCAAGAAAATGGAGAAAAGTCAAGCGGGTTTCTGAAGAATTTCATGTCGAACATGGTCTCTGCAGAGGAAAATGAAGGGAAAACAGACCAAGAAAAGGAGGAAGAAGAAGAAGGAAAGACAAATGGGTTTCTGAAGAATTTCATCTCAAATATTGTTTCTGGAGAGGAAACTGAAGAAAAAGCGGAGGAGGAAGAAGAAGAAGGAAAGGAAAATGGGTTTCTGAAGACTTTCATGTCGAACAAAGTAAATGAAGGGGAGAGAGAAGAGAAAACAGAGGTAGAAGAAGAAAAGGGAGGGGGTTTTTTGAGGAATTTCATTTCAAACATGGTGTCTTCAGAAGGAAATGAAGATGATGATGGTAAGATGGCAAGCAATGACATGGTTTCTCAAAAAACAGGTGAAGAAGAAAGAGACAAAAGCAGCGGTTATAAGTCGGTTGAAGAAAAGGGCGGCGACAACGGCAGTGGCGGTGGAGGTGGAGGTGGAGGCATTATAGACAACATTGTCTCACATTTACCTGCTTCACTTCAAGGTGATGCAGTGACAACATCAGATGAAGCAGCAATTCTGATCCACTCAATTATCCACGAATGA

Protein sequence

MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYQENGEKSSGFLKNFMSNMVSAEENEGKTDQEKEEEEEGKTNGFLKNFISNIVSGEETEEKAEEEEEEGKENGFLKTFMSNKVNEGEREEKTEVEEEKGGGFLRNFISNMVSSEGNEDDDGKMASNDMVSQKTGEEERDKSSGYKSVEEKGGDNGSGGGGGGGGIIDNIVSHLPASLQGDAVTTSDEAAILIHSIIHE
BLAST of CsaV3_4G026490 vs. NCBI nr
Match: XP_004148627.1 (PREDICTED: major centromere autoantigen B [Cucumis sativus] >KGN54402.1 hypothetical protein Csa_4G312840 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.0e-32
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0

Query: 1   MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXX 60
           MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXX
Sbjct: 1   MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEA 240

Query: 241 AILIHSIIHE 251
           AILIHSIIHE
Sbjct: 241 AILIHSIIHE 250

BLAST of CsaV3_4G026490 vs. NCBI nr
Match: XP_008464224.1 (PREDICTED: cyclin-dependent kinase 11B-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-14
Identity = 178/248 (71.77%), Postives = 184/248 (74.19%), Query Frame = 0

Query: 3   EDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXXXX 62
           EDG+ADE   NF+QQRGQ +EH+KSSGF KNFISNMAS E +DEKKT             
Sbjct: 2   EDGIADERPQNFVQQRGQVEEHEKSSGFFKNFISNMASPEESDEKKT------------- 61

Query: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  --------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXXXX 182
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNF     SSEGNE             
Sbjct: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFXXXXXSSEGNE--DDDGKIASNDM 181

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEAAI 242
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NIVSHLPASLQGDAVTT+DEAAI
Sbjct: 182 VSQKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIVSHLPASLQGDAVTTTDEAAI 214

Query: 243 LIHSIIHE 251
           LIHSIIHE
Sbjct: 242 LIHSIIHE 214

BLAST of CsaV3_4G026490 vs. NCBI nr
Match: XP_022978294.1 (cilia- and flagella-associated protein 251 isoform X1 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 219 DNIVSHLPASLQGDAVTTSDEAAILIHSIIHE 251
           DNIVSHLPASLQGDAVTT+DEAAILIHSIIHE
Sbjct: 161 DNIVSHLPASLQGDAVTTTDEAAILIHSIIHE 192

BLAST of CsaV3_4G026490 vs. NCBI nr
Match: XP_022978295.1 (cyclin-dependent kinase 11A isoform X2 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 219 DNIVSHLPASLQGDAVTTSDEAAILIHSIIHE 251
           DNIVSHLPASLQGDAVTT+DEAAILIHSIIHE
Sbjct: 139 DNIVSHLPASLQGDAVTTTDEAAILIHSIIHE 170

BLAST of CsaV3_4G026490 vs. NCBI nr
Match: XP_022966565.1 (VID27-like protein [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 219 DNIVSHLPASLQGDAVTTSDEAAILIHSIIHE 251
           DNIVSHLPASLQGDAVTT+DEAAILIHSIIHE
Sbjct: 141 DNIVSHLPASLQGDAVTTTDEAAILIHSIIHE 172

BLAST of CsaV3_4G026490 vs. TrEMBL
Match: tr|A0A0A0L1D7|A0A0A0L1D7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312840 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0

Query: 1   MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXX 60
           MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXX
Sbjct: 1   MEEDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEA 240

Query: 241 AILIHSIIHE 251
           AILIHSIIHE
Sbjct: 241 AILIHSIIHE 250

BLAST of CsaV3_4G026490 vs. TrEMBL
Match: tr|A0A1S3CMH8|A0A1S3CMH8_CUCME (cyclin-dependent kinase 11B-like OS=Cucumis melo OX=3656 GN=LOC103502155 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.7e-14
Identity = 178/248 (71.77%), Postives = 184/248 (74.19%), Query Frame = 0

Query: 3   EDGVADEHSHNFIQQRGQEQEHQKSSGFLKNFISNMASSEGTDEKKTDHEYXXXXXXXXX 62
           EDG+ADE   NF+QQRGQ +EH+KSSGF KNFISNMAS E +DEKKT             
Sbjct: 2   EDGIADERPQNFVQQRGQVEEHEKSSGFFKNFISNMASPEESDEKKT------------- 61

Query: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  --------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFISNMVSSEGNEXXXXXXXXXXXXX 182
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNF     SSEGNE             
Sbjct: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFLRNFXXXXXSSEGNE--DDDGKIASNDM 181

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNIVSHLPASLQGDAVTTSDEAAI 242
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NIVSHLPASLQGDAVTT+DEAAI
Sbjct: 182 VSQKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIVSHLPASLQGDAVTTTDEAAI 214

Query: 243 LIHSIIHE 251
           LIHSIIHE
Sbjct: 242 LIHSIIHE 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004148627.16.0e-32100.00PREDICTED: major centromere autoantigen B [Cucumis sativus] >KGN54402.1 hypothet... [more]
XP_008464224.15.7e-1471.77PREDICTED: cyclin-dependent kinase 11B-like [Cucumis melo][more]
XP_022978294.16.7e-0796.88cilia- and flagella-associated protein 251 isoform X1 [Cucurbita maxima][more]
XP_022978295.16.7e-0796.88cyclin-dependent kinase 11A isoform X2 [Cucurbita maxima][more]
XP_022966565.16.7e-0796.88VID27-like protein [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L1D7|A0A0A0L1D7_CUCSA4.0e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312840 PE=4 SV=1[more]
tr|A0A1S3CMH8|A0A1S3CMH8_CUCME3.7e-1471.77cyclin-dependent kinase 11B-like OS=Cucumis melo OX=3656 GN=LOC103502155 PE=4 SV... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016310 phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016301 kinase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G026490.1CsaV3_4G026490.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..58

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G026490Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G026490Cucumber (Chinese Long) v3cuccucB179
CsaV3_4G026490Silver-seed gourdcarcucB0183
CsaV3_4G026490Silver-seed gourdcarcucB0618
CsaV3_4G026490Silver-seed gourdcarcucB1042
CsaV3_4G026490Cucumber (Gy14) v2cgybcucB128
CsaV3_4G026490Cucumber (Gy14) v2cgybcucB283
CsaV3_4G026490Cucumber (Gy14) v1cgycucB200
CsaV3_4G026490Cucumber (Gy14) v1cgycucB282
CsaV3_4G026490Cucurbita maxima (Rimu)cmacucB0301
CsaV3_4G026490Cucurbita maxima (Rimu)cmacucB0339
CsaV3_4G026490Cucurbita maxima (Rimu)cmacucB0851
CsaV3_4G026490Cucurbita maxima (Rimu)cmacucB0988
CsaV3_4G026490Cucurbita maxima (Rimu)cmacucB1016
CsaV3_4G026490Cucurbita moschata (Rifu)cmocucB0294
CsaV3_4G026490Cucurbita moschata (Rifu)cmocucB0334
CsaV3_4G026490Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G026490Cucurbita moschata (Rifu)cmocucB0838
CsaV3_4G026490Cucurbita moschata (Rifu)cmocucB0972
CsaV3_4G026490Cucurbita moschata (Rifu)cmocucB0999
CsaV3_4G026490Cucurbita pepo (Zucchini)cpecucB0208
CsaV3_4G026490Cucurbita pepo (Zucchini)cpecucB0509
CsaV3_4G026490Cucurbita pepo (Zucchini)cpecucB0771
CsaV3_4G026490Cucurbita pepo (Zucchini)cpecucB1066
CsaV3_4G026490Wild cucumber (PI 183967)cpicucB159
CsaV3_4G026490Wild cucumber (PI 183967)cpicucB348
CsaV3_4G026490Bottle gourd (USVL1VR-Ls)cuclsiB298
CsaV3_4G026490Bottle gourd (USVL1VR-Ls)cuclsiB303
CsaV3_4G026490Melon (DHL92) v3.5.1cucmeB289
CsaV3_4G026490Melon (DHL92) v3.5.1cucmeB292
CsaV3_4G026490Melon (DHL92) v3.6.1cucmedB282
CsaV3_4G026490Melon (DHL92) v3.6.1cucmedB284
CsaV3_4G026490Watermelon (Charleston Gray)cucwcgB281
CsaV3_4G026490Watermelon (Charleston Gray)cucwcgB293
CsaV3_4G026490Watermelon (97103) v1cucwmB301
CsaV3_4G026490Watermelon (97103) v1cucwmB369
CsaV3_4G026490Watermelon (97103) v2cucwmbB275
CsaV3_4G026490Watermelon (97103) v2cucwmbB287
CsaV3_4G026490Wax gourdcucwgoB366