CsaV3_3G028010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G028010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCyclic nucleotide-gated ion channel 1-like protein
Locationchr3 : 24472001 .. 24472906 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTACCATTGTTGGGATACTTCTAGTTGTTTATCTTATCGACAATTTGCAGGTTTGTTAAAGATCTTCTCATCCAATATGTCAACTCTCCTTTTCCAAATTAGTAACAAGGAAACGGGTGCATCATAAAACAGGTATATCTGCAGTCCTCAACTTTAAGATCAGAAGAGAAACGGAGGACGATGCAAAAGAAAGATGTTGAAATAGATTTCTGGATAGATTATTATAAATTCCAGAAGAAGAAGGAACTCAAAAGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTCAATTTGAAAACACTGCTGGACGTGTTTCCATCTCCATTCATTGAGGAGATAAAGAAAGAACTTTGCTGGGATATCCTAAGGAGGGTGAGTTTTGCTTGGTACATTTGTGAAGTAAATTGGTAGAATAGAAACAAACAACCTTGATCCATGTTTCATTGGCAGATTCCAATGCTTAAAGAATTTGAAGAGGAGAAGATAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTCGCAGAGCAAAGGTATATTATTCGAGAGGGGGAGCCTATTGAGCAGATGCTATTGTTCAAAAAAGGTATGGGATTGACATTTAGCGAGAGCAATGGAACTAGGACAACGATTAACACTTTTGGAAAAGGTGATTTGTTTGGAGAGCAACTACTGAATTGGGCAATGGAAAATCTTTCTGTATCTCTGAAATTCCTTTGTCCCAATGTACTCTCAAGACACAAACCCAAATGGAAGCCTTCGCTCTCAAGGCTATTGATCCACAATATCATACAAGTGGGAGACAAATAGTTAAGTTAAAGTTTAATCTTTCTTGAACTTTATGTTTGCGTTCCTATTTTATAAACTAATTTAAGACAAAGACTTCATACCAATAGAGATA

mRNA sequence

ATGTTTCATTGGCAGATTCCAATGCTTAAAGAATTTGAAGAGGAGAAGATAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTCGCAGAGCAAAGGTATATTATTCGAGAGGGGGAGCCTATTGAGCAGATGCTATTGTTCAAAAAAGGTATGGGATTGACATTTAGCGAGAGCAATGGAACTAGGACAACGATTAACACTTTTGGAAAAGGTGATTTGTTTGGAGAGCAACTACTGAATTGGGCAATGGAAAATCTTTCTGTATCTCTGAAATTCCTTTGTCCCAATGTACTCTCAAGACACAAACCCAAATGGAAGCCTTCGCTCTCAAGGCTATTGATCCACAATATCATACAAGTGGGAGACAAATAG

Coding sequence (CDS)

ATGTTTCATTGGCAGATTCCAATGCTTAAAGAATTTGAAGAGGAGAAGATAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTCGCAGAGCAAAGGTATATTATTCGAGAGGGGGAGCCTATTGAGCAGATGCTATTGTTCAAAAAAGGTATGGGATTGACATTTAGCGAGAGCAATGGAACTAGGACAACGATTAACACTTTTGGAAAAGGTGATTTGTTTGGAGAGCAACTACTGAATTGGGCAATGGAAAATCTTTCTGTATCTCTGAAATTCCTTTGTCCCAATGTACTCTCAAGACACAAACCCAAATGGAAGCCTTCGCTCTCAAGGCTATTGATCCACAATATCATACAAGTGGGAGACAAATAG

Protein sequence

MFHWQIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRTTINTFGKGDLFGEQLLNWAMENLSVSLKFLCPNVLSRHKPKWKPSLSRLLIHNIIQVGDK
Homology
[Close]
BLAST of CsaV3_3G028010 vs. NCBI nr
Match: XP_011652817.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0 

Query: 1  MFHWQIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESN 60
          MFH Q+PMLKEFEEEK+EE+MKDMKPMVFAE  YIIREGE +EQMLLF KGMGL FS+S 
Sbjct: 1  MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKST 60

Query: 61 GTRTTINTFGKGDLFGEQLLNWAMENLSVS 91
          G RTTI+TFGKGDLFGEQLL WA+ENL VS
Sbjct: 61 GARTTISTFGKGDLFGEQLLIWAVENLHVS 90

[Close]
BLAST of CsaV3_3G028010 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++ MLKEFEEEK++EMMKDMKPMVF EQ YIIREGEP+EQMLLF KGMGLTFS+S GTRT
Sbjct: 414 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 473

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TIN FGKGDLFGEQLL WA ENL VS
Sbjct: 474 TINAFGKGDLFGEQLLKWAAENLPVS 499

[Close]
BLAST of CsaV3_3G028010 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++ MLKEFEEEK++EMMKDMKPMVF EQ YIIREGEP+EQMLLF KGMGLTFS+S GTRT
Sbjct: 410 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 469

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TIN FGKGDLFGEQLL WA ENL VS
Sbjct: 470 TINAFGKGDLFGEQLLKWAAENLPVS 495

[Close]
BLAST of CsaV3_3G028010 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++ MLKEFEEEK++EMMKDMKPMVF EQ YIIREGEP+EQMLLF KGMGLTFS+S GTRT
Sbjct: 307 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 366

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TIN FGKGDLFGEQLL WA ENL VS
Sbjct: 367 TINAFGKGDLFGEQLLKWAAENLPVS 392

[Close]
BLAST of CsaV3_3G028010 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++PMLKEFEEEK+EEMMKDMKP++FAEQ YIIREGEPIE MLLF KGM LTFS+   TRT
Sbjct: 417 RVPMLKEFEEEKLEEMMKDMKPIIFAEQSYIIREGEPIEHMLLFTKGMALTFSKRTRTRT 476

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TINT GKGDLFGEQLLNWA  +L VS
Sbjct: 477 TINTLGKGDLFGEQLLNWAAGSLPVS 502

[Close]
BLAST of CsaV3_3G028010 vs. TAIR10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 24  MKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRTTINT--FGKGDLFGEQLLN 83
           ++P+++ E+ YI+REG+P+++ML   +G  LT + + G    +N+   G GD  GE+LL 
Sbjct: 502 LQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLT 561

Query: 84  WAMENLSVS 91
           WA++  S S
Sbjct: 562 WALDPHSSS 570

[Close]
BLAST of CsaV3_3G028010 vs. TAIR10
Match: AT4G01010.1 (cyclic nucleotide-gated channel 13)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+ +  +E+ ++ +   +KP+++ E  Y IREG+P+E+ML   +G  ++ + + G   
Sbjct: 471 KVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTG 530

Query: 65  TINT--FGKGDLFGEQLLNWAMENLSVS 91
             N       D  GE LL WA++  S S
Sbjct: 531 FFNAVYLKPSDFCGEDLLTWALDPQSSS 558

[Close]
BLAST of CsaV3_3G028010 vs. TAIR10
Match: AT2G23980.1 (cyclic nucleotide-gated channel 6)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 25/88 (28.41%), Postives = 50/88 (56.82%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+ +  +E  ++ + + +KP +F E+ Y++REG+P+ +ML   +G   + +   G   
Sbjct: 511 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 570

Query: 65  TIN--TFGKGDLFGEQLLNWAMENLSVS 91
             N     +GD  G++LL WA++  S S
Sbjct: 571 FYNRSLLKEGDFCGDELLTWALDPKSGS 598

[Close]
BLAST of CsaV3_3G028010 vs. TAIR10
Match: AT4G30560.1 (cyclic nucleotide gated channel 9)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 25/88 (28.41%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+ +  +E  ++ + + +KP ++ E  Y++REG+P+ +ML   +G   + +   G   
Sbjct: 510 RVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 569

Query: 65  TIN--TFGKGDLFGEQLLNWAMENLSVS 91
             N     +GD  GE+LL WA++  S S
Sbjct: 570 FFNRSLLKEGDFCGEELLTWALDPKSGS 597

[Close]
BLAST of CsaV3_3G028010 vs. TAIR10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7)

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-07
Identity = 24/83 (28.92%), Postives = 46/83 (55.42%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+    +E  ++ + + +KP +F E  YI+REG+P+ +M+   +G   + +   G   
Sbjct: 470 RVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSG 529

Query: 65  TIN--TFGKGDLFGEQLLNWAME 86
             N     +GD  GE+LL WA++
Sbjct: 530 FFNRGLLKEGDFCGEELLTWALD 552

[Close]
BLAST of CsaV3_3G028010 vs. Swiss-Prot
Match: sp|O65717|CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-08
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 24  MKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRTTINT--FGKGDLFGEQLLN 83
           ++P+++ E+ YI+REG+P+++ML   +G  LT + + G    +N+   G GD  GE+LL 
Sbjct: 502 LQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLT 561

Query: 84  WAMENLSVS 91
           WA++  S S
Sbjct: 562 WALDPHSSS 570

[Close]
BLAST of CsaV3_3G028010 vs. Swiss-Prot
Match: sp|A0A072VMJ3|CN15C_MEDTR (Protein CNGC15c OS=Medicago truncatula OX=3880 GN=CNGC15C PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 24/82 (29.27%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 6   IPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRTT 65
           +P+  + +E  ++ + + +KP +  E  Y++REG+P+ +ML   +G   +++ + G    
Sbjct: 478 VPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRDGF 537

Query: 66  INT--FGKGDLFGEQLLNWAME 86
            N+   G GD  GE+LL WA++
Sbjct: 538 FNSCRIGPGDFCGEELLTWALD 559

[Close]
BLAST of CsaV3_3G028010 vs. Swiss-Prot
Match: sp|Q9LD40|CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+ +  +E+ ++ +   +KP+++ E  Y IREG+P+E+ML   +G  ++ + + G   
Sbjct: 471 KVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTG 530

Query: 65  TINT--FGKGDLFGEQLLNWAMENLSVS 91
             N       D  GE LL WA++  S S
Sbjct: 531 FFNAVYLKPSDFCGEDLLTWALDPQSSS 558

[Close]
BLAST of CsaV3_3G028010 vs. Swiss-Prot
Match: sp|O82226|CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 25/88 (28.41%), Postives = 50/88 (56.82%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+ +  +E  ++ + + +KP +F E+ Y++REG+P+ +ML   +G   + +   G   
Sbjct: 511 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 570

Query: 65  TIN--TFGKGDLFGEQLLNWAMENLSVS 91
             N     +GD  G++LL WA++  S S
Sbjct: 571 FYNRSLLKEGDFCGDELLTWALDPKSGS 598

[Close]
BLAST of CsaV3_3G028010 vs. Swiss-Prot
Match: sp|Q9M0A4|CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana OX=3702 GN=CNGC9 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 25/88 (28.41%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++P+ +  +E  ++ + + +KP ++ E  Y++REG+P+ +ML   +G   + +   G   
Sbjct: 510 RVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 569

Query: 65  TIN--TFGKGDLFGEQLLNWAMENLSVS 91
             N     +GD  GE+LL WA++  S S
Sbjct: 570 FFNRSLLKEGDFCGEELLTWALDPKSGS 597

[Close]
BLAST of CsaV3_3G028010 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++ MLKEFEEEK++EMMKDMKPMVF EQ YIIREGEP+EQMLLF KGMGLTFS+S GTRT
Sbjct: 307 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 366

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TIN FGKGDLFGEQLL WA ENL VS
Sbjct: 367 TINAFGKGDLFGEQLLKWAAENLPVS 392

[Close]
BLAST of CsaV3_3G028010 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++ MLKEFEEEK++EMMKDMKPMVF EQ YIIREGEP+EQMLLF KGMGLTFS+S GTRT
Sbjct: 414 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 473

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TIN FGKGDLFGEQLL WA ENL VS
Sbjct: 474 TINAFGKGDLFGEQLLKWAAENLPVS 499

[Close]
BLAST of CsaV3_3G028010 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++ MLKEFEEEK++EMMKDMKPMVF EQ YIIREGEP+EQMLLF KGMGLTFS+S GTRT
Sbjct: 410 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 469

Query: 65  TINTFGKGDLFGEQLLNWAMENLSVS 91
           TIN FGKGDLFGEQLL WA ENL VS
Sbjct: 470 TINAFGKGDLFGEQLLKWAAENLPVS 495

[Close]
BLAST of CsaV3_3G028010 vs. TrEMBL
Match: tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-24
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNGTRT 64
           ++PMLKEFEEEK+EEMMKDMK M+FAE  YII+EGE +EQMLLF KGMGL FS+S G RT
Sbjct: 250 RVPMLKEFEEEKLEEMMKDMKLMIFAEHNYIIQEGELVEQMLLFTKGMGLKFSKSIGART 309

Query: 65  TINTFGKGDLFGEQLL 81
           TI+TFGKGDLFGEQLL
Sbjct: 310 TISTFGKGDLFGEQLL 325

[Close]
BLAST of CsaV3_3G028010 vs. TrEMBL
Match: tr|A0A2P6RR88|A0A2P6RR88_ROSCH (Putative Ion transport domain, transcription regulator, NtcA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0116391 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.1e-10
Identity = 34/90 (37.78%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 5   QIPMLKEFEEEKIEEMMKDMKPMVFAEQRYIIREGEPIEQMLLFKKGMGLTFSESNG--- 64
           ++ MLK  +E+ +  + + +KP+++AE  YIIREGEP+E+M+   +G+  T++ + G   
Sbjct: 454 KVSMLKHMDEQVLNAICEHLKPVIYAEDNYIIREGEPLEKMIFITQGIAWTYATNIGGVT 513

Query: 65  -TRTTINTFGKGDLFGEQLLNWAMENLSVS 91
            + + I+   KGD +GE+LLNWA    S S
Sbjct: 514 SSSSNIDCLEKGDFYGEELLNWAFNFASFS 543

The following BLAST results are available for this feature:
BLAST of CsaV3_3G028010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652817.13.9e-3281.11PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus][more]
XP_008449547.11.9e-3182.56PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo][more]
XP_016900693.11.9e-3182.56PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo][more]
XP_016900694.11.9e-3182.56PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ... [more]
XP_011651603.11.8e-2979.07PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu... [more]
BLAST of CsaV3_3G028010 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53130.13.3e-0937.68cyclic nucleotide gated channel 1[more]
AT4G01010.11.4e-0729.55cyclic nucleotide-gated channel 13[more]
AT2G23980.11.8e-0728.41cyclic nucleotide-gated channel 6[more]
AT4G30560.11.8e-0728.41cyclic nucleotide gated channel 9[more]
AT1G15990.12.4e-0728.92cyclic nucleotide gated channel 7[more]
BLAST of CsaV3_3G028010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O65717|CNGC1_ARATH6.0e-0837.68Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 P... [more]
sp|A0A072VMJ3|CN15C_MEDTR2.5e-0629.27Protein CNGC15c OS=Medicago truncatula OX=3880 GN=CNGC15C PE=1 SV=1[more]
sp|Q9LD40|CNG13_ARATH2.5e-0629.55Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|O82226|CNGC6_ARATH3.3e-0628.41Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9M0A4|CNGC9_ARATH3.3e-0628.41Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of CsaV3_3G028010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYA3|A0A1S4DYA3_CUCME1.3e-3182.56cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S3BLM4|A0A1S3BLM4_CUCME1.3e-3182.56cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME1.3e-3182.56cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA2.6e-2478.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1[more]
tr|A0A2P6RR88|A0A2P6RR88_ROSCH8.1e-1037.78Putative Ion transport domain, transcription regulator, NtcA OS=Rosa chinensis O... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018490cNMP-bd-like
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005216 ion channel activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G028010.1CsaV3_3G028010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 6..104
e-value: 6.9E-18
score: 66.6
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 28..79
e-value: 6.2E-7
score: 29.3
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 8..80
score: 13.92
IPR000595Cyclic nucleotide-binding domainCDDcd00038CAP_EDcoord: 24..80
e-value: 1.21201E-8
score: 47.3206
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILYSSF51206cAMP-binding domain-likecoord: 5..90

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G028010CSPI03G26530Wild cucumber (PI 183967)cpicucB144
CsaV3_3G028010CsGy3G024780Cucumber (Gy14) v2cgybcucB117
CsaV3_3G028010MELO3C029880.2Melon (DHL92) v3.6.1cucmedB196
CsaV3_3G028010Bhi01G001094Wax gourdcucwgoB297
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G028010Silver-seed gourdcarcucB1031
CsaV3_3G028010Cucurbita maxima (Rimu)cmacucB0378
CsaV3_3G028010Cucurbita maxima (Rimu)cmacucB0492
CsaV3_3G028010Cucurbita moschata (Rifu)cmocucB0481
CsaV3_3G028010Cucurbita pepo (Zucchini)cpecucB0038
CsaV3_3G028010Cucurbita pepo (Zucchini)cpecucB0253
CsaV3_3G028010Bottle gourd (USVL1VR-Ls)cuclsiB238
CsaV3_3G028010Watermelon (Charleston Gray)cucwcgB247
CsaV3_3G028010Watermelon (97103) v1cucwmB263
CsaV3_3G028010Watermelon (97103) v2cucwmbB226