CsaV3_2G010220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G010220
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 7015563 .. 7015712 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAACTCAATCGAACGCGCCATTTGTTTGAAGATATATCGTGCCTGAAACAGAAGATTGATTTGAGAATGGTGTTGTACGCCAAGAAGATCAGATTAGAAAAGCTTACAGTAAGCCTGGTCATCAAAACATTCAAAAGAGATGCATGA

mRNA sequence

GTTGAACTCAATCGAACGCGCCATTTGTTTGAAGATATATCGTGCCTGAAACAGAAGATTGATTTGAGAATGGTGTTGTACGCCAAGAAGATCAGATTAGAAAAGCTTACAGTAAGCCTGGTCATCAAAACATTCAAAAGAGATGCATGA

Coding sequence (CDS)

GTTGAACTCAATCGAACGCGCCATTTGTTTGAAGATATATCGTGCCTGAAACAGAAGATTGATTTGAGAATGGTGTTGTACGCCAAGAAGATCAGATTAGAAAAGCTTACAGTAAGCCTGGTCATCAAAACATTCAAAAGAGATGCATGA

Protein sequence

VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA
Homology
[Close]
BLAST of CsaV3_2G010220 vs. NCBI nr
Match: KGN61324.1 (hypothetical protein Csa_2G083710 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1   VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 50
           VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA
Sbjct: 224 VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 272

[Close]
BLAST of CsaV3_2G010220 vs. NCBI nr
Match: XP_011650137.1 (PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1   VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSL 41
           VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSL
Sbjct: 228 VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSL 267

[Close]
BLAST of CsaV3_2G010220 vs. NCBI nr
Match: XP_008447319.1 (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 5.2e-04
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1   VELNRTRHLFEDISCLKQK-IDLRMVLYAKKIRLEKLTV 39
           VELN+T HLF  ISCL+QK ID+R++LY KKIRLE LTV
Sbjct: 255 VELNQTCHLFAYISCLRQKIIDMRLMLYPKKIRLENLTV 293

[Close]
BLAST of CsaV3_2G010220 vs. TrEMBL
Match: tr|A0A0A0LJR2|A0A0A0LJR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083710 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1   VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 50
           VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA
Sbjct: 224 VELNRTRHLFEDISCLKQKIDLRMVLYAKKIRLEKLTVSLVIKTFKRDA 272

[Close]
BLAST of CsaV3_2G010220 vs. TrEMBL
Match: tr|A0A1S3BH46|A0A1S3BH46_CUCME (uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-04
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1   VELNRTRHLFEDISCLKQK-IDLRMVLYAKKIRLEKLTV 39
           VELN+T HLF  ISCL+QK ID+R++LY KKIRLE LTV
Sbjct: 255 VELNQTCHLFAYISCLRQKIIDMRLMLYPKKIRLENLTV 293

The following BLAST results are available for this feature:
BLAST of CsaV3_2G010220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61324.15.4e-17100.00hypothetical protein Csa_2G083710 [Cucumis sativus][more]
XP_011650137.16.8e-12100.00PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus][more]
XP_008447319.15.2e-0471.79PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo][more]
BLAST of CsaV3_2G010220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJR2|A0A0A0LJR2_CUCSA3.6e-17100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083710 PE=4 SV=1[more]
tr|A0A1S3BH46|A0A1S3BH46_CUCME3.5e-0471.79uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G010220.1CsaV3_2G010220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G010220Silver-seed gourdcarcucB0519
CsaV3_2G010220Cucumber (Gy14) v2cgybcucB064
CsaV3_2G010220Cucumber (Gy14) v1cgycucB426
CsaV3_2G010220Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G010220Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G010220Cucurbita moschata (Rifu)cmocucB0177
CsaV3_2G010220Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G010220Cucurbita moschata (Rifu)cmocucB0926
CsaV3_2G010220Cucurbita pepo (Zucchini)cpecucB0008
CsaV3_2G010220Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G010220Wild cucumber (PI 183967)cpicucB080
CsaV3_2G010220Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G010220Melon (DHL92) v3.5.1cucmeB138
CsaV3_2G010220Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G010220Melon (DHL92) v3.5.1cucmeB144
CsaV3_2G010220Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G010220Melon (DHL92) v3.6.1cucmedB131
CsaV3_2G010220Melon (DHL92) v3.6.1cucmedB137
CsaV3_2G010220Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G010220Watermelon (97103) v2cucwmbB114
CsaV3_2G010220Wax gourdcucwgoB146