Csa1G042450 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G042450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4308555 .. 4308893 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGTAATAAGTTCCCAATTGATCATCCAAAGAAGCTATATATGAACAAAAAAGTAAACTAATATCTCAAAAGAAAAAAATGTGGCTCTCTCTTTAATTATAATTTATTGAATTATCATATTTATAATTGCTTAATTTATGCAGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

mRNA sequence

ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

Coding sequence (CDS)

ATGGAAGAAAAAAAGAAGACTGTTTTTGGGTTGATGGAGCTTACGTGGGATTTCAGTGATATTCTGAACTTACGTCTCTGTTGTTTTCTCATTTGGCTACGTGTAGTTCAGGCTTGTGTGGAGTGGCTCTCTTTCTTATGCATGGTTTTGCAGAAGGTTTTGGAGGATATGGAGATCAGTCCTCAAATTTTCATATAG

Protein sequence

MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEISPQIFI*
Homology
[Close]
BLAST of Csa1G042450 vs. TrEMBL
Match: A0A0A0LQT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042450 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60
          MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS
Sbjct: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60

Query: 61 PQIFI 66
          PQIFI
Sbjct: 61 PQIFI 65

[Close]
BLAST of Csa1G042450 vs. NCBI nr
Match: gi|700209037|gb|KGN64133.1| (hypothetical protein Csa_1G042450 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 8.4e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60
          MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS
Sbjct: 1  MEEKKKTVFGLMELTWDFSDILNLRLCCFLIWLRVVQACVEWLSFLCMVLQKVLEDMEIS 60

Query: 61 PQIFI 66
          PQIFI
Sbjct: 61 PQIFI 65

The following BLAST results are available for this feature:
BLAST of Csa1G042450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQT4_CUCSA5.9e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042450 PE=4 SV=1[more]
BLAST of Csa1G042450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209037|gb|KGN64133.1|8.4e-30100.00hypothetical protein Csa_1G042450 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G042450.1Csa1G042450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G042450CsGy1G006620Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G042450Silver-seed gourdcarcuB0415
Csa1G042450Silver-seed gourdcarcuB0542
Csa1G042450Silver-seed gourdcarcuB0623
Csa1G042450Silver-seed gourdcarcuB0802
Csa1G042450Watermelon (97103) v2cuwmbB054
Csa1G042450Watermelon (97103) v2cuwmbB080
Csa1G042450Wax gourdcuwgoB014
Csa1G042450Wax gourdcuwgoB028
Csa1G042450Cucumber (Chinese Long) v2cucuB031
Csa1G042450Cucumber (Chinese Long) v2cucuB000
Csa1G042450Cucumber (Gy14) v1cgycuB139
Csa1G042450Cucumber (Gy14) v1cgycuB159
Csa1G042450Cucumber (Gy14) v1cgycuB406
Csa1G042450Cucurbita maxima (Rimu)cmacuB056
Csa1G042450Cucurbita maxima (Rimu)cmacuB088
Csa1G042450Cucurbita maxima (Rimu)cmacuB217
Csa1G042450Cucurbita maxima (Rimu)cmacuB406
Csa1G042450Cucurbita maxima (Rimu)cmacuB390
Csa1G042450Cucurbita moschata (Rifu)cmocuB046
Csa1G042450Cucurbita moschata (Rifu)cmocuB077
Csa1G042450Cucurbita moschata (Rifu)cmocuB202
Csa1G042450Cucurbita moschata (Rifu)cmocuB380
Csa1G042450Cucurbita moschata (Rifu)cmocuB395
Csa1G042450Melon (DHL92) v3.5.1cumeB011
Csa1G042450Melon (DHL92) v3.5.1cumeB027
Csa1G042450Melon (DHL92) v3.5.1cumeB056
Csa1G042450Watermelon (Charleston Gray)cuwcgB057
Csa1G042450Watermelon (Charleston Gray)cuwcgB064
Csa1G042450Watermelon (Charleston Gray)cuwcgB083
Csa1G042450Watermelon (97103) v1cuwmB040
Csa1G042450Watermelon (97103) v1cuwmB062
Csa1G042450Watermelon (97103) v1cuwmB096
Csa1G042450Cucurbita pepo (Zucchini)cpecuB028
Csa1G042450Cucurbita pepo (Zucchini)cpecuB029
Csa1G042450Cucurbita pepo (Zucchini)cpecuB369
Csa1G042450Cucurbita pepo (Zucchini)cpecuB505
Csa1G042450Cucurbita pepo (Zucchini)cpecuB655
Csa1G042450Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G042450Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G042450Cucumber (Gy14) v2cgybcuB004
Csa1G042450Cucumber (Gy14) v2cgybcuB199
Csa1G042450Melon (DHL92) v3.6.1cumedB022
Csa1G042450Melon (DHL92) v3.6.1cumedB006
Csa1G042450Melon (DHL92) v3.6.1cumedB048