CsaV3_2G017480.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G017480.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein
Location	chr2 : 14567747 .. 14569266 (+)
Sequence length	930

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTTTTTTGCCTTCTTCAATCAATTAAAATAAATTTCCTTTTTCTCTCTTTCTGTTCTCCTTCTGTTTGGTATTGCGAAACTCGAAGATCGGATCCAGCGCTTTCTCTCCAAACCCTAATACCCAAAAACAAAACAGAAAAAAATTAAACATATTCTCCCAATCTCTTCCTTCTTCTAATTTCTTCATTCATGGACTTCAATCGCTCCAACACAATTTAACGCCGTCCGATTCATCCCAAAAGGTCAGTTTCCTCCCCTTTTTCCCTTCCATCTTTTTACGCCATTTTCATTCTTCTAATTTGCTTGGATTCTTGATTCTTCTTCTGTTGGTTCTTGATGAAAAATGTTACATATATATGTATAGAATTTTGTTTTTGCAGTTGGCTTTTCTTTTTAAAATATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAGTTTTATTTTCTCTTAATTTTAGGGATTGATTTTGTTTTGTTTTTCTTTTTTTAATGATGATTATGACAAGACTGTTTCATGGATGGGATTAGTTTTAAATGGGAGGGAGTATTAGCATGCACAGCAGGAAAGATGCTTTTTGCATTTATGAATTATCTTTTTTTTTTTTTCATTTTGTTTTAATGTT

mRNA sequence

ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAG

Coding sequence (CDS)

ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAG

Protein sequence

MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIAPSPSPSPSVPGSSQQMIIRDSAVTTPAHHHHHHLQQQQQQLFEAQQLAAAVAAREQEMFKAYEHKQSQQQQRQQELLSFNNNNVNNQMGASNLTLGTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQPQQTQQQLEQQHHHHHQSHKPESTTHADDGRINNNNINIGPSC

Homology

[Close]

BLAST of CsaV3_2G017480.1 vs. NCBI nr
Match: XP_004148465.1 (PREDICTED: LOB domain-containing protein 36-like [Cucumis sativus] >KGN62069.1 hypothetical protein Csa_2G295940 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 3.1e-94
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIAPSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           QPQTTPSPYNHHLSPMMGIAPSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QPQTTPSPYNHHLSPMMGIAPSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFVD 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFVD
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFVD 240

Query: 241 NSYQQIQQHDHQNSSSHPLQVQLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           NSYQQIQQHDHQNSSSHPLQVQLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 NSYQQIQQHDHQNSSSHPLQVQLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XNINIGPSC 310
           XNINIGPSC
Sbjct: 301 XNINIGPSC 309

[Close]

BLAST of CsaV3_2G017480.1 vs. NCBI nr
Match: XP_008457883.1 (PREDICTED: LOB domain-containing protein 36-like [Cucumis melo] >XP_008457884.1 PREDICTED: LOB domain-containing protein 36-like [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 4.3e-88
Identity = 261/268 (97.39%), Postives = 261/268 (97.39%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGI-APSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           QPQTTPSPYNHHLSPMMGI  PS XXXX VPGS XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QPQTTPSPYNHHLSPMMGIVGPSPXXXXSVPGS-XXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFV 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASNLTLGTFV
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASNLTLGTFV 240

Query: 241 DNSYQQIQQHDHQNSSSHPLQVQLFLQP 268
           DNSYQQIQQHDHQNSSSHPLQVQLFLQP
Sbjct: 241 DNSYQQIQQHDHQNSSSHPLQVQLFLQP 267

[Close]

BLAST of CsaV3_2G017480.1 vs. NCBI nr
Match: XP_023533097.1 (LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65
Identity = 208/272 (76.47%), Postives = 215/272 (79.04%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNV KLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKEL++YIG QAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELSTYIGSQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGI-----APSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXX 180
           QP   P   NHH+ PM+GI     APS      +  +     XXXXXXXXXXXXXXXXXX
Sbjct: 121 QP---PIAGNHHMFPMLGIPNSAAAPSSSHQMLIRDT--PQQXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTL 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  SNLTL
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMRFDGFDPAGNQINSSGSNLTL 240

Query: 241 GTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQP 268
           GTFVDNSYQ           + PLQVQLFLQP
Sbjct: 241 GTFVDNSYQ---------IEAQPLQVQLFLQP 258

[Close]

BLAST of CsaV3_2G017480.1 vs. NCBI nr
Match: XP_022927995.1 (LOB domain-containing protein 36-like [Cucurbita moschata])

HSP 1 Score: 251.5 bits (641), Expect = 3.7e-63
Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNA+QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQ+DLYNAKKELASY+GPQAM+PIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPIL 120

Query: 121 QPQ------------TTPS-----PYNHHLSPMMGI 140
           QP             T+PS     PYN  +SPM GI
Sbjct: 121 QPSTAIMTTNPQGPVTSPSSSVLLPYN--MSPMFGI 154

[Close]

BLAST of CsaV3_2G017480.1 vs. NCBI nr
Match: XP_022971742.1 (LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB domain-containing protein 36-like [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 3.7e-63
Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNA+QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQ+DLYNAKKELASY+GPQAM+PIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPIL 120

Query: 121 QPQ------------TTPS-----PYNHHLSPMMGI 140
           QP             T+PS     PYN  +SPM GI
Sbjct: 121 QPSTAIMTSNPQGPVTSPSSSVLLPYN--MSPMFGI 154

[Close]

BLAST of CsaV3_2G017480.1 vs. TAIR10
Match: AT5G66870.1 (ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-57
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           M+SS+SPCAACKFLRRKCTQECVFAPYFPPDQPQKFA VHKVFGASNVAKLLNEL + QR
Sbjct: 1   MASSSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSL YEAE RLRDPVYGCVGLIS+LQH+LKQ+  DL NAKKELA+Y+GPQAMLPIL
Sbjct: 61  EDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL 120

Query: 121 QPQTTPSP 129
           QP     P
Sbjct: 121 QPHFMSLP 128

[Close]

BLAST of CsaV3_2G017480.1 vs. TAIR10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-48
Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQRE 61
           SS+NSPCAACKFLRRKC  ECVFAPYFPPDQPQKFANVHKVFGASNV KLLNEL+ +QRE
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query: 62  DAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY 111
           DAVNSLAYEA+ RLRDPVYGCVG+IS+LQH+L+Q+Q DL  AK EL+ Y
Sbjct: 64  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of CsaV3_2G017480.1 vs. TAIR10
Match: AT2G23660.1 (LOB domain-containing protein 10)

HSP 1 Score: 175.6 bits (444), Expect = 4.6e-44
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           +++PCAACK LRRKCTQECVFAPYFPP  PQKF  VH+VFGASNV K+LN+L   QRED 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAML--PILQ 123
           VNSL YEAE R+RDP+YGCVGLIS LQ  LK++Q DL  AK+EL  Y+GP A++  P L 
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVIPPPYLP 121

Query: 124 PQTTPSPYNHHLSPMMGIAP 142
           P     P N  +S M G+ P
Sbjct: 122 PIGNNPPPNFMMS-MEGMPP 140

[Close]

BLAST of CsaV3_2G017480.1 vs. TAIR10
Match: AT3G27650.1 (LOB domain-containing protein 25)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-40
Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           +NSPCAACKFLRRKCT +CVFAPYFPP++P KFANVH++FGASNV+K+L+E+   QREDA
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIG 113
           VNSLAYEAE RL+DPVYGCVG ISVLQ ++ ++Q +L     +L  Y G
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAG 144

[Close]

BLAST of CsaV3_2G017480.1 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-40
Identity = 87/157 (55.41%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQRE 61
           +S NSPCAACKFLRRKC   C+FAPYFPP++P KFANVHK+FGASNV KLLNEL   QRE
Sbjct: 6   NSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQRE 65

Query: 62  DAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY--IGPQAMLP- 121
           DAVNSLAYEAE R+RDPVYGCVG IS LQ ++ ++Q +L  A  +LA Y      A  P 
Sbjct: 66  DAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPG 125

Query: 122 -----ILQPQTTPSPYNHHLSPMMGIAPSXXXXXXVP 151
                + QPQ  PS     L+P+  ++ +      +P
Sbjct: 126 NVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMP 162

[Close]

BLAST of CsaV3_2G017480.1 vs. Swiss-Prot
Match: sp|Q9FKZ3|LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.0e-56
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           M+SS+SPCAACKFLRRKCTQECVFAPYFPPDQPQKFA VHKVFGASNVAKLLNEL + QR
Sbjct: 1   MASSSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSL YEAE RLRDPVYGCVGLIS+LQH+LKQ+  DL NAKKELA+Y+GPQAMLPIL
Sbjct: 61  EDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL 120

Query: 121 QPQTTPSP 129
           QP     P
Sbjct: 121 QPHFMSLP 128

[Close]

BLAST of CsaV3_2G017480.1 vs. Swiss-Prot
Match: sp|O04479|AS2_ARATH (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.6e-47
Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQRE 61
           SS+NSPCAACKFLRRKC  ECVFAPYFPPDQPQKFANVHKVFGASNV KLLNEL+ +QRE
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query: 62  DAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY 111
           DAVNSLAYEA+ RLRDPVYGCVG+IS+LQH+L+Q+Q DL  AK EL+ Y
Sbjct: 64  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of CsaV3_2G017480.1 vs. Swiss-Prot
Match: sp|Q32SG3|LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.2e-43
Identity = 86/125 (68.80%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           + SPCAACKFLRRKC  +CVFAPYFPPD PQKF +VH+VFGASNV KLLNEL+  QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY------------I 117
           VNSLAYEA+ RLRDPVYGCVG+IS+LQH L+Q+Q DL  AK EL+ Y             
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASXSTAPT 149

[Close]

BLAST of CsaV3_2G017480.1 vs. Swiss-Prot
Match: sp|O64836|LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.3e-43
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           +++PCAACK LRRKCTQECVFAPYFPP  PQKF  VH+VFGASNV K+LN+L   QRED 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAML--PILQ 123
           VNSL YEAE R+RDP+YGCVGLIS LQ  LK++Q DL  AK+EL  Y+GP A++  P L 
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVIPPPYLP 121

Query: 124 PQTTPSPYNHHLSPMMGIAP 142
           P     P N  +S M G+ P
Sbjct: 122 PIGNNPPPNFMMS-MEGMPP 140

[Close]

BLAST of CsaV3_2G017480.1 vs. Swiss-Prot
Match: sp|A1YKY7|IAL1_MAIZE (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-42
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           + SPCAACKFLRRKC  +CVFAPYFPPD PQKF  VH+VFGASNV KL+NE++  QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDA 89

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY------------I 117
           +NSLAYEA+ R+RDPVYGCVG+IS+LQH L+Q+Q DL  AK EL+ Y             
Sbjct: 90  MNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASXSTAPT 149

[Close]

BLAST of CsaV3_2G017480.1 vs. TrEMBL
Match: tr|A0A0A0LM25|A0A0A0LM25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295940 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.0e-94
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIAPSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           QPQTTPSPYNHHLSPMMGIAPSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QPQTTPSPYNHHLSPMMGIAPSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFVD 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFVD
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFVD 240

Query: 241 NSYQQIQQHDHQNSSSHPLQVQLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           NSYQQIQQHDHQNSSSHPLQVQLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 NSYQQIQQHDHQNSSSHPLQVQLFLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XNINIGPSC 310
           XNINIGPSC
Sbjct: 301 XNINIGPSC 309

[Close]

BLAST of CsaV3_2G017480.1 vs. TrEMBL
Match: tr|A0A1S3C635|A0A1S3C635_CUCME (LOB domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LOC103497461 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.8e-88
Identity = 261/268 (97.39%), Postives = 261/268 (97.39%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGI-APSXXXXXXVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           QPQTTPSPYNHHLSPMMGI  PS XXXX VPGS XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QPQTTPSPYNHHLSPMMGIVGPSPXXXXSVPGS-XXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGASNLTLGTFV 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASNLTLGTFV
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASNLTLGTFV 240

Query: 241 DNSYQQIQQHDHQNSSSHPLQVQLFLQP 268
           DNSYQQIQQHDHQNSSSHPLQVQLFLQP
Sbjct: 241 DNSYQQIQQHDHQNSSSHPLQVQLFLQP 267

[Close]

BLAST of CsaV3_2G017480.1 vs. TrEMBL
Match: tr|A0A2N9FMU2|A0A2N9FMU2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19988 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.0e-61
Identity = 121/152 (79.61%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAE RLRDPVYGCVGLIS+LQH+LKQ+QTDL+NAKKELA+YIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQTDLFNAKKELATYIGPQAMLPIL 120

Query: 121 Q-------------PQTTPSPYNHHLSPMMGI 140
           Q             P ++ +   +++SPM+GI
Sbjct: 121 QAPAFIPQQQHQGNPSSSAAVMPYNVSPMLGI 152

[Close]

BLAST of CsaV3_2G017480.1 vs. TrEMBL
Match: tr|A0A2P4MRQ3|A0A2P4MRQ3_QUESU (Lob domain-containing protein 36 OS=Quercus suber OX=58331 GN=CFP56_35987 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.6e-61
Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNA QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAE RLRDPVYGCVGLIS+LQH+LKQ+QTDLYNAKKELA+YIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQTDLYNAKKELATYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHH 133
           QP     P  HH
Sbjct: 121 QPPGY-IPQQHH 131

[Close]

BLAST of CsaV3_2G017480.1 vs. TrEMBL
Match: tr|A0A0B0PS92|A0A0B0PS92_GOSAR (LOB domain-containing 36-like protein OS=Gossypium arboreum OX=29729 GN=F383_00956 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPD PQKFANVHKVFGASNVAKLLNELNA+QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELNASQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAE RLRDPVYGCVGLIS+LQHKLKQMQ DL NAKKELA+YIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHKLKQMQHDLNNAKKELATYIGPQAMLPIL 120

Query: 121 QP---------QTTPSPYNHHLSPMMGI 140
           QP           + +   H++ PMMGI
Sbjct: 121 QPHVFLQQHVGNASSAVMQHNMMPMMGI 148

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148465.1	3.1e-94	100.00	PREDICTED: LOB domain-containing protein 36-like [Cucumis sativus] >KGN62069.1 h...	[more]
XP_008457883.1	4.3e-88	97.39	PREDICTED: LOB domain-containing protein 36-like [Cucumis melo] >XP_008457884.1 ...	[more]
XP_023533097.1	1.8e-65	76.47	LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo]	[more]
XP_022927995.1	3.7e-63	82.69	LOB domain-containing protein 36-like [Cucurbita moschata]	[more]
XP_022971742.1	3.7e-63	82.69	LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB dom...	[more]

BLAST of CsaV3_2G017480.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66870.1	1.6e-57	83.59	ASYMMETRIC LEAVES 2-like 1	[more]
AT1G65620.1	3.1e-48	81.65	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G23660.1	4.6e-44	62.86	LOB domain-containing protein 10	[more]
AT3G27650.1	1.8e-40	67.89	LOB domain-containing protein 25	[more]
AT5G63090.2	1.8e-40	55.41	Lateral organ boundaries (LOB) domain family protein	[more]

BLAST of CsaV3_2G017480.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FKZ3\|LBD36_ARATH	3.0e-56	83.59	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]
sp\|O04479\|AS2_ARATH	5.6e-47	81.65	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
sp\|Q32SG3\|LBD6_MAIZE	2.2e-43	68.80	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
sp\|O64836\|LBD10_ARATH	8.3e-43	62.86	LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 S...	[more]
sp\|A1YKY7\|IAL1_MAIZE	2.4e-42	65.60	Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CsaV3_2G017480.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM25\|A0A0A0LM25_CUCSA	2.0e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295940 PE=4 SV=1	[more]
tr\|A0A1S3C635\|A0A1S3C635_CUCME	2.8e-88	97.39	LOB domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LOC103497461 PE...	[more]
tr\|A0A2N9FMU2\|A0A2N9FMU2_FAGSY	5.0e-61	79.61	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19988 PE=4 SV=1	[more]
tr\|A0A2P4MRQ3\|A0A2P4MRQ3_QUESU	8.6e-61	90.15	Lob domain-containing protein 36 OS=Quercus suber OX=58331 GN=CFP56_35987 PE=4 S...	[more]
tr\|A0A0B0PS92\|A0A0B0PS92_GOSAR	1.5e-60	81.76	LOB domain-containing 36-like protein OS=Gossypium arboreum OX=29729 GN=F383_009...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G017480	CsaV3_2G017480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G017480.1.exon1	CsaV3_2G017480.1.exon1	exon
CsaV3_2G017480.1.exon2	CsaV3_2G017480.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G017480.1.cds2	CsaV3_2G017480.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G017480.1	CsaV3_2G017480.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..309
None	No IPR available	PANTHER	PTHR31301:SF22	SUBFAMILY NOT NAMED	coord: 1..283
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..283
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 6.7E-42 score: 141.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 26.729