CsaV3_2G032810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G032810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRibosomal protein L24-like protein
Locationchr2 : 21682623 .. 21685390 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATACTAAATAGAAAGTTAGGTCACAATATTCAAGAGGTGAAGTTCAAGCTGCTTCTCATCTGACGCCGTTGCCGGCTCTCTCCTTCTCCGTCTCCAGCGTTCATCTCCGATCGTCTCTTCTTCTCAAAGTCTCCGTCGCTCCCGCTCGGATCTTCCTCACCGTTGCGTTGCTGTGCGGCCGCGCCGATATTCCGTTGTCGAGGGCTGCATTGCTTGAGTGAGTACATATTTCTTTCCTCCAACATTTAGAACCATACTTGAACAATATCTATTTTATGGATGGTACAACCTATCGAGTATAAGCTCTTAGAATTGCTGCCTTCGCTTTGTTAGTTTTATCACTTATTATCTACTTGTTTTCATTCCGGAGATTGGGAAAAACCTTGCCTTACAGAGTTTTCATTTATTATCTAGTTGGTTTTGGGAGATTAGGGAAAAACTTTCAGACATATTGGCCTTACTTTGTTAGTTTTATCATTTATTATCTGCTTGGTTTATTTCCAATGTGCTAGGAGAGATTGGAGATAACAACCTTCAGTCACATTGGCCTTACTTTGGTAGTTTTATTATTTATTATCTACTCGGTTTCATTCCACTTTGTTTCAATGAAAATGATAGGGTAGATTGGATGAAAACTTTGTAGTTCATTATTATCTACTTTCATTCCACTTAGAGGGGGGAGTCAGTTCGTTAGTTTTATTATTTACTATCTACTTGGTTTCATTCCACTTCGTTTAATTGAAAATGAGAGTGAAGATTGGAGAAAAACCTTAAGTTTTATTGGTCTTACTTTGTTAGTTTTATTGGTCTTACTTTGTTAGTTTTATCATTTATTATCCGTTCCACTCTGTTTAAGTGAAACTAAGAGGGGGAGATTGGGGAAAAAATCTCCATCCCGCCACCGGCGCTCTAGGCTCCTACTCGATACCGGCTCCCGACTCACTGTGAACCCTCAACTTTCACTGTCTCTTCCTTCCGACCAAGTCACTGCCGTTCTCTTCTTCTTTCACTCTCTCGCCTCTTTGATTGCCTAACTCAGTGGTTCAGTCCTTAGGGCCGTTGCTGAGATTGCACCCAATGTTTTATATATTTGTTTGTTAGGTTATTGTTGGTTTATTCCCTGCACCACGGATAAGAAAGTGAAGAACTGTTTGTTTTCTTCATTGGATTTCTTCTTTAAATTAGTGTTAATGAAAATATAATTTCTTCATTGGATTTCTTTTTTAAATTAGTGTTAATGAAAATATCATAACTATGTATACCTCACAAATTAGTAACATAAATAGATTGAAATTATGAATAAAAAGTAGCAAAATACATATTAGTAGAGATTTTTCTCTGTTCCAGTCGATCTTCTGAATGTATGAGTTGCAGTTCATTTGATTATCTTATTCGTGCCTTTTGTTGCAGGAAATTTAGGGTTTGTTATTTGCTGAAGAAAAAAAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGGTAAGGACTAGGTTGCGAACTTCCACGATTCCTATGCTTTGTTCTGCACATTGCTTGTATGATCTTACTTGCTAATGCTTATGGATTGACAAAACTACATCGTTCTGTTCTACCTTGGCTTGTTTGTGATGCATATTTTAGGCTATAGAAATAGATAGTTGTTCTTGTCTTGCTGTGCTTTTAAATTAGCAATGGTGGGTGGGAGCCCCATGTTCCTATACCCTAATGTGATTTTCTCTGCAGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGTAAGCTTTCTTCATTTATTTGTAGAGCAAATTGGATTTTGTCTTCATCTTTTTAATTGTTGTTTCATTTGTATTATCCAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGGTTGAAATTTTTTTCCATTCCCATTTGTTATATGCCTAAATGTTTTGCGAATACTATTTCAGTTGTAACTCAGGATCGTTCACATTTGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGAGTTGTCAATCTTATACCACCATATCAAATATTTATGTAGTAGTCACGTGGACAGACTTCTAAGAAAATTTATTGAATCATTTCCAATTTTGTTTGAGGCTATACATACAGTGGTTTGAGGCAATACTCAAATTTTTGTTGTTGTTGTTGTTGTTTATGGTACCTTTTGTATTTTGTTATTTTCTTTTTCATCCATGGATAAGAAGTTTGTTGTATTTTGTTTAGTAGTCCATTAGATATAGATCTTAGGGGGAACTAACCTCCAGCCAACTTTCTATTGTGCCTGCCCATAACTTCTGTTTACCTTCCTCTTGTCTCATGCCTTAGTTTGAAGTAATAACATAGGTTAACAGACGATTAAAGAGATGAGATATCTTGAATCAAAGTGAAACACAGTTTTTA

mRNA sequence

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGA

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Homology
[Close]
BLAST of CsaV3_2G032810 vs. NCBI nr
Match: XP_011649861.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_011652414.1 PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus] >KGN59956.1 hypothetical protein Csa_3G855990 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 9.4e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. NCBI nr
Match: KGN63032.1 (hypothetical protein Csa_2G385010 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 9.4e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]
BLAST of CsaV3_2G032810 vs. NCBI nr
Match: XP_008456562.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 2.1e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. NCBI nr
Match: XP_008466567.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 2.1e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. NCBI nr
Match: XP_023535971.1 (probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.4 bits (742), Expect = 3.8e-75
Identity = 143/167 (85.63%), Postives = 155/167 (92.81%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. TAIR10
Match: AT2G44860.1 (Ribosomal protein L24e family protein)

HSP 1 Score: 211.8 bits (538), Expect = 3.2e-55
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of CsaV3_2G032810 vs. TAIR10
Match: AT3G53020.1 (Ribosomal protein L24e family protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-14
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

[Close]
BLAST of CsaV3_2G032810 vs. TAIR10
Match: AT2G36620.1 (ribosomal protein L24)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-13
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKE 120
           KD  +++     R   +P  Y R++   TL+ I+K  K     E R  AR    ++ KE
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQK--KRAEKPEVRDAAREAALREIKE 117

[Close]
BLAST of CsaV3_2G032810 vs. Swiss-Prot
Match: sp|O22165|RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-54
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of CsaV3_2G032810 vs. Swiss-Prot
Match: sp|Q86B05|RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 77/142 (54.23%), Postives = 107/142 (75.35%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS P+YPGHG+ FVRND   FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K+MT D T EFE+ R+RP KYDR +  +T+ A+ ++ KI+  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAKKELDQSISLVKAPSVLKE 143
           ++  KE++Q++SL++ PS L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]
BLAST of CsaV3_2G032810 vs. Swiss-Prot
Match: sp|Q99L28|RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-38
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   MEE
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMEE 161

[Close]
BLAST of CsaV3_2G032810 vs. Swiss-Prot
Match: sp|Q9UHA3|RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.7e-38
Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMED 161

[Close]
BLAST of CsaV3_2G032810 vs. Swiss-Prot
Match: sp|Q5RF04|RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-37
Identity = 81/169 (47.93%), Postives = 118/169 (69.82%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK +RNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMED 161

[Close]
BLAST of CsaV3_2G032810 vs. TrEMBL
Match: tr|A0A0A0LIW9|A0A0A0LIW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.2e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. TrEMBL
Match: tr|A0A0A0LQI2|A0A0A0LQI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.2e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]
BLAST of CsaV3_2G032810 vs. TrEMBL
Match: tr|A0A1S3C349|A0A1S3C349_CUCME (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103496478 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. TrEMBL
Match: tr|A0A1S3CRL0|A0A1S3CRL0_CUCME (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103503948 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]
BLAST of CsaV3_2G032810 vs. TrEMBL
Match: tr|K4D2A8|K4D2A8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101249690 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.5e-70
Identity = 137/167 (82.04%), Postives = 152/167 (91.02%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS +YPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRNVTE+TLKAIKKIDKIR+DRE RHIA+R +G KAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKIRVDREERHIAKRMKGNKAKEQ 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REA KEL+QSI +VKAPSVL ++PSLTLP  KVKV+  QSE++RMEE
Sbjct: 121 REATKELEQSIHMVKAPSVLFKEPSLTLP-TKVKVLQKQSEENRMEE 166

The following BLAST results are available for this feature:
BLAST of CsaV3_2G032810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649861.19.4e-90100.00PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_0116... [more]
KGN63032.19.4e-90100.00hypothetical protein Csa_2G385010 [Cucumis sativus][more]
XP_008456562.12.1e-8999.40PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
XP_008466567.12.1e-8999.40PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
XP_023535971.13.8e-7585.63probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_2G032810 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44860.13.2e-5566.07Ribosomal protein L24e family protein[more]
AT3G53020.16.0e-1433.86Ribosomal protein L24e family protein[more]
AT2G36620.16.7e-1336.13ribosomal protein L24[more]
BLAST of CsaV3_2G032810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22165|RLP24_ARATH5.7e-5466.07Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
sp|Q86B05|RLP24_DICDI1.1e-4154.23Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ... [more]
sp|Q99L28|RLP24_MOUSE4.4e-3849.11Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P... [more]
sp|Q9UHA3|RLP24_HUMAN9.7e-3848.52Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE... [more]
sp|Q5RF04|RLP24_PONAB2.2e-3747.93Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE... [more]
BLAST of CsaV3_2G032810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIW9|A0A0A0LIW9_CUCSA6.2e-90100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=4 SV=1[more]
tr|A0A0A0LQI2|A0A0A0LQI2_CUCSA6.2e-90100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=4 SV=1[more]
tr|A0A1S3C349|A0A1S3C349_CUCME1.4e-8999.40probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1034964... [more]
tr|A0A1S3CRL0|A0A1S3CRL0_CUCME1.4e-8999.40probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1035039... [more]
tr|K4D2A8|K4D2A8_SOLLC5.5e-7082.04Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101249690 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023442Ribosomal_L24e_CS
IPR038630L24e/L24_sf
IPR000988Ribosomal_L24e-rel
IPR011017TRASH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:1902626 assembly of large subunit precursor of preribosome
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G032810.1CsaV3_2G032810.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
e-value: 5.7E-12
score: 55.8
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
e-value: 9.0E-35
score: 118.6
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..150
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 2.17052E-29
score: 103.036
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3DG3DSA:2.30.170.20coord: 1..68
e-value: 8.0E-33
score: 114.3
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 1..150
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 8..25

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G032810CSPI02G24250Wild cucumber (PI 183967)cpicucB081
CsaV3_2G032810Cucsa.163160Cucumber (Gy14) v1cgycucB247
CsaV3_2G032810CsGy2G024050Cucumber (Gy14) v2cgybcucB065
CsaV3_2G032810MELO3C019857Melon (DHL92) v3.5.1cucmeB125
CsaV3_2G032810MELO3C019857.2Melon (DHL92) v3.6.1cucmedB119
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G032810Silver-seed gourdcarcucB0289
CsaV3_2G032810Silver-seed gourdcarcucB0720
CsaV3_2G032810Cucurbita maxima (Rimu)cmacucB0328
CsaV3_2G032810Cucurbita maxima (Rimu)cmacucB0828
CsaV3_2G032810Cucurbita moschata (Rifu)cmocucB0323
CsaV3_2G032810Cucurbita moschata (Rifu)cmocucB0813
CsaV3_2G032810Cucurbita moschata (Rifu)cmocucB0925
CsaV3_2G032810Cucurbita pepo (Zucchini)cpecucB0193
CsaV3_2G032810Cucurbita pepo (Zucchini)cpecucB0483
CsaV3_2G032810Bottle gourd (USVL1VR-Ls)cuclsiB157
CsaV3_2G032810Watermelon (Charleston Gray)cucwcgB174
CsaV3_2G032810Watermelon (97103) v1cucwmB122
CsaV3_2G032810Watermelon (97103) v2cucwmbB161
CsaV3_2G032810Wax gourdcucwgoB176