CsaV3_2G010220.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010220.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 7015563 .. 7015712 (+)
Sequence length	150

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAACTCAATCGAACGCGCCATTTGTTTGAAGATATATCGTGCCTGAAACAGAAGATTGATTTGAGAATGGTGTTGTACGCCAAGAAGATCAGATTAGAAAAGCTTACAGTAAGCCTGGTCATCAAAACATTCAAAAGAGATGCATGA

mRNA sequence

GTTGAACTCAATCGAACGCGCCATTTGTTTGAAGATATATCGTGCCTGAAACAGAAGATTGATTTGAGAATGGTGTTGTACGCCAAGAAGATCAGATTAGAAAAGCTTACAGTAAGCCTGGTCATCAAAACATTCAAAAGAGATGCATGA

Coding sequence (CDS)

GTTGAACTCAATCGAACGCGCCATTTGTTTGAAGATATATCGTGCCTGAAACAGAAGATTGATTTGAGAATGGTGTTGTACGCCAAGAAGATCAGATTAGAAAAGCTTACAGTAAGCCTGGTCATCAAAACATTCAAAAGAGATGCATGA

Protein sequence

VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA

Homology

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BLAST of CsaV3_2G010220.1 vs. NCBI nr
Match: KGN61324.1 (hypothetical protein Csa_2G083710 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 50
           VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA
Sbjct: 224 VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 272

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BLAST of CsaV3_2G010220.1 vs. NCBI nr
Match: XP_011650137.1 (PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSL 41
           VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSL
Sbjct: 228 VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSL 267

[Close]

BLAST of CsaV3_2G010220.1 vs. NCBI nr
Match: XP_008447319.1 (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 5.2e-04
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   VELNRTRHLFEDISCLKQK-IDLRMVLYAKKIRLEKLTV 39
           VELN+T HLF  ISCL+QK ID+R++LY KKIRLE LTV
Sbjct: 255 VELNQTCHLFAYISCLRQKIIDMRLMLYPKKIRLENLTV 293

[Close]

BLAST of CsaV3_2G010220.1 vs. TrEMBL
Match: tr|A0A0A0LJR2|A0A0A0LJR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083710 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 50
           VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA
Sbjct: 224 VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 272

[Close]

BLAST of CsaV3_2G010220.1 vs. TrEMBL
Match: tr|A0A1S3BH46|A0A1S3BH46_CUCME (uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-04
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   VELNRTRHLFEDISCLKQK-IDLRMVLYAKKIRLEKLTV 39
           VELN+T HLF  ISCL+QK ID+R++LY KKIRLE LTV
Sbjct: 255 VELNQTCHLFAYISCLRQKIIDMRLMLYPKKIRLENLTV 293

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61324.1	5.4e-17	100.00	hypothetical protein Csa_2G083710 [Cucumis sativus]	[more]
XP_011650137.1	6.8e-12	100.00	PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus]	[more]
XP_008447319.1	5.2e-04	71.79	PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo]	[more]

BLAST of CsaV3_2G010220.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010220.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJR2\|A0A0A0LJR2_CUCSA	3.6e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083710 PE=4 SV=1	[more]
tr\|A0A1S3BH46\|A0A1S3BH46_CUCME	3.5e-04	71.79	uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G010220	CsaV3_2G010220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G010220.1.exon1	CsaV3_2G010220.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G010220.1.cds1	CsaV3_2G010220.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G010220.1	CsaV3_2G010220.1-protein	polypeptide