CSPI04G09110 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G09110
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 6901885 .. 6902332 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTAAGGACGAGATACATAATTTATGCCTAACTGTTCACTGGCACTGGTACGAATGATATTACTGAAATCGCAAAAGAAAACAACTGAATGCGAACAATTGAATCCCCGATTATAATAAATTCAACAAACGAAATAGAAACGATCTTGGGAGTGGAGAAGTGAGTAATCTGATGATAATGAAGGGTGATTGGAAGGTGTAGAAGTAAAAAGGGAAGACAGAACAAGTATAAGAAGATTGAAAACCTGAATTGAATGGCGAAATCAGAAGGAGAAACGGAGTTGCATTCTTCAGATGTGGAAGTTGAAAATGTAATGAAGAAAAAAGGAGAAGGAATGGCGGGGAGAGGACACCTTTTTATATGCCCAAAAAGCTTAATTAAATTCGTTGGAAACTTGCTTTCTTGTGACTTAGAACAAGAAAGCATTGTCACATGTAAGTTTTAA

mRNA sequence

ATGGCGAAATCAGAAGGAGAAACGGAGTTGCATTCTTCAGATGTGGAAGTTGAAAATGTAATGAAGAAAAAAGGAGAAGGAATGGCGGGGAGAGGACACCTTTTTATATGCCCAAAAAGCTTAATTAAATTCGTTGGAAACTTGCTTTCTTGTGACTTAGAACAAGAAAGCATTGTCACATGTAAGTTTTAA

Coding sequence (CDS)

ATGGCGAAATCAGAAGGAGAAACGGAGTTGCATTCTTCAGATGTGGAAGTTGAAAATGTAATGAAGAAAAAAGGAGAAGGAATGGCGGGGAGAGGACACCTTTTTATATGCCCAAAAAGCTTAATTAAATTCGTTGGAAACTTGCTTTCTTGTGACTTAGAACAAGAAAGCATTGTCACATGTAAGTTTTAA
Homology
[Close]
BLAST of CSPI04G09110 vs. TrEMBL
Match: A0A0A0KVP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G105850 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.3e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60
          MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT
Sbjct: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60

Query: 61 CKF 64
          CKF
Sbjct: 61 CKF 63

[Close]
BLAST of CSPI04G09110 vs. NCBI nr
Match: gi|700198532|gb|KGN53690.1| (hypothetical protein Csa_4G105850 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60
          MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT
Sbjct: 1  MAKSEGETELHSSDVEVENVMKKKGEGMAGRGHLFICPKSLIKFVGNLLSCDLEQESIVT 60

Query: 61 CKF 64
          CKF
Sbjct: 61 CKF 63

The following BLAST results are available for this feature:
BLAST of CSPI04G09110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G09110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVP8_CUCSA5.3e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G105850 PE=4 SV=1[more]
BLAST of CSPI04G09110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G09110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198532|gb|KGN53690.1|7.6e-28100.00hypothetical protein Csa_4G105850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G09110.1CSPI04G09110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G09110CsaV3_4G009270Cucumber (Chinese Long) v3cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G09110Cucumber (Chinese Long) v2cpicuB182
CSPI04G09110Melon (DHL92) v3.5.1cpimeB298
CSPI04G09110Melon (DHL92) v3.5.1cpimeB315
CSPI04G09110Melon (DHL92) v3.6.1cpimedB292
CSPI04G09110Melon (DHL92) v3.6.1cpimedB307
CSPI04G09110Cucumber (Gy14) v2cgybcpiB168
CSPI04G09110Cucumber (Gy14) v1cgycpiB585