MELO3C019857 (gene) Melon (DHL92) v3.5.1

NameMELO3C019857
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description60S ribosomal protein L24
Locationchr3 : 21822634 .. 21825008 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTTATTATTAATGTAGTAAATACTAAATAGAAAGTTAGGTCACGCCGCCTCTATCATCTCTTGGTCACTCTCTCGTCTCGGCCTCTCGTCTGACGCCGTCGCCGGCGTTCAATCGTCTCTCCTTCTCAGTCTCCGGCGTTCATCGCCGATCGTCTCTACTTCTCAGAAGTCTCCGATCATTCGCTGGCGCTTGGCTCTCCCTAACCGTTGCTTTGCTTTGTTGTGTTGCCGTTGGCTACGATACTTTTTGCACTTCAATCGGATTATTTTTCTAATAACTTTTGCTTAAGTGAGTACATATTTTCTCTCTACTTAGAACTTTTGGATGACATTCATGACCATGCTTGAACAAGATTTATTCTAGACGATAAGTTCTTAGAATTGGGGGATGCTTTGGTAGTTTTATCATTTCTTATCTACTTGGTTTGATTCAACTCTGTTTAAGTGAAACCATCCGGGGGAGATTGGGAAAAACCTTCCAGGTGAGATTGGGGAAAAACCTTCCAGGTGAGAATGGGGAAAAACCTTCGGTCATATTGACCTTACTTTGGTAGTTTTATCATTTATTATCTATCTAGTTGGTTTGAGTGAAAATGGGAGTGGGAAAAACCTATCATATTGGCCTTACTTTGGTAGCTTTATTATTTATTATCTACTTGTTTTCATTCCTTTGTTCAAGTGAAAATGGAAGGTAGATTGGAGAAAAACCTTCAGTCATTACTTTGGTAGTTTTATTATTTATTATCTACTTGGTTTTGTTCCACCTTGTTTAACAGGATTGATTGGAGGAAAACCTTCAGTCATATTGGCCTTTAGTCATTCCTACTCGACATTGTCTTAGGGAAGTCACCACCGTCGGTGGGATCGCACCCAATGTTTTATTTATTTGTTTGTTAGGTTATTGTTGGTTTATTCTCTGCACCCACGGAACGGAGAAGAAAGTAAAGAACTGTATATTTTCTTCATTGGATTTGTTCTTCAAATTAGCGTTATGAAAATATAAAAACAATGTCTACCTGAAAAATTAGTAACATAAATAAATTGAAATTACGAATAAAAATAGCAAAATACATATGGTAGAGATTTTCTTCCGTTCCAGTCAATCTTCTGAATGTATGAGTTGCAGTTCATTTGATTATCTCATTCGTGCCTTTTGTTGCAGGAAATTTAGGTTTGTTATTTGCAGAAGAAAAGAATGAGGTTGGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGGTAAGGACGCAGGTTGCGAACTTCCACGATTTGTATGCTTTGTTCTGCACATTGCTTGTATGTTCTTACTTGCTAATGCTTACGGATTGACGAGACTACATCGTTCTGTTCTATTTTGGCTTGTTTGTGATGCATATTTTAGGCTATAGAAATAGATAGTTGTTCTTGTCTTGCTGTGCTTTTAAATTAGTAATGGTGGGTGGGAGTCCCATGTTCCTATTTCCTAATGTGATTTTATTCTGCAGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGTAAACTTTCTTCATTTATTTGTGGAGCAAATTGGATTTTATAAGTACAAACTTCCATTGTCTTCGTCCTTTTAATTGTTGTTTCATTTGTATTATCCAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGACCACATAAATATGACAGAAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAGTCGAGACATATTGCACGCAGGTTGAAAATTTTTTCCATTCCCATTTGTTACATGCCTATATATTTTGCAAATACTATTTCAGTTGTTAACTCAGGATCGTTCACATTTGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCCGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCAACACAATCAGAGCAAGATCGTATGGAAGAATGAGTTTAATCAATCTTATATCACTATATCAAATATTTACGTAGTAGTTACGTTTTAACATATCTAGAACTGTCACAGTTCTTGTGCAGTGGTAGATTATCTTTGTTTGTCCTTGCGCAAGCATGGTTATCATGTACAATTTCATTTTGATAATGTGTTTTTTTGACTTTAATAGACAAACTTCTAAAAAATTTTATTGAATCATATCCAACCGGTTTTTGCAGTTTTGTTTGAGGCTA

mRNA sequence

ATATTTATTATTAATGTAGTAAATACTAAATAGAAAGTTAGGTCACGCCGCCTCTATCATCTCTTGGTCACTCTCTCGTCTCGGCCTCTCGTCTGACGCCGTCGCCGGCGTTCAATCGTCTCTCCTTCTCAGTCTCCGGCGTTCATCGCCGATCGTCTCTACTTCTCAGAAGTCTCCGATCATTCGCTGGCGCTTGGCTCTCCCTAACCGTTGCTTTGCTTTGTTGTGTTGCCGTTGGCTACGATACTTTTTGCACTTCAATCGGATTATTTTTCTAATAACTTTTGCTTAAGAAATTTAGGTTTGTTATTTGCAGAAGAAAAGAATGAGGTTGGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGACCACATAAATATGACAGAAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAGTCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCCGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCAACACAATCAGAGCAAGATCGTATGGAAGAATGAGTTTAATCAATCTTATATCACTATATCAAATATTTACGTAGTAGTTACGTTTTAACATATCTAGAACTGTCACAGTTCTTGTGCAGTGGTAGATTATCTTTGTTTGTCCTTGCGCAAGCATGGTTATCATGTACAATTTCATTTTGATAATGTGTTTTTTTGACTTTAATAGACAAACTTCTAAAAAATTTTATTGAATCATATCCAACCGGTTTTTGCAGTTTTGTTTGAGGCTA

Coding sequence (CDS)

ATGAGGTTGGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGACCACATAAATATGACAGAAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAGTCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCCGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGCTCAAAGTCAAAGTGGTACCAACACAATCAGAGCAAGATCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE*
BLAST of MELO3C019857 vs. Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 9.2e-57
Identity = 111/168 (66.07%), Postives = 126/168 (75.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

BLAST of MELO3C019857 vs. Swiss-Prot
Match: RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-44
Identity = 77/142 (54.23%), Postives = 105/142 (73.94%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS P+YPGHG+ FVRND   FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K+MT D T EFE+ R+RP KYDR +  +T+ A+ ++ KI+  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAKKELDQSISLVKAPSVLKE 143
           ++  KE++Q++SL++ PS L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

BLAST of MELO3C019857 vs. Swiss-Prot
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-41
Identity = 83/169 (49.11%), Postives = 116/169 (68.64%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   MEE
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMEE 161

BLAST of MELO3C019857 vs. Swiss-Prot
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 82/169 (48.52%), Postives = 116/169 (68.64%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMED 161

BLAST of MELO3C019857 vs. Swiss-Prot
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-40
Identity = 72/137 (52.55%), Postives = 102/137 (74.45%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R +  K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 REAKKELDQSISLVKAP 138
            +  KE+ Q+I L++AP
Sbjct: 121 VQDVKEVKQNIHLIRAP 137

BLAST of MELO3C019857 vs. TrEMBL
Match: A0A0A0LQI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385010 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.6e-93
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

BLAST of MELO3C019857 vs. TrEMBL
Match: A0A0A0LIW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G855990 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.6e-93
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

BLAST of MELO3C019857 vs. TrEMBL
Match: K4D2A8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.8e-73
Identity = 137/167 (82.04%), Postives = 152/167 (91.02%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS +YPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRNVTE+TLKAIKKIDKIR+DRE RHIA+R +G KAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKIRVDREERHIAKRMKGNKAKEQ 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REA KEL+QSI +VKAPSVL ++PSLTLP  KVKV+  QSE++RMEE
Sbjct: 121 REATKELEQSIHMVKAPSVLFKEPSLTLP-TKVKVLQKQSEENRMEE 166

BLAST of MELO3C019857 vs. TrEMBL
Match: A0A0V0HJF4_SOLCH (Putative ribosome biogenesis protein RLP24-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.9e-73
Identity = 137/167 (82.04%), Postives = 151/167 (90.42%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS +YPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRNVTE+TLKAIKKIDKIR+DRE RHI +R +GKKAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKIRVDREERHITKRMKGKKAKEQ 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REA KEL+QSI +VKAPSVL ++PSLTLP  KVKV   QSE++RMEE
Sbjct: 121 REATKELEQSIHMVKAPSVLVKEPSLTLP-TKVKVSQKQSEENRMEE 166

BLAST of MELO3C019857 vs. TrEMBL
Match: A0A068V7P7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019297001 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.4e-73
Identity = 132/167 (79.04%), Postives = 151/167 (90.42%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS +YPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRNVTE+TLKAIKKIDK+R+DRE+RH   R +GKK  E 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKVRVDREARHHTMRMRGKKTMEQ 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REA KEL+QSI +VKAP++L+++PSLTLPK+KVKV   QSE++RMEE
Sbjct: 121 REAAKELEQSIHMVKAPALLQQEPSLTLPKIKVKVSQQQSEENRMEE 167

BLAST of MELO3C019857 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 221.1 bits (562), Expect = 5.2e-58
Identity = 111/168 (66.07%), Postives = 126/168 (75.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

BLAST of MELO3C019857 vs. TAIR10
Match: AT3G53020.1 (AT3G53020.1 Ribosomal protein L24e family protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.4e-16
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

BLAST of MELO3C019857 vs. TAIR10
Match: AT2G36620.1 (AT2G36620.1 ribosomal protein L24)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

BLAST of MELO3C019857 vs. NCBI nr
Match: gi|659113416|ref|XP_008456562.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 2.7e-93
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

BLAST of MELO3C019857 vs. NCBI nr
Match: gi|700207913|gb|KGN63032.1| (hypothetical protein Csa_2G385010 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 8.0e-93
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

BLAST of MELO3C019857 vs. NCBI nr
Match: gi|778672743|ref|XP_011649861.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 8.0e-93
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

BLAST of MELO3C019857 vs. NCBI nr
Match: gi|659133122|ref|XP_008466567.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 347.1 bits (889), Expect = 1.8e-92
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+P+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

BLAST of MELO3C019857 vs. NCBI nr
Match: gi|808175917|ref|NP_001294920.1| (ribosome biogenesis protein RLP24-like isoform a [Solanum lycopersicum])

HSP 1 Score: 282.3 bits (721), Expect = 5.4e-73
Identity = 137/167 (82.04%), Postives = 152/167 (91.02%), Query Frame = 1

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS +YPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRNVTE+TLKAIKKIDKIR+DRE RHIA+R +G KAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKIRVDREERHIAKRMKGNKAKEQ 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 168
           REA KEL+QSI +VKAPSVL ++PSLTLP  KVKV+  QSE++RMEE
Sbjct: 121 REATKELEQSIHMVKAPSVLFKEPSLTLP-TKVKVLQKQSEENRMEE 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RLP24_ARATH9.2e-5766.07Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 ... [more]
RLP24_DICDI4.0e-4454.23Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 ... [more]
RLP24_MOUSE5.4e-4149.11Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1[more]
RLP24_HUMAN1.2e-4048.52Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1[more]
RLP24_BOVIN1.6e-4052.55Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LQI2_CUCSA5.6e-9399.40Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385010 PE=4 SV=1[more]
A0A0A0LIW9_CUCSA5.6e-9399.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G855990 PE=4 SV=1[more]
K4D2A8_SOLLC3.8e-7382.04Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0V0HJF4_SOLCH4.9e-7382.04Putative ribosome biogenesis protein RLP24-like OS=Solanum chacoense PE=4 SV=1[more]
A0A068V7P7_COFCA8.4e-7379.04Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019297001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44860.15.2e-5866.07 Ribosomal protein L24e family protein[more]
AT3G53020.16.4e-1633.86 Ribosomal protein L24e family protein[more]
AT2G36620.11.1e-1533.86 ribosomal protein L24[more]
Match NameE-valueIdentityDescription
gi|659113416|ref|XP_008456562.1|2.7e-93100.00PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
gi|700207913|gb|KGN63032.1|8.0e-9399.40hypothetical protein Csa_2G385010 [Cucumis sativus][more]
gi|778672743|ref|XP_011649861.1|8.0e-9399.40PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus][more]
gi|659133122|ref|XP_008466567.1|1.8e-9298.80PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
gi|808175917|ref|NP_001294920.1|5.4e-7382.04ribosome biogenesis protein RLP24-like isoform a [Solanum lycopersicum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000988Ribosomal_L24e-rel
IPR011017TRASH_dom
IPR023441Ribosomal protein L24e domain
IPR023442Ribosomal_L24e_CS
IPR024546Ribosome biogenesis protein RLP24
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0008150 biological_process
biological_process GO:0001510 RNA methylation
biological_process GO:1902626 assembly of large subunit precursor of preribosome
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44511melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019857T1MELO3C019857T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44511MU44511transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 2..167
score: 9.2
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
score: 8.7
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
score: 5.7
IPR023441Ribosomal protein L24e domainGENE3DG3DSA:2.30.170.20coord: 1..66
score: 1.1
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 8..25
scor
IPR024546Ribosome biogenesis protein RLP24PANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 2..167
score: 9.2
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
score: 5.99