CsaV3_2G017480 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTCTTTTTTTGCCTTCTTCAATCAATTAAAATAAATTTCCTTTTTCTCTCTTTCTGTTCTCCTTCTGTTTGGTATTGCGAAACTCGAAGATCGGATCCAGCGCTTTCTCTCCAAACCCTAATACCCAAAAACAAAACAGAAAAAAATTAAACATATTCTCCCAATCTCTTCCTTCTTCTAATTTCTTCATTCATGGACTTCAATCGCTCCAACACAATTTAACGCCGTCCGATTCATCCCAAAAGGTCAGTTTCCTCCCCTTTTTCCCTTCCATCTTTTTACGCCATTTTCATTCTTCTAATTTGCTTGGATTCTTGATTCTTCTTCTGTTGGTTCTTGATGAAAAATGTTACATATATATGTATAGAATTTTGTTTTTGCAGTTGGCTTTTCTTTTTAAAATATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAGTTTTATTTTCTCTTAATTTTAGGGATTGATTTTGTTTTGTTTTTCTTTTTTTAATGATGATTATGACAAGACTGTTTCATGGATGGGATTAGTTTTAAATGGGAGGGAGTATTAGCATGCACAGCAGGAAAGATGCTTTTTGCATTTATGAATTATCTTTTTTTTTTTTTCATTTTGTTTTAATGTT ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAG ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAG MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIAPSPSPSPSVPGSSQQMIIRDSAVTTPAHHHHHHLQQQQQQLFEAQQLAAAVAAREQEMFKAYEHKQSQQQQRQQELLSFNNNNVNNQMGASNLTLGTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQPQQTQQQLEQQHHHHHQSHKPESTTHADDGRINNNNINIGPSC
BLAST of CsaV3_2G017480 vs. NCBI nr
Match: XP_004148465.1 (PREDICTED: LOB domain-containing protein 36-like [Cucumis sativus] >KGN62069.1 hypothetical protein Csa_2G295940 [Cucumis sativus]) HSP 1 Score: 354.8 bits (909), Expect = 3.1e-94 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. NCBI nr
Match: XP_008457883.1 (PREDICTED: LOB domain-containing protein 36-like [Cucumis melo] >XP_008457884.1 PREDICTED: LOB domain-containing protein 36-like [Cucumis melo]) HSP 1 Score: 334.3 bits (856), Expect = 4.3e-88 Identity = 261/268 (97.39%), Postives = 261/268 (97.39%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. NCBI nr
Match: XP_023533097.1 (LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65 Identity = 208/272 (76.47%), Postives = 215/272 (79.04%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. NCBI nr
Match: XP_022927995.1 (LOB domain-containing protein 36-like [Cucurbita moschata]) HSP 1 Score: 251.5 bits (641), Expect = 3.7e-63 Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. NCBI nr
Match: XP_022971742.1 (LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB domain-containing protein 36-like [Cucurbita maxima]) HSP 1 Score: 251.5 bits (641), Expect = 3.7e-63 Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TAIR10
Match: AT5G66870.1 (ASYMMETRIC LEAVES 2-like 1) HSP 1 Score: 220.3 bits (560), Expect = 1.6e-57 Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TAIR10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 189.5 bits (480), Expect = 3.1e-48 Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TAIR10
Match: AT2G23660.1 (LOB domain-containing protein 10) HSP 1 Score: 175.6 bits (444), Expect = 4.6e-44 Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TAIR10
Match: AT3G27650.1 (LOB domain-containing protein 25) HSP 1 Score: 163.7 bits (413), Expect = 1.8e-40 Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 163.7 bits (413), Expect = 1.8e-40 Identity = 87/157 (55.41%), Postives = 106/157 (67.52%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. Swiss-Prot
Match: sp|Q9FKZ3|LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 3.0e-56 Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. Swiss-Prot
Match: sp|O04479|AS2_ARATH (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 5.6e-47 Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. Swiss-Prot
Match: sp|Q32SG3|LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 2.2e-43 Identity = 86/125 (68.80%), Postives = 97/125 (77.60%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. Swiss-Prot
Match: sp|O64836|LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 8.3e-43 Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. Swiss-Prot
Match: sp|A1YKY7|IAL1_MAIZE (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 2.4e-42 Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TrEMBL
Match: tr|A0A0A0LM25|A0A0A0LM25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295940 PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 2.0e-94 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TrEMBL
Match: tr|A0A1S3C635|A0A1S3C635_CUCME (LOB domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LOC103497461 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 2.8e-88 Identity = 261/268 (97.39%), Postives = 261/268 (97.39%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TrEMBL
Match: tr|A0A2N9FMU2|A0A2N9FMU2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19988 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 5.0e-61 Identity = 121/152 (79.61%), Postives = 133/152 (87.50%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TrEMBL
Match: tr|A0A2P4MRQ3|A0A2P4MRQ3_QUESU (Lob domain-containing protein 36 OS=Quercus suber OX=58331 GN=CFP56_35987 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 8.6e-61 Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0
BLAST of CsaV3_2G017480 vs. TrEMBL
Match: tr|A0A0B0PS92|A0A0B0PS92_GOSAR (LOB domain-containing 36-like protein OS=Gossypium arboreum OX=29729 GN=F383_00956 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60 Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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