CsGy1G006620 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G006620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 4299898 .. 4300644 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGTAATAAGTTCCCAATTGATCATCCAAAGAAGCTATATATGAACAAAAAAGTAAACTAATATCTCAAAAGAAAAAAATGTGGCTCTCTCTTTAATTATAATTTATTGAATTATCATATTTATAATTGCTTAATTTATGCAGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAGGTTTTTCCCTTGTTTTCTTTGTTCTCACGACATAACGCTCTCTATCCTCTCCATTTACACGGACGGGGCGGGGGGGTGCACTGACCAACGGTTTGGCGGCTGCCTCCTCCTCTCCACACAGCAGCAGGCGGCACCGAAAACTGATATATAGAAGGGTGGCGAGTGGGCTGAAAACTGGAAAATCTGCCGTTATTATACATTAACTTTTTGGTAGATTTATGTAACTGCAAAGCTAGGGGCTTAGGGTCTGAACACTGGAAAATGGTTATGCAATTAATAATTATGAGTGTGGACAGTAAGTGATTTAAGAAAATATTACAAAATCGTTGTGTGTTTGAAGTTTTGGTATGTTTTCTCCATGTCAAAACAAAAATAGATTTGTTGGGATTAAAAAAAGTTATAAAAGAA

mRNA sequence

ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAGGTTTTTCCCTTGTTTTCTTTGTTCTCACGACATAACGCTCTCTATCCTCTCCATTTACACGGACGGGGCGGGGGGGTGCACTGACCAACGGTTTGGCGGCTGCCTCCTCCTCTCCACACAGCAGCAGGCGGCACCGAAAACTGATATATAGAAGGGTGGCGAGTGGGCTGAAAACTGGAAAATCTGCCGTTATTATACATTAACTTTTTGGTAGATTTATGTAACTGCAAAGCTAGGGGCTTAGGGTCTGAACACTGGAAAATGGTTATGCAATTAATAATTATGAGTGTGGACAGTAAGTGATTTAAGAAAATATTACAAAATCGTTGTGTGTTTGAAGTTTTGGTATGTTTTCTCCATGTCAAAACAAAAATAGATTTGTTGGGATTAAAAAAAGTTATAAAAGAA

Coding sequence (CDS)

ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

Protein sequence

MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEISPQIFI
Homology
[Close]
BLAST of CsGy1G006620 vs. NCBI nr
Match: KGN64133.1 (hypothetical protein Csa_1G042450 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60
          MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS
Sbjct: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60

Query: 61 PQIFI 66
          PQIFI
Sbjct: 61 PQIFI 65

[Close]
BLAST of CsGy1G006620 vs. TrEMBL
Match: tr|A0A0A0LQT4|A0A0A0LQT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042450 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60
          MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS
Sbjct: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60

Query: 61 PQIFI 66
          PQIFI
Sbjct: 61 PQIFI 65

The following BLAST results are available for this feature:
BLAST of CsGy1G006620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64133.15.2e-28100.00hypothetical protein Csa_1G042450 [Cucumis sativus][more]
BLAST of CsGy1G006620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G006620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G006620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQT4|A0A0A0LQT4_CUCSA3.4e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042450 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006620.1CsGy1G006620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G006620Csa1G042450Cucumber (Chinese Long) v2cgybcuB001
CsGy1G006620CsaV3_1G006740Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G006620Cucumber (Chinese Long) v3cgybcucB003
CsGy1G006620Watermelon (97103) v2cgybwmbB053
CsGy1G006620Watermelon (97103) v2cgybwmbB078
CsGy1G006620Wax gourdcgybwgoB013
CsGy1G006620Wax gourdcgybwgoB025
CsGy1G006620Cucumber (Gy14) v2cgybcgybB002
CsGy1G006620Cucumber (Gy14) v2cgybcgybB027
CsGy1G006620Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G006620Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G006620Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G006620Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G006620Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G006620Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G006620Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G006620Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G006620Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G006620Cucumber (Chinese Long) v2cgybcuB005
CsGy1G006620Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G006620Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G006620Melon (DHL92) v3.5.1cgybmeB022
CsGy1G006620Melon (DHL92) v3.5.1cgybmeB052
CsGy1G006620Melon (DHL92) v3.6.1cgybmedB020
CsGy1G006620Melon (DHL92) v3.6.1cgybmedB046
CsGy1G006620Watermelon (Charleston Gray)cgybwcgB053
CsGy1G006620Watermelon (Charleston Gray)cgybwcgB080
CsGy1G006620Watermelon (97103) v1cgybwmB064
CsGy1G006620Watermelon (97103) v1cgybwmB096
CsGy1G006620Wild cucumber (PI 183967)cgybcpiB001
CsGy1G006620Wild cucumber (PI 183967)cgybcpiB005
CsGy1G006620Silver-seed gourdcarcgybB0393
CsGy1G006620Silver-seed gourdcarcgybB0518
CsGy1G006620Silver-seed gourdcarcgybB0595