CsaV3_4G009270 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G009270
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 6871156 .. 6871336 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCAGAAGGAGAAACGGAGTTGCATTCTTCAGATGTGGAAGTTGAAAATGTAATGAAGAAAAAAGGAGAAGGAATGGCGGGGAGAGGACACCTTTTTATATGCCCAAAAAGCTTAATTAAATTCGTTGGAAACTTGCTTTCTTGTGACTTAGAACAAGAAAGCATTGTCACAT

mRNA sequence

ATGGCGAAATCAGAAGGAGAAACGGAGTTGCATTCTTCAGATGTGGAAGTTGAAAATGTAATGAAGAAAAAAGGAGAAGGAATGGCGGGGAGAGGACACCTTTTTATATGCCCAAAAAGCTTAATTAAATTCGTTGGAAACTTGCTTTCTTGTGACTTAGAACAAGAAAGCATTGTCACAT

Coding sequence (CDS)

ATGGCGAAATCAGAAGGAGAAACGGAGTTGCATTCTTCAGATGTGGAAGTTGAAAATGTAATGAAGAAAAAAGGAGAAGGAATGGCGGGGAGAGGACACCTTTTTATATGCCCAAAAAGCTTAATTAAATTCGTTGGAAACTTGCTTTCTTGTGACTTAGAACAAGAAAGCATTGTCACAT

Protein sequence

MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVTX

Homology

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BLAST of CsaV3_4G009270 vs. NCBI nr
Match: KGN53690.1 (hypothetical protein Csa_4G105850 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 5.0e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60
          MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT
Sbjct: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60

[Close]

BLAST of CsaV3_4G009270 vs. TrEMBL
Match: tr|A0A0A0KVP8|A0A0A0KVP8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G105850 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60
          MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT
Sbjct: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60

The following BLAST results are available for this feature:

BLAST of CsaV3_4G009270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53690.1	5.0e-25	100.00	hypothetical protein Csa_4G105850 [Cucumis sativus]	[more]

BLAST of CsaV3_4G009270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVP8\|A0A0A0KVP8_CUCSA	3.3e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G105850 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G009270.1	CsaV3_4G009270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G009270	CSPI04G09110	Wild cucumber (PI 183967)	cpicucB213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G009270	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G009270	Cucumber (Gy14) v1	cgycucB604
CsaV3_4G009270	Melon (DHL92) v3.5.1	cucmeB304
CsaV3_4G009270	Melon (DHL92) v3.5.1	cucmeB320
CsaV3_4G009270	Melon (DHL92) v3.6.1	cucmedB296
CsaV3_4G009270	Melon (DHL92) v3.6.1	cucmedB313