CsaV3_2G002600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G002600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 1137421 .. 1137723 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGGAAATTAAATGAGGCTGTTGGGTGTGAGAGACCAGTTCAAAAGCCTCTCCAGTCTCCACTCCAATGTAAGCTTCTTCTCTCTAAGTCCTTATTACACTTTAAAACGCGTCTCTGCCCAATTCCCACTTTGAAAAGTAAATACTTTGGAGGAGGACCCCTCATGAGCTGCCGTATATGTCAATTTGTGGTACCCATTGTTCTGAAGGACATTCGTGCTTTCTTGTCGATATTACTTTACTTTCCAGGTCTTCTGGGTGAGTCTGAAAAACAAAAGAGGTCTAGCTTACATGTTTAG

mRNA sequence

ATGTTTTGGAAATTAAATGAGGCTGTTGGGTGTGAGAGACCAGTTCAAAAGCCTCTCCAGTCTCCACTCCAATGTAAGCTTCTTCTCTCTAAGTCCTTATTACACTTTAAAACGCGTCTCTGCCCAATTCCCACTTTGAAAAGTAAATACTTTGGAGGAGGACCCCTCATGAGCTGCCGTATATGTCAATTTGTGGTACCCATTGTTCTGAAGGACATTCGTGCTTTCTTGTCGATATTACTTTACTTTCCAGGTCTTCTGGGTGAGTCTGAAAAACAAAAGAGGTCTAGCTTACATGTTTAG

Coding sequence (CDS)

ATGTTTTGGAAATTAAATGAGGCTGTTGGGTGTGAGAGACCAGTTCAAAAGCCTCTCCAGTCTCCACTCCAATGTAAGCTTCTTCTCTCTAAGTCCTTATTACACTTTAAAACGCGTCTCTGCCCAATTCCCACTTTGAAAAGTAAATACTTTGGAGGAGGACCCCTCATGAGCTGCCGTATATGTCAATTTGTGGTACCCATTGTTCTGAAGGACATTCGTGCTTTCTTGTCGATATTACTTTACTTTCCAGGTCTTCTGGGTGAGTCTGAAAAACAAAAGAGGTCTAGCTTACATGTTTAG

Protein sequence

MFWKLNEAVGCERPVQKPLQSPLQCKLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCRICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV
Homology
[Close]
BLAST of CsaV3_2G002600 vs. NCBI nr
Match: KGN60652.1 (hypothetical protein Csa_2G005980 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 5.2e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60
           MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR
Sbjct: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60

Query: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 101
           ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV
Sbjct: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 100

[Close]
BLAST of CsaV3_2G002600 vs. TrEMBL
Match: tr|A0A0A0LIW4|A0A0A0LIW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005980 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60
           MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR
Sbjct: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60

Query: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 101
           ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV
Sbjct: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 100

The following BLAST results are available for this feature:
BLAST of CsaV3_2G002600 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60652.15.2e-43100.00hypothetical protein Csa_2G005980 [Cucumis sativus][more]
BLAST of CsaV3_2G002600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIW4|A0A0A0LIW4_CUCSA3.4e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G002600.1CsaV3_2G002600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G002600Cucumber (Chinese Long) v3cuccucB006
CsaV3_2G002600Cucumber (Chinese Long) v3cuccucB065
CsaV3_2G002600Cucumber (Chinese Long) v3cuccucB104
CsaV3_2G002600Silver-seed gourdcarcucB0044
CsaV3_2G002600Silver-seed gourdcarcucB0045
CsaV3_2G002600Silver-seed gourdcarcucB0147
CsaV3_2G002600Silver-seed gourdcarcucB0605
CsaV3_2G002600Silver-seed gourdcarcucB1016
CsaV3_2G002600Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G002600Cucumber (Gy14) v2cgybcucB015
CsaV3_2G002600Cucumber (Gy14) v2cgybcucB064
CsaV3_2G002600Cucumber (Gy14) v2cgybcucB067
CsaV3_2G002600Cucumber (Gy14) v2cgybcucB324
CsaV3_2G002600Cucumber (Gy14) v1cgycucB156
CsaV3_2G002600Cucumber (Gy14) v1cgycucB248
CsaV3_2G002600Cucurbita maxima (Rimu)cmacucB0081
CsaV3_2G002600Cucurbita maxima (Rimu)cmacucB0129
CsaV3_2G002600Cucurbita maxima (Rimu)cmacucB0135
CsaV3_2G002600Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G002600Cucurbita maxima (Rimu)cmacucB0199
CsaV3_2G002600Cucurbita moschata (Rifu)cmocucB0070
CsaV3_2G002600Cucurbita moschata (Rifu)cmocucB0116
CsaV3_2G002600Cucurbita moschata (Rifu)cmocucB0120
CsaV3_2G002600Cucurbita moschata (Rifu)cmocucB0183
CsaV3_2G002600Cucurbita moschata (Rifu)cmocucB0185
CsaV3_2G002600Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G002600Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G002600Cucurbita pepo (Zucchini)cpecucB0450
CsaV3_2G002600Cucurbita pepo (Zucchini)cpecucB0826
CsaV3_2G002600Cucurbita pepo (Zucchini)cpecucB1012
CsaV3_2G002600Cucurbita pepo (Zucchini)cpecucB1015
CsaV3_2G002600Wild cucumber (PI 183967)cpicucB021
CsaV3_2G002600Wild cucumber (PI 183967)cpicucB080
CsaV3_2G002600Wild cucumber (PI 183967)cpicucB084
CsaV3_2G002600Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G002600Bottle gourd (USVL1VR-Ls)cuclsiB150
CsaV3_2G002600Bottle gourd (USVL1VR-Ls)cuclsiB126
CsaV3_2G002600Bottle gourd (USVL1VR-Ls)cuclsiB142
CsaV3_2G002600Bottle gourd (USVL1VR-Ls)cuclsiB154
CsaV3_2G002600Melon (DHL92) v3.5.1cucmeB108
CsaV3_2G002600Melon (DHL92) v3.5.1cucmeB116
CsaV3_2G002600Melon (DHL92) v3.5.1cucmeB126
CsaV3_2G002600Melon (DHL92) v3.5.1cucmeB142
CsaV3_2G002600Melon (DHL92) v3.6.1cucmedB110
CsaV3_2G002600Melon (DHL92) v3.6.1cucmedB120
CsaV3_2G002600Melon (DHL92) v3.6.1cucmedB135
CsaV3_2G002600Watermelon (Charleston Gray)cucwcgB107
CsaV3_2G002600Watermelon (Charleston Gray)cucwcgB112
CsaV3_2G002600Watermelon (Charleston Gray)cucwcgB156
CsaV3_2G002600Watermelon (Charleston Gray)cucwcgB172
CsaV3_2G002600Watermelon (Charleston Gray)cucwcgB175
CsaV3_2G002600Watermelon (97103) v1cucwmB117
CsaV3_2G002600Watermelon (97103) v1cucwmB123
CsaV3_2G002600Watermelon (97103) v1cucwmB174
CsaV3_2G002600Watermelon (97103) v1cucwmB180
CsaV3_2G002600Watermelon (97103) v2cucwmbB108
CsaV3_2G002600Watermelon (97103) v2cucwmbB143
CsaV3_2G002600Watermelon (97103) v2cucwmbB159
CsaV3_2G002600Watermelon (97103) v2cucwmbB162
CsaV3_2G002600Wax gourdcucwgoB138
CsaV3_2G002600Wax gourdcucwgoB177
CsaV3_2G002600Wax gourdcucwgoB219