CsaV3_3G028010.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTACCATTGTTGGGATACTTCTAGTTGTTTATCTTATCGACAATTTGCAGGTTTGTTAAAGATCTTCTCATCCAATATGTCAACTCTCCTTTTCCAAATTAGTAACAAGGAAACGGGTGCATCATAAAACAGGTATATCTGCAGTCCTCAACTTTAAGATCAGAAGAGAAACGGAGGACGATGCAAAAGAAAGATGTTGAAATAGATTTCTGGATAGATTATTATAAATTCCAGAAGAAGAAGGAACTCAAAAGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTCAATTTGAAAACACTGCTGGACGTGTTTCCATCTCCATTCATTGAGGAGATAAAGAAAGAACTTTGCTGGGATATCCTAAGGAGGGTGAGTTTTGCTTGGTACATTTGTGAAGTAAATTGGTAGAATAGAAACAAACAACCTTGATCCATGTTTCATTGGCAGATTCCAATGCTTAAAGAATTTGAAGAGGAGAAGATAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTCGCAGAGCAAAGGTATATTATTCGAGAGGGGGAGCCTATTGAGCAGATGCTATTGTTCAAAAAAGGTATGGGATTGACATTTAGCGAGAGCAATGGAACTAGGACAACGATTAACACTTTTGGAAAAGGTGATTTGTTTGGAGAGCAACTACTGAATTGGGCAATGGAAAATCTTTCTGTATCTCTGAAATTCCTTTGTCCCAATGTACTCTCAAGACACAAACCCAAATGGAAGCCTTCGCTCTCAAGGCTATTGATCCACAATATCATACAAGTGGGAGACAAATAGTTAAGTTAAAGTTTAATCTTTCTTGAACTTTATGTTTGCGTTCCTATTTTATAAACTAATTTAAGACAAAGACTTCATACCAATAGAGATA ATGTTTCATTGGCAGATTCCAATGCTTAAAGAATTTGAAGAGGAGAAGATAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTCGCAGAGCAAAGGTATATTATTCGAGAGGGGGAGCCTATTGAGCAGATGCTATTGTTCAAAAAAGGTATGGGATTGACATTTAGCGAGAGCAATGGAACTAGGACAACGATTAACACTTTTGGAAAAGGTGATTTGTTTGGAGAGCAACTACTGAATTGGGCAATGGAAAATCTTTCTGTATCTCTGAAATTCCTTTGTCCCAATGTACTCTCAAGACACAAACCCAAATGGAAGCCTTCGCTCTCAAGGCTATTGATCCACAATATCATACAAGTGGGAGACAAATAG ATGTTTCATTGGCAGATTCCAATGCTTAAAGAATTTGAAGAGGAGAAGATAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTCGCAGAGCAAAGGTATATTATTCGAGAGGGGGAGCCTATTGAGCAGATGCTATTGTTCAAAAAAGGTATGGGATTGACATTTAGCGAGAGCAATGGAACTAGGACAACGATTAACACTTTTGGAAAAGGTGATTTGTTTGGAGAGCAACTACTGAATTGGGCAATGGAAAATCTTTCTGTATCTCTGAAATTCCTTTGTCCCAATGTACTCTCAAGACACAAACCCAAATGGAAGCCTTCGCTCTCAAGGCTATTGATCCACAATATCATACAAGTGGGAGACAAATAG MFHWQIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRTTINTFGKGDLFGEQLLNWAMENLSVSLKFLCPNVLSRHKPKWKPSLSRLLIHNIIQVGDK
BLAST of CsaV3_3G028010.1 vs. NCBI nr
Match: XP_011652817.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus]) HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32 Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]) HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31 Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]) HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31 Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo]) HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31 Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus]) HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29 Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TAIR10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1) HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09 Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TAIR10
Match: AT4G01010.1 (cyclic nucleotide-gated channel 13) HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07 Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TAIR10
Match: AT2G23980.1 (cyclic nucleotide-gated channel 6) HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07 Identity = 25/88 (28.41%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TAIR10
Match: AT4G30560.1 (cyclic nucleotide gated channel 9) HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07 Identity = 25/88 (28.41%), Postives = 49/88 (55.68%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TAIR10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7) HSP 1 Score: 52.4 bits (124), Expect = 2.4e-07 Identity = 24/83 (28.92%), Postives = 46/83 (55.42%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. Swiss-Prot
Match: sp|O65717|CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.0e-08 Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. Swiss-Prot
Match: sp|A0A072VMJ3|CN15C_MEDTR (Protein CNGC15c OS=Medicago truncatula OX=3880 GN=CNGC15C PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06 Identity = 24/82 (29.27%), Postives = 48/82 (58.54%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. Swiss-Prot
Match: sp|Q9LD40|CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06 Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. Swiss-Prot
Match: sp|O82226|CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 GN=CNGC6 PE=1 SV=2) HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06 Identity = 25/88 (28.41%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. Swiss-Prot
Match: sp|Q9M0A4|CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana OX=3702 GN=CNGC9 PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06 Identity = 25/88 (28.41%), Postives = 49/88 (55.68%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31 Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31 Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31 Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TrEMBL
Match: tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.6e-24 Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0
BLAST of CsaV3_3G028010.1 vs. TrEMBL
Match: tr|A0A2P6RR88|A0A2P6RR88_ROSCH (Putative Ion transport domain, transcription regulator, NtcA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0116391 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 8.1e-10 Identity = 34/90 (37.78%), Postives = 58/90 (64.44%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
|