CsaV3_1G006740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4327835 .. 4328173 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGTAATAAGTTCCCAATTGATCATCCAAAGAAGCTATATATGAACAAAAAAGTAAACTAATATCTCAAAAGAAAAAAATGTGGCTCTCTCTTTAATTATAATTTATTGAATTATCATATTTATAATTGCTTAATTTATGCAGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

mRNA sequence

ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

Coding sequence (CDS)

ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

Protein sequence

MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEISPQIFI
Homology
[Close]
BLAST of CsaV3_1G006740 vs. NCBI nr
Match: KGN64133.1 (hypothetical protein Csa_1G042450 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60
          MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS
Sbjct: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60

Query: 61 PQIFI 66
          PQIFI
Sbjct: 61 PQIFI 65

[Close]
BLAST of CsaV3_1G006740 vs. TrEMBL
Match: tr|A0A0A0LQT4|A0A0A0LQT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042450 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60
          MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS
Sbjct: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60

Query: 61 PQIFI 66
          PQIFI
Sbjct: 61 PQIFI 65

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64133.12.4e-28100.00hypothetical protein Csa_1G042450 [Cucumis sativus][more]
BLAST of CsaV3_1G006740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQT4|A0A0A0LQT4_CUCSA1.6e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042450 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006740.1CsaV3_1G006740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006740CsGy1G006620Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006740Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006740Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006740Silver-seed gourdcarcucB0418
CsaV3_1G006740Silver-seed gourdcarcucB0548
CsaV3_1G006740Silver-seed gourdcarcucB0630
CsaV3_1G006740Silver-seed gourdcarcucB0825
CsaV3_1G006740Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006740Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006740Cucumber (Gy14) v1cgycucB145
CsaV3_1G006740Cucumber (Gy14) v1cgycucB163
CsaV3_1G006740Cucumber (Gy14) v1cgycucB434
CsaV3_1G006740Cucurbita maxima (Rimu)cmacucB0065
CsaV3_1G006740Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006740Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006740Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006740Cucurbita maxima (Rimu)cmacucB0485
CsaV3_1G006740Cucurbita moschata (Rifu)cmocucB0052
CsaV3_1G006740Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006740Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006740Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006740Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006740Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006740Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006740Cucurbita pepo (Zucchini)cpecucB0449
CsaV3_1G006740Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006740Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006740Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006740Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006740Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006740Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006740Bottle gourd (USVL1VR-Ls)cuclsiB063
CsaV3_1G006740Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006740Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006740Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006740Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006740Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006740Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006740Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006740Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006740Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006740Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006740Watermelon (97103) v1cucwmB043
CsaV3_1G006740Watermelon (97103) v1cucwmB070
CsaV3_1G006740Watermelon (97103) v1cucwmB107
CsaV3_1G006740Watermelon (97103) v2cucwmbB054
CsaV3_1G006740Watermelon (97103) v2cucwmbB078
CsaV3_1G006740Wax gourdcucwgoB014
CsaV3_1G006740Wax gourdcucwgoB031