CsaV3_1G036920 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G036920
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 22831139 .. 22831359 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

mRNA sequence

GCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

Coding sequence (CDS)

GCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

Protein sequence

AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIVFKGPWEAMGGA

Homology

[Close]

BLAST of CsaV3_1G036920 vs. NCBI nr
Match: KGN65884.1 (hypothetical protein Csa_1G537340 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60
           AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI
Sbjct: 81  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 140

Query: 61  VFKGPWEAMGGA 73
           VFKGPWEAMGGA
Sbjct: 141 VFKGPWEAMGGA 152

[Close]

BLAST of CsaV3_1G036920 vs. NCBI nr
Match: KGN59282.1 (hypothetical protein Csa_3G800650 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 2  ELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIV 61
          + FG IGSPTKKDIEDD++WETTM ASC SLN FFERGFDFERGRSLKK KDEVIR+DIV
Sbjct: 21 KFFGHIGSPTKKDIEDDTEWETTMIASCESLNDFFERGFDFERGRSLKKAKDEVIRNDIV 80

Query: 62 FK 64
          FK
Sbjct: 81 FK 82

[Close]

BLAST of CsaV3_1G036920 vs. TrEMBL
Match: tr|A0A0A0LXW0|A0A0A0LXW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537340 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60
           AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI
Sbjct: 81  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 140

Query: 61  VFKGPWEAMGGA 73
           VFKGPWEAMGGA
Sbjct: 141 VFKGPWEAMGGA 152

[Close]

BLAST of CsaV3_1G036920 vs. TrEMBL
Match: tr|A0A0A0LF01|A0A0A0LF01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800650 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 2  ELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIV 61
          + FG IGSPTKKDIEDD++WETTM ASC SLN FFERGFDFERGRSLKK KDEVIR+DIV
Sbjct: 21 KFFGHIGSPTKKDIEDDTEWETTMIASCESLNDFFERGFDFERGRSLKKAKDEVIRNDIV 80

Query: 62 FK 64
          FK
Sbjct: 81 FK 82

The following BLAST results are available for this feature:

BLAST of CsaV3_1G036920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65884.1	2.9e-35	100.00	hypothetical protein Csa_1G537340 [Cucumis sativus]	[more]
KGN59282.1	8.2e-22	83.87	hypothetical protein Csa_3G800650 [Cucumis sativus]	[more]

BLAST of CsaV3_1G036920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G036920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G036920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXW0\|A0A0A0LXW0_CUCSA	1.9e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537340 PE=4 SV=1	[more]
tr\|A0A0A0LF01\|A0A0A0LF01_CUCSA	5.4e-22	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800650 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G036920.1	CsaV3_1G036920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G036920	CsGy1G024070	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G036920	Silver-seed gourd	carcucB0235
CsaV3_1G036920	Silver-seed gourd	carcucB0454
CsaV3_1G036920	Cucumber (Gy14) v1	cgycucB267
CsaV3_1G036920	Cucurbita maxima (Rimu)	cmacucB0251
CsaV3_1G036920	Cucurbita maxima (Rimu)	cmacucB0467
CsaV3_1G036920	Cucurbita moschata (Rifu)	cmocucB0237
CsaV3_1G036920	Cucurbita moschata (Rifu)	cmocucB0458
CsaV3_1G036920	Cucurbita pepo (Zucchini)	cpecucB0032
CsaV3_1G036920	Cucurbita pepo (Zucchini)	cpecucB0626
CsaV3_1G036920	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G036920	Bottle gourd (USVL1VR-Ls)	cuclsiB023
CsaV3_1G036920	Melon (DHL92) v3.5.1	cucmeB027
CsaV3_1G036920	Melon (DHL92) v3.6.1	cucmedB026
CsaV3_1G036920	Watermelon (Charleston Gray)	cucwcgB054
CsaV3_1G036920	Watermelon (97103) v1	cucwmB030
CsaV3_1G036920	Watermelon (97103) v2	cucwmbB045