CsaV3_2G032810.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G032810.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribosomal protein L24-like protein
Location	chr2 : 21682623 .. 21685390 (-)
Sequence length	504

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATACTAAATAGAAAGTTAGGTCACAATATTCAAGAGGTGAAGTTCAAGCTGCTTCTCATCTGACGCCGTTGCCGGCTCTCTCCTTCTCCGTCTCCAGCGTTCATCTCCGATCGTCTCTTCTTCTCAAAGTCTCCGTCGCTCCCGCTCGGATCTTCCTCACCGTTGCGTTGCTGTGCGGCCGCGCCGATATTCCGTTGTCGAGGGCTGCATTGCTTGAGTGAGTACATATTTCTTTCCTCCAACATTTAGAACCATACTTGAACAATATCTATTTTATGGATGGTACAACCTATCGAGTATAAGCTCTTAGAATTGCTGCCTTCGCTTTGTTAGTTTTATCACTTATTATCTACTTGTTTTCATTCCGGAGATTGGGAAAAACCTTGCCTTACAGAGTTTTCATTTATTATCTAGTTGGTTTTGGGAGATTAGGGAAAAACTTTCAGACATATTGGCCTTACTTTGTTAGTTTTATCATTTATTATCTGCTTGGTTTATTTCCAATGTGCTAGGAGAGATTGGAGATAACAACCTTCAGTCACATTGGCCTTACTTTGGTAGTTTTATTATTTATTATCTACTCGGTTTCATTCCACTTTGTTTCAATGAAAATGATAGGGTAGATTGGATGAAAACTTTGTAGTTCATTATTATCTACTTTCATTCCACTTAGAGGGGGGAGTCAGTTCGTTAGTTTTATTATTTACTATCTACTTGGTTTCATTCCACTTCGTTTAATTGAAAATGAGAGTGAAGATTGGAGAAAAACCTTAAGTTTTATTGGTCTTACTTTGTTAGTTTTATTGGTCTTACTTTGTTAGTTTTATCATTTATTATCCGTTCCACTCTGTTTAAGTGAAACTAAGAGGGGGAGATTGGGGAAAAAATCTCCATCCCGCCACCGGCGCTCTAGGCTCCTACTCGATACCGGCTCCCGACTCACTGTGAACCCTCAACTTTCACTGTCTCTTCCTTCCGACCAAGTCACTGCCGTTCTCTTCTTCTTTCACTCTCTCGCCTCTTTGATTGCCTAACTCAGTGGTTCAGTCCTTAGGGCCGTTGCTGAGATTGCACCCAATGTTTTATATATTTGTTTGTTAGGTTATTGTTGGTTTATTCCCTGCACCACGGATAAGAAAGTGAAGAACTGTTTGTTTTCTTCATTGGATTTCTTCTTTAAATTAGTGTTAATGAAAATATAATTTCTTCATTGGATTTCTTTTTTAAATTAGTGTTAATGAAAATATCATAACTATGTATACCTCACAAATTAGTAACATAAATAGATTGAAATTATGAATAAAAAGTAGCAAAATACATATTAGTAGAGATTTTTCTCTGTTCCAGTCGATCTTCTGAATGTATGAGTTGCAGTTCATTTGATTATCTTATTCGTGCCTTTTGTTGCAGGAAATTTAGGGTTTGTTATTTGCTGAAGAAAAAAAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGGTAAGGACTAGGTTGCGAACTTCCACGATTCCTATGCTTTGTTCTGCACATTGCTTGTATGATCTTACTTGCTAATGCTTATGGATTGACAAAACTACATCGTTCTGTTCTACCTTGGCTTGTTTGTGATGCATATTTTAGGCTATAGAAATAGATAGTTGTTCTTGTCTTGCTGTGCTTTTAAATTAGCAATGGTGGGTGGGAGCCCCATGTTCCTATACCCTAATGTGATTTTCTCTGCAGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGTAAGCTTTCTTCATTTATTTGTAGAGCAAATTGGATTTTGTCTTCATCTTTTTAATTGTTGTTTCATTTGTATTATCCAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGGTTGAAATTTTTTTCCATTCCCATTTGTTATATGCCTAAATGTTTTGCGAATACTATTTCAGTTGTAACTCAGGATCGTTCACATTTGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGAGTTGTCAATCTTATACCACCATATCAAATATTTATGTAGTAGTCACGTGGACAGACTTCTAAGAAAATTTATTGAATCATTTCCAATTTTGTTTGAGGCTATACATACAGTGGTTTGAGGCAATACTCAAATTTTTGTTGTTGTTGTTGTTGTTTATGGTACCTTTTGTATTTTGTTATTTTCTTTTTCATCCATGGATAAGAAGTTTGTTGTATTTTGTTTAGTAGTCCATTAGATATAGATCTTAGGGGGAACTAACCTCCAGCCAACTTTCTATTGTGCCTGCCCATAACTTCTGTTTACCTTCCTCTTGTCTCATGCCTTAGTTTGAAGTAATAACATAGGTTAACAGACGATTAAAGAGATGAGATATCTTGAATCAAAGTGAAACACAGTTTTTA

mRNA sequence

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGA

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE

Homology

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BLAST of CsaV3_2G032810.1 vs. NCBI nr
Match: XP_011649861.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_011652414.1 PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus] >KGN59956.1 hypothetical protein Csa_3G855990 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 9.4e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

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BLAST of CsaV3_2G032810.1 vs. NCBI nr
Match: KGN63032.1 (hypothetical protein Csa_2G385010 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 9.4e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

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BLAST of CsaV3_2G032810.1 vs. NCBI nr
Match: XP_008456562.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 2.1e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]

BLAST of CsaV3_2G032810.1 vs. NCBI nr
Match: XP_008466567.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 2.1e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]

BLAST of CsaV3_2G032810.1 vs. NCBI nr
Match: XP_023535971.1 (probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.4 bits (742), Expect = 3.8e-75
Identity = 143/167 (85.63%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 167

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BLAST of CsaV3_2G032810.1 vs. TAIR10
Match: AT2G44860.1 (Ribosomal protein L24e family protein)

HSP 1 Score: 211.8 bits (538), Expect = 3.2e-55
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

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BLAST of CsaV3_2G032810.1 vs. TAIR10
Match: AT3G53020.1 (Ribosomal protein L24e family protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-14
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

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BLAST of CsaV3_2G032810.1 vs. TAIR10
Match: AT2G36620.1 (ribosomal protein L24)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-13
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKE 120
           KD  +++     R   +P  Y R++   TL+ I+K  K     E R  AR    ++ KE
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQK--KRAEKPEVRDAAREAALREIKE 117

[Close]

BLAST of CsaV3_2G032810.1 vs. Swiss-Prot
Match: sp|O22165|RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-54
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CsaV3_2G032810.1 vs. Swiss-Prot
Match: sp|Q86B05|RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 77/142 (54.23%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS P+YPGHG+ FVRND   FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K+MT D T EFE+ R+RP KYDR +  +T+ A+ ++ KI+  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAKKELDQSISLVKAPSVLKE 143
           ++  KE++Q++SL++ PS L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]

BLAST of CsaV3_2G032810.1 vs. Swiss-Prot
Match: sp|Q99L28|RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-38
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   MEE
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMEE 161

[Close]

BLAST of CsaV3_2G032810.1 vs. Swiss-Prot
Match: sp|Q9UHA3|RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.7e-38
Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMED 161

[Close]

BLAST of CsaV3_2G032810.1 vs. Swiss-Prot
Match: sp|Q5RF04|RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-37
Identity = 81/169 (47.93%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK +RNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMED 161

[Close]

BLAST of CsaV3_2G032810.1 vs. TrEMBL
Match: tr|A0A0A0LIW9|A0A0A0LIW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.2e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

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BLAST of CsaV3_2G032810.1 vs. TrEMBL
Match: tr|A0A0A0LQI2|A0A0A0LQI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.2e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

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BLAST of CsaV3_2G032810.1 vs. TrEMBL
Match: tr|A0A1S3C349|A0A1S3C349_CUCME (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103496478 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]

BLAST of CsaV3_2G032810.1 vs. TrEMBL
Match: tr|A0A1S3CRL0|A0A1S3CRL0_CUCME (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103503948 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]

BLAST of CsaV3_2G032810.1 vs. TrEMBL
Match: tr|K4D2A8|K4D2A8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101249690 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.5e-70
Identity = 137/167 (82.04%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS +YPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRNVTE+TLKAIKKIDKIR+DRE RHIA+R +G KAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKIRVDREERHIAKRMKGNKAKEQ 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REA KEL+QSI +VKAPSVL ++PSLTLP  KVKV+  QSE++RMEE
Sbjct: 121 REATKELEQSIHMVKAPSVLFKEPSLTLP-TKVKVLQKQSEENRMEE 166

The following BLAST results are available for this feature:

BLAST of CsaV3_2G032810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649861.1	9.4e-90	100.00	PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_0116...	[more]
KGN63032.1	9.4e-90	100.00	hypothetical protein Csa_2G385010 [Cucumis sativus]	[more]
XP_008456562.1	2.1e-89	99.40	PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo]	[more]
XP_008466567.1	2.1e-89	99.40	PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo]	[more]
XP_023535971.1	3.8e-75	85.63	probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_2G032810.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44860.1	3.2e-55	66.07	Ribosomal protein L24e family protein	[more]
AT3G53020.1	6.0e-14	33.86	Ribosomal protein L24e family protein	[more]
AT2G36620.1	6.7e-13	36.13	ribosomal protein L24	[more]

BLAST of CsaV3_2G032810.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22165\|RLP24_ARATH	5.7e-54	66.07	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
sp\|Q86B05\|RLP24_DICDI	1.1e-41	54.23	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
sp\|Q99L28\|RLP24_MOUSE	4.4e-38	49.11	Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P...	[more]
sp\|Q9UHA3\|RLP24_HUMAN	9.7e-38	48.52	Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE...	[more]
sp\|Q5RF04\|RLP24_PONAB	2.2e-37	47.93	Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE...	[more]

BLAST of CsaV3_2G032810.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIW9\|A0A0A0LIW9_CUCSA	6.2e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=4 SV=1	[more]
tr\|A0A0A0LQI2\|A0A0A0LQI2_CUCSA	6.2e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=4 SV=1	[more]
tr\|A0A1S3C349\|A0A1S3C349_CUCME	1.4e-89	99.40	probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1034964...	[more]
tr\|A0A1S3CRL0\|A0A1S3CRL0_CUCME	1.4e-89	99.40	probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1035039...	[more]
tr\|K4D2A8\|K4D2A8_SOLLC	5.5e-70	82.04	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101249690 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023442	Ribosomal_L24e_CS
IPR038630	L24e/L24_sf
IPR000988	Ribosomal_L24e-rel
IPR011017	TRASH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G032810	CsaV3_2G032810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G032810.1	CsaV3_2G032810.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G032810.1.cds5	CsaV3_2G032810.1.cds5	CDS
CsaV3_2G032810.1.cds4	CsaV3_2G032810.1.cds4	CDS
CsaV3_2G032810.1.cds3	CsaV3_2G032810.1.cds3	CDS
CsaV3_2G032810.1.cds2	CsaV3_2G032810.1.cds2	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G032810.1.exon5	CsaV3_2G032810.1.exon5	exon
CsaV3_2G032810.1.exon4	CsaV3_2G032810.1.exon4	exon
CsaV3_2G032810.1.exon3	CsaV3_2G032810.1.exon3	exon
CsaV3_2G032810.1.exon2	CsaV3_2G032810.1.exon2	exon
CsaV3_2G032810.1.exon1	CsaV3_2G032810.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 6..44 e-value: 5.7E-12 score: 55.8
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 1..65 e-value: 9.0E-35 score: 118.6
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..150
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 1..54 e-value: 2.17052E-29 score: 103.036
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	G3DSA:2.30.170.20		coord: 1..68 e-value: 8.0E-33 score: 114.3
None	No IPR available	PANTHER	PTHR10792:SF8	RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED	coord: 1..150
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..56
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 8..25