CsaV3_3G018160.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAGATATTTTTAGTTCCAAACAAATTAATATATGGGAATGTATGATGATGGAAAAGGATAGATATAGTGAACTACTTAAAGTGATCATGAAAAATCTCAATTACTAATTCAAATTTTTTATTGTTCCAAATGGACGAAAAAAAACAGATGGAGTGAGAGAAGTTTAGCCTTCTTTGTTCTATTAATTTGGTGGTAGAGGTGGGAGAAGGTTAATTTGGTTTTCAAATGTTCTTATTTTCTTTCTTAAAGAATATATTGGGCCTATTGGGCCTATTGGGCCTATTGAGCCATGATAAACAAAGGAGGGCCTCAAACGAGGAATGATTCTGTGTAATTAAGAAGAGGAAGAAGGGGAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGGTTTGAACTCTTAAATTCTCTAATCTTGAATTTGTTCCTTTGCTTGTTTTCTTTTCTATGGATTTGTGGATCCGGTTTTTAGGAGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGCTAAATTACTTTGATTATGAACTATCCAAAATTTTTATAAATGCTTCAAAATACTTTGTCATCAACGAACATATACTTAATTGTCGATATTTCAATGTATTAATTGTGTTCTT ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYG
BLAST of CsaV3_3G018160.1 vs. NCBI nr
Match: XP_004140718.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_3G199560 [Cucumis sativus]) HSP 1 Score: 171.8 bits (434), Expect = 9.9e-40 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]) HSP 1 Score: 164.5 bits (415), Expect = 1.6e-37 Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba]) HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34 Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34 Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. NCBI nr
Match: POE75952.1 (lyr motif-containing protein [Quercus suber]) HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34 Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. TAIR10
Match: AT3G19508.1 (unknown protein) HSP 1 Score: 127.5 bits (319), Expect = 3.9e-30 Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. Swiss-Prot
Match: sp|Q1G3M2|LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 7.0e-29 Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. Swiss-Prot
Match: sp|A9SNJ1|LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 9.5e-10 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. TrEMBL
Match: tr|A0A0A0L970|A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 6.5e-40 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. TrEMBL
Match: tr|A0A1S3C3W4|A0A1S3C3W4_CUCME (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=3 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37 Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. TrEMBL
Match: tr|A0A2P4J593|A0A2P4J593_QUESU (Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.1e-34 Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. TrEMBL
Match: tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA (LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33 Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0
BLAST of CsaV3_3G018160.1 vs. TrEMBL
Match: tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 2.0e-33 Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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