CsaV3_1G000230 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACAATCTCTTCAATTAAGACCCAATAATAAATGTAGAGAGAATTGGAAGAGAGAGAGAGAGAGTGGTAGTGGGGTCGGTAGGGATGGCATAATTCTGTGAGACGGAAAGAAAGAAAGAAAGAAAGGAGAGAGTGAAAGCGAAAGGGTTTTCGCTTCTCCAATCTCCAACCTTGGCCAAAGTTTTCCTTTGGATTCGTCTTCCTTCATCACACACACTTTTAGGGTTCCTTCTCTTCTTCCCATTTGTCCGATCATCATCACTCACTCACCATCCACGAAGATGATAGACTTCGCTCGGGTGCAAAAGGAGCTCCAAGAATGCACTAAAGACATTGAGGCTTCTGGTATTAGAGTCACCCCCAAATCCGATAGTCTTTCCCATTTGCTCGGCACCATTCCTGGTCCTATCTCTACTCCGTACGAAGGTGGCATTTTCCAAATTGACATTACATTACCAGGTCCCCTCCTATTGCTCCTTACTCTTCTTCTACCTCATCATTAATATATCTGCCTTCTTATCTTCAGCCATTAGGGCTACACGATCTATGATTCGATGAGTCGGGGATTTGCGTTTGAAATTTCCTTACACAATTTCATGACATGACATCTTTTGAAGTGTTAACAGTCCACGCTAGTTTTAGAAGGTTTTTTTTTTTTTTTTTCTTTGAAGTTTCTCCTATCCTTTCTCAACTTTTGTTTTGTCAAAAACTAAAGTAAAACCCAAGCCCTTGAGCATTATTTTTTTAACTCCCAATTAATGATTGAGAGCTTTTTTAAGTTTTATTGAACTTGTTTATTCAACAATCTTGTTACCCATTTGCGGCATGAACAAAACCATTTCCCAATAAGAGCTTTGTGGAAAGAACCTTTCCTTGCTCTGTTGAAATTTTATGGTAAAAGATTGTAACTTGTCCATGTCTCTTCCAAGCATCTTATCATGTTCCCTGAGTATCAATAACATATATTTACCATATTTCCATATATTGATGGCGAAGGAAATTCCTCTTTAAGTAATATAATGCGTTAACTGAATGCCACAGAAAGCTTACAGCTCTGAATTAGCAATCAAATAACAATTGTAGCAGAAATAAAGTCAATTGACAAATTACATTTATTATCGTAATATCCTCGATGGACTATGGAGATTAAAAACTCTCATCTTGACCGAAAACCTTGAAGAACAGGGACGACATAGCCATGGTGAAAATGTCAGTGAGTTGAGATGAAGATTTAACCGGTAAAAGCTTCAAAGAACCACGTAAAATCATGTTCTGAACAATGTAGCAATCAATTTTGATATGGTTTGTTCGTACATGAAACGTTGGATTGGAAGCAATGACTATCACAACTTGATTATCACAATACACCAAAGCTGGAGCTAAAAGAGAGACCTTCAAATTGGAAAATAGACTACCAATTCATGTTAGCTTATGGGAAAACTTGCCAATGCTCGGTATTCAGCTTCATCAGAAGAGTGCAAAATAGTAGCTCATTTTTGTATTTCCCATGCAACCATTGTATTGCCTAAAAAGATGCAAAAACCAGTGATAGATCTTTGAGTATCAGTACATGATCTCCAATCAGAGTCAACAAACGCTTTTAACCAAAATTTGGTTGTTGGTTTAATGAGGATTCCTCGCCCAGTAGTTCAGTTTGGGTACCAAAAAAGGTGATGAGTAGGCATCAAATGATCTGTATAAGGCTTGGAAATGAATTGACTTAGTTAATTGACTGCAAAAGCAATGTTTGGTCGAGATGTCTGAAAATATAAACAATTGACCAGCTAATTGCTAGTAATGAGAAGAGTCCTCTGAAGAAACAGAGTTCCCGATTGAGCAGTCAATTTTAGATTGGGACAATTTACTGGTTTAGAGGCAAAAAATCAGAATCTTCTACCATCTGCAAGCACCATTTTCGTTGAGATAGGGATAATCCTTGTGAAGATCTTGACAATTCCAATCTTAAAGAAAGATCGAGCATCACCAAAATCTTTAAGAAGAAAATGAGAGCACTAGAAACTTTTGACTGAAGCAATTTCAGAAAATATAAACAATTGACCAGCTAATTGCTAGTAATGAGAAGGTCCTCTGAAGAAACAGAGTACCCGATTGAGCAGTCAATTTTAGATTGGGACAACTTACTGGTTTAGAGGCAAAAAATCAGAATCTTCTACCATCTGCAAGCACCATTTTCGTTGAGATAGGGATAATCCTTGTGAAGATCTTGACAACTCCAAGCTTAAAGAAAGATCGAGCATCACCCAAATCTTTAAGAAGAAAATGAGAGCGCTAGAAACTTTTGACTGGAGCAATTTCATGGGGTGATGGTTCACTGAGTAGTATATCATCCACATGTACTAATAGGGCAACAAAACTTGAGCCATGGCCTTTGTGAATAATGAGTAGTTAGCTTTTTAGACTGAGTAAACCAATGAGATATCAATATAAAGACCGTGGGAAACTTGCTGAAGTTCCACATGCCAAGCACAGTTTCAAAACACTGCCTTATCTAACCCTTAGCATGTATCTTAGACATGGTTTTTTTCTTTTTCCCTTGCAGATGGGTATCCATTTGAGCCTCCCAAAATGCAGTTTGCTACAAAAGTCTGGTAAGGACCACCTCCTTTCTTATTTACATTTGCTGAGCAGTCAATCTTGATATCTCTTATGTATGCATTAAGTGCTTTCATGTTTAGTGGATGGAGTTACTTTTCAGAGAGCATGTGTGTTTACAATGCTTATATGTATGTATATTTTGATGGAATCAAATAACATATATATATAAATTTTAACCGTAAGGGAACTTCATGGTATTGGCTTAGTTCAACATATGTGAACAAGGTTATGTGTAACTATGGAGTTTGGTCTATTATGTTTTGAAGGCACCCTAATATTAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGCCCAGCACTTACGTTGAAGACAGCCCTGCTCTCTGTGCAGGCACTGCTGTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTCGTGGCACAACAGGTATTGTCAGCTCTATCTTGAATGCATGGATGTTCGTTCTTTTTGTCTTTGGATATTGGTATTGAGGATGTCAACTTTAAATTGTATCAATTTTTTTTAACAATATGTATTGCTGCAGTATCTTAGAGACTACCAGACTTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCATCTCTTGGGGTGGAAGAAAAGGTTAAAGCCTTAACTTTGGTTTTGCATGTTGTGTGAATGATAAATCATATATAGTTTTGAGTTTGAGGAGTAGTTGGAATGAAAGCATGCGTGTGTGGTTTGTGTGTCAACTGAAGATTGATGTGAAGGAAATGGTGCAGGTTCAGAAACTCATGGAGATGGGATTCCCCGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGTTGGGATGAAAATTTGGCTTTGGAAAAACTCTGCTCCGGCTAGAGTCTCACTCCTTTGCCACCCGCCGAACATAGGAGTATATATTGATCCAAAGGGTCGTATCTATAGTATATAGCCCCTTTTTTTTT ATGATAGACTTCGCTCGGGTGCAAAAGGAGCTCCAAGAATGCACTAAAGACATTGAGGCTTCTGGTATTAGAGTCACCCCCAAATCCGATAGTCTTTCCCATTTGCTCGGCACCATTCCTGGTCCTATCTCTACTCCGTACGAAGGTGGCATTTTCCAAATTGACATTACATTACCAGATGGGTATCCATTTGAGCCTCCCAAAATGCAGTTTGCTACAAAAGTCTGGCACCCTAATATTAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGCCCAGCACTTACGTTGAAGACAGCCCTGCTCTCTGTGCAGGCACTGCTGTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTCGTGGCACAACAGTATCTTAGAGACTACCAGACTTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCATCTCTTGGGGTGGAAGAAAAGGTTCAGAAACTCATGGAGATGGGATTCCCCGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGTTGGGATGAAAATTTGGCTTTGGAAAAACTCTGCTCCGGCTAG ATGATAGACTTCGCTCGGGTGCAAAAGGAGCTCCAAGAATGCACTAAAGACATTGAGGCTTCTGGTATTAGAGTCACCCCCAAATCCGATAGTCTTTCCCATTTGCTCGGCACCATTCCTGGTCCTATCTCTACTCCGTACGAAGGTGGCATTTTCCAAATTGACATTACATTACCAGATGGGTATCCATTTGAGCCTCCCAAAATGCAGTTTGCTACAAAAGTCTGGCACCCTAATATTAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGCCCAGCACTTACGTTGAAGACAGCCCTGCTCTCTGTGCAGGCACTGCTGTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTCGTGGCACAACAGTATCTTAGAGACTACCAGACTTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCATCTCTTGGGGTGGAAGAAAAGGTTCAGAAACTCATGGAGATGGGATTCCCCGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGTTGGGATGAAAATTTGGCTTTGGAAAAACTCTGCTCCGGCTAG MIDFARVQKELQECTKDIEASGIRVTPKSDSLSHLLGTIPGPISTPYEGGIFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLRDYQTFAGTARYWTETFAKTSSLGVEEKVQKLMEMGFPEAQVRSSLEAVGWDENLALEKLCSG
BLAST of CsaV3_1G000230 vs. NCBI nr
Match: XP_004138029.1 (PREDICTED: ubiquitin-conjugating enzyme E2 27 [Cucumis sativus] >KGN63451.1 hypothetical protein Csa_1G000740 [Cucumis sativus]) HSP 1 Score: 393.7 bits (1010), Expect = 3.7e-106 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. NCBI nr
Match: XP_008464378.1 (PREDICTED: ubiquitin-conjugating enzyme E2 27 [Cucumis melo]) HSP 1 Score: 391.7 bits (1005), Expect = 1.4e-105 Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. NCBI nr
Match: XP_022921627.1 (ubiquitin-conjugating enzyme E2 27 [Cucurbita moschata] >XP_022921628.1 ubiquitin-conjugating enzyme E2 27 [Cucurbita moschata]) HSP 1 Score: 385.2 bits (988), Expect = 1.3e-103 Identity = 187/194 (96.39%), Postives = 193/194 (99.48%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. NCBI nr
Match: XP_023515392.1 (ubiquitin-conjugating enzyme E2 27 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 384.4 bits (986), Expect = 2.3e-103 Identity = 186/194 (95.88%), Postives = 193/194 (99.48%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. NCBI nr
Match: XP_022988308.1 (ubiquitin-conjugating enzyme E2 27 [Cucurbita maxima]) HSP 1 Score: 383.6 bits (984), Expect = 3.9e-103 Identity = 186/194 (95.88%), Postives = 193/194 (99.48%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TAIR10
Match: AT5G50870.2 (ubiquitin-conjugating enzyme 27) HSP 1 Score: 308.1 bits (788), Expect = 3.8e-84 Identity = 151/204 (74.02%), Postives = 176/204 (86.27%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TAIR10
Match: AT5G41700.4 (ubiquitin conjugating enzyme 8) HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34 Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TAIR10
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11) HSP 1 Score: 139.8 bits (351), Expect = 1.8e-33 Identity = 69/144 (47.92%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TAIR10
Match: AT4G27960.2 (ubiquitin conjugating enzyme 9) HSP 1 Score: 138.7 bits (348), Expect = 3.9e-33 Identity = 69/144 (47.92%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TAIR10
Match: AT5G53300.1 (ubiquitin-conjugating enzyme 10) HSP 1 Score: 138.3 bits (347), Expect = 5.1e-33 Identity = 69/144 (47.92%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. Swiss-Prot
Match: sp|Q9FI61|UBC27_ARATH (Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana OX=3702 GN=UBC27 PE=2 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 1.9e-85 Identity = 151/193 (78.24%), Postives = 176/193 (91.19%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. Swiss-Prot
Match: sp|P61085|UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus OX=9913 GN=UBE2K PE=1 SV=3) HSP 1 Score: 185.3 bits (469), Expect = 6.6e-46 Identity = 95/192 (49.48%), Postives = 127/192 (66.15%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. Swiss-Prot
Match: sp|P61086|UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens OX=9606 GN=UBE2K PE=1 SV=3) HSP 1 Score: 185.3 bits (469), Expect = 6.6e-46 Identity = 95/192 (49.48%), Postives = 127/192 (66.15%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. Swiss-Prot
Match: sp|P61087|UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus OX=10090 GN=Ube2k PE=1 SV=3) HSP 1 Score: 185.3 bits (469), Expect = 6.6e-46 Identity = 95/192 (49.48%), Postives = 127/192 (66.15%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. Swiss-Prot
Match: sp|P52484|UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans OX=6239 GN=ubc-21 PE=3 SV=3) HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45 Identity = 92/190 (48.42%), Postives = 123/190 (64.74%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TrEMBL
Match: tr|A0A0A0LTY2|A0A0A0LTY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000740 PE=3 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 2.5e-106 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TrEMBL
Match: tr|A0A1S3CLG3|A0A1S3CLG3_CUCME (ubiquitin-conjugating enzyme E2 27 OS=Cucumis melo OX=3656 GN=LOC103502281 PE=3 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 9.4e-106 Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TrEMBL
Match: tr|A0A067JF67|A0A067JF67_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26392 PE=3 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 2.7e-97 Identity = 176/194 (90.72%), Postives = 188/194 (96.91%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TrEMBL
Match: tr|A0A2C9UJU0|A0A2C9UJU0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G047100 PE=3 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 3.6e-97 Identity = 177/194 (91.24%), Postives = 188/194 (96.91%), Query Frame = 0
BLAST of CsaV3_1G000230 vs. TrEMBL
Match: tr|B9RA92|B9RA92_RICCO (Ubiquitin-conjugating enzyme E2-25kD, putative OS=Ricinus communis OX=3988 GN=RCOM_1504700 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96 Identity = 174/194 (89.69%), Postives = 185/194 (95.36%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |