CsaV3_1G036920.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G036920.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 22831139 .. 22831359 (-)
Sequence length219
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

mRNA sequence

GCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

Coding sequence (CDS)

GCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

Protein sequence

AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIVFKGPWEAMGGA
Homology
[Close]
BLAST of CsaV3_1G036920.1 vs. NCBI nr
Match: KGN65884.1 (hypothetical protein Csa_1G537340 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1   AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60
           AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI
Sbjct: 81  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 140

Query: 61  VFKGPWEAMGGA 73
           VFKGPWEAMGGA
Sbjct: 141 VFKGPWEAMGGA 152

[Close]
BLAST of CsaV3_1G036920.1 vs. NCBI nr
Match: KGN59282.1 (hypothetical protein Csa_3G800650 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 2  ELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIV 61
          + FG IGSPTKKDIEDD++WETTM ASC SLN FFERGFDFERGRSLKK KDEVIR+DIV
Sbjct: 21 KFFGHIGSPTKKDIEDDTEWETTMIASCESLNDFFERGFDFERGRSLKKAKDEVIRNDIV 80

Query: 62 FK 64
          FK
Sbjct: 81 FK 82

[Close]
BLAST of CsaV3_1G036920.1 vs. TrEMBL
Match: tr|A0A0A0LXW0|A0A0A0LXW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537340 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1   AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60
           AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI
Sbjct: 81  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 140

Query: 61  VFKGPWEAMGGA 73
           VFKGPWEAMGGA
Sbjct: 141 VFKGPWEAMGGA 152

[Close]
BLAST of CsaV3_1G036920.1 vs. TrEMBL
Match: tr|A0A0A0LF01|A0A0A0LF01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800650 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 2  ELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIV 61
          + FG IGSPTKKDIEDD++WETTM ASC SLN FFERGFDFERGRSLKK KDEVIR+DIV
Sbjct: 21 KFFGHIGSPTKKDIEDDTEWETTMIASCESLNDFFERGFDFERGRSLKKAKDEVIRNDIV 80

Query: 62 FK 64
          FK
Sbjct: 81 FK 82

The following BLAST results are available for this feature:
BLAST of CsaV3_1G036920.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65884.12.9e-35100.00hypothetical protein Csa_1G537340 [Cucumis sativus][more]
KGN59282.18.2e-2283.87hypothetical protein Csa_3G800650 [Cucumis sativus][more]
BLAST of CsaV3_1G036920.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036920.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036920.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXW0|A0A0A0LXW0_CUCSA1.9e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537340 PE=4 SV=1[more]
tr|A0A0A0LF01|A0A0A0LF01_CUCSA5.4e-2283.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800650 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G036920CsaV3_1G036920gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G036920.1.cds1CsaV3_1G036920.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G036920.1.exon1CsaV3_1G036920.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G036920.1CsaV3_1G036920.1-proteinpolypeptide