CsaV3_2G005120.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGGTAGGAGAATCTTCTGAGCGAGCTATTCGATAAAGACTATATTATCTATTATGCATTTTTTTTTCTTCGAATGAGATTATAGCGAGAGATTTAATAGATATTTCCCCTTCATATCTTTAACACAATTCTTACTCGATGGTTCATATCCATAATCTTCAATCTCGCATTTCTGATCGAGAACGAAGATAATGAACCAGAATTATTACACTGTTATGAGTTTCTTGGAAAAATGCAAAACCATGAAGGAGTTGAAACAAATTCACAGTCTGATGATCACAACTTCAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGTAATACTTGCAACTGCAATCATGGACATGTATGCAAAATGTGGCAAGTTGGTGACTGCACGGAATCTGTTTGATAAGATGCCTCAAAGAAACTTGGTTGTTTGGAATTCAATGATCAGTGCTTATAGTCAATATGGTCGAGGAGCAGAGGCTTTGCGTCTTTTCGTTGACATGGAAATGGCTGGGTTTGTTCCTAATAAAGCAACGTTTTTGAGTGTGATAAGTGCTTGCACCCATATGGGGTTTCGATCAACAGGACGAAGTTTACATGCTCGTGCGTTGAGAGCAAGTTTCCACGAGTTTGTTGCCATTGGAACTGCTCTTATGGACATGTATGCCAAGGCTGGAGATGCAGATACTGCATTGAAGATCTTCAGCAAGTTGAGGAAGAAAGATGTAATGGCGTGGACGACGATGATATCAGGCTTAGCAATCCAAGGCAAAGGCAAAGAAGCGCTGAATGTGTTCAGAAGAATGGAAGAAGAAGCTGAAGTTGCTCCTGACCAAATCACCTACATAGCAGTTCTGTGGGCATGCAGCCATCTCGGGCTGGTCGAAGAAGGTCAGAAACAGTTTACCTCCATGACTGAGGTTTACGGTATTGAGCCTACCATGGAGCATTATGGCTGCATGATTGATCTTTTGAGTCGTGCAGGCCACTCCAAAGAGGCCGAGGAGCTCCTGATGAAAATGCCAACGCAGCCTAATGCAACAATCTTGAGTTCTATTCTGAATGGTTGTGAAATGTATGGAAATGTAGGTCTTGCCAACAGAGTGAAAAGTCACATAGTAGAGTTGGAGAATTCTAGTAGTGGTGTTTATGTACTTTTGTCAAATATTCATGCCAAAGCCTGTAATTGGCAGGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGWRGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVLGFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGKTLGNSFVEIKP
BLAST of CsaV3_2G005120.1 vs. NCBI nr
Match: XP_004139361.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus] >KGN60889.1 hypothetical protein Csa_2G021600 [Cucumis sativus]) HSP 1 Score: 456.4 bits (1173), Expect = 1.1e-124 Identity = 220/238 (92.44%), Postives = 222/238 (93.28%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. NCBI nr
Match: XP_008454853.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo] >AAO45757.1 selenium binding protein-like protein [Cucumis melo subsp. melo]) HSP 1 Score: 431.4 bits (1108), Expect = 3.8e-117 Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. NCBI nr
Match: XP_004139360.1 (PREDICTED: uncharacterized protein LOC101213268 [Cucumis sativus] >KGN60890.1 hypothetical protein Csa_2G021610 [Cucumis sativus]) HSP 1 Score: 424.9 bits (1091), Expect = 3.6e-115 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. NCBI nr
Match: XP_022946762.1 (putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita moschata]) HSP 1 Score: 403.7 bits (1036), Expect = 8.6e-109 Identity = 194/238 (81.51%), Postives = 207/238 (86.97%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. NCBI nr
Match: XP_023545826.1 (putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 401.7 bits (1031), Expect = 3.3e-108 Identity = 193/238 (81.09%), Postives = 206/238 (86.55%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TAIR10
Match: AT3G05240.1 (mitochondrial editing factor 19) HSP 1 Score: 247.7 bits (631), Expect = 1.4e-65 Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TAIR10
Match: AT3G12770.1 (mitochondrial editing factor 22) HSP 1 Score: 145.6 bits (366), Expect = 7.7e-35 Identity = 67/193 (34.72%), Postives = 111/193 (57.51%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 143.3 bits (360), Expect = 3.8e-34 Identity = 65/184 (35.33%), Postives = 118/184 (64.13%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TAIR10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 139.8 bits (351), Expect = 4.2e-33 Identity = 91/283 (32.16%), Postives = 139/283 (49.12%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TAIR10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 139.4 bits (350), Expect = 5.5e-33 Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. Swiss-Prot
Match: sp|Q9MA95|PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2) HSP 1 Score: 247.7 bits (631), Expect = 2.6e-64 Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. Swiss-Prot
Match: sp|Q9LTV8|PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 1.4e-33 Identity = 67/193 (34.72%), Postives = 111/193 (57.51%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 143.3 bits (360), Expect = 6.8e-33 Identity = 65/184 (35.33%), Postives = 118/184 (64.13%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. Swiss-Prot
Match: sp|P93005|PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 7.6e-32 Identity = 91/283 (32.16%), Postives = 139/283 (49.12%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. Swiss-Prot
Match: sp|Q9FM64|PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 9.9e-32 Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TrEMBL
Match: tr|A0A0A0LIL6|A0A0A0LIL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 7.4e-125 Identity = 220/238 (92.44%), Postives = 222/238 (93.28%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TrEMBL
Match: tr|A0A1S3C0R4|A0A1S3C0R4_CUCME (putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo OX=3656 GN=LOC103495159 PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117 Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TrEMBL
Match: tr|Q84KA5|Q84KA5_CUCME (Selenium binding protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117 Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TrEMBL
Match: tr|A0A0A0LFR0|A0A0A0LFR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021610 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CsaV3_2G005120.1 vs. TrEMBL
Match: tr|A0A1S3C0R6|A0A1S3C0R6_CUCME (uncharacterized protein LOC103495165 OS=Cucumis melo OX=3656 GN=LOC103495165 PE=4 SV=1) HSP 1 Score: 392.5 bits (1007), Expect = 1.3e-105 Identity = 202/220 (91.82%), Postives = 208/220 (94.55%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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