CsaV3_2G002600.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G002600.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 1137421 .. 1137723 (+)
Sequence length	303

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTGGAAATTAAATGAGGCTGTTGGGTGTGAGAGACCAGTTCAAAAGCCTCTCCAGTCTCCACTCCAATGTAAGCTTCTTCTCTCTAAGTCCTTATTACACTTTAAAACGCGTCTCTGCCCAATTCCCACTTTGAAAAGTAAATACTTTGGAGGAGGACCCCTCATGAGCTGCCGTATATGTCAATTTGTGGTACCCATTGTTCTGAAGGACATTCGTGCTTTCTTGTCGATATTACTTTACTTTCCAGGTCTTCTGGGTGAGTCTGAAAAACAAAAGAGGTCTAGCTTACATGTTTAG

mRNA sequence

ATGTTTTGGAAATTAAATGAGGCTGTTGGGTGTGAGAGACCAGTTCAAAAGCCTCTCCAGTCTCCACTCCAATGTAAGCTTCTTCTCTCTAAGTCCTTATTACACTTTAAAACGCGTCTCTGCCCAATTCCCACTTTGAAAAGTAAATACTTTGGAGGAGGACCCCTCATGAGCTGCCGTATATGTCAATTTGTGGTACCCATTGTTCTGAAGGACATTCGTGCTTTCTTGTCGATATTACTTTACTTTCCAGGTCTTCTGGGTGAGTCTGAAAAACAAAAGAGGTCTAGCTTACATGTTTAG

Coding sequence (CDS)

ATGTTTTGGAAATTAAATGAGGCTGTTGGGTGTGAGAGACCAGTTCAAAAGCCTCTCCAGTCTCCACTCCAATGTAAGCTTCTTCTCTCTAAGTCCTTATTACACTTTAAAACGCGTCTCTGCCCAATTCCCACTTTGAAAAGTAAATACTTTGGAGGAGGACCCCTCATGAGCTGCCGTATATGTCAATTTGTGGTACCCATTGTTCTGAAGGACATTCGTGCTTTCTTGTCGATATTACTTTACTTTCCAGGTCTTCTGGGTGAGTCTGAAAAACAAAAGAGGTCTAGCTTACATGTTTAG

Protein sequence

MFWKLNEAVGCERPVQKPLQSPLQCKLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCRICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV

Homology

[Close]

BLAST of CsaV3_2G002600.1 vs. NCBI nr
Match: KGN60652.1 (hypothetical protein Csa_2G005980 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 5.2e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60
           MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR
Sbjct: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60

Query: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 101
           ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV
Sbjct: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 100

[Close]

BLAST of CsaV3_2G002600.1 vs. TrEMBL
Match: tr|A0A0A0LIW4|A0A0A0LIW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005980 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60
           MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR
Sbjct: 1   MFWKLNEAVGCERPVXXXXXXXXXXXLLLSKSLLHFKTRLCPIPTLKSKYFGGGPLMSCR 60

Query: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 101
           ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV
Sbjct: 61  ICQFVVPIVLKDIRAFLSILLYFPGLLGESEKQKRSSLHV 100

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60652.1	5.2e-43	100.00	hypothetical protein Csa_2G005980 [Cucumis sativus]	[more]

BLAST of CsaV3_2G002600.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIW4\|A0A0A0LIW4_CUCSA	3.4e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G002600	CsaV3_2G002600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002600.1.exon1	CsaV3_2G002600.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002600.1.cds1	CsaV3_2G002600.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002600.1	CsaV3_2G002600.1-protein	polypeptide