MELO3C034649.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034649.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Zf-CCHC domain-containing protein
Location	chr11 : 8082809 .. 8083795 (+)
Sequence length	987

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGATTGGGTATAAAGACACTTTCATGGCACGTCTGTATACCTTGACGACATGTGGAGCTGATATCTGGAAACAGAAATTTGTCAAAGGACTACCGCACTACATCTCTAAAAAATTCTATCAAACCATGACAGCAAACTCTATCAATCAACAAATAGATTGGGCAAATCTCACCTATGAAGATATTTCATCCACAGTTCAAATGATATGTGTTAATCTCTGCACAGAGAATAAACACACAACGAAGGTGATCAAAGATTCCGACTATAGGAAAGAATTAGGCACCTTCTGTAAGCAATATGGTCTGTCTCAAGGACCGAAGGAAGAAAAGAAGAAAAAGAAAAAATATTCTTCCAAAAAATTCTTTAGAAGAAGCAAACCTAAAGATCAAGAGTCTCCTTGAAGAAGGAAGCATCATTACAACAAAGGCATAGGCAAGAAGAGATACTCTTCAAAGACCAATACGATATGCTTCAAATGCAATCAAAAGGGTCACTATGCAAATCGTTGTCCCCTAAAAGATAGAGTCAATGCCCTGACAATAGATGAAGAGACAAAGCAATCCCTTCTTTATGCCATAAGATCGGATGATGATACCTCTTCTCAAACTGAATCTTCATCAGAAGAAGATTATATCAATATTCTACAAGAAGAAGGGTCCTCTTCTGAAGAAGAATTCTACTCTCAAAGTGATTCAAGTGATGACGAAGGAGCAATACCCTGCACAGGACGATGTGCTGGTAAGTGTTCTGGCCACATTAATTTCATCACCAAGGATCAGGAAACTCTTTTTGACCTCATCGAGTAGATCCCTGATGAAGAAGCGAAAAGAACCTGCCTCCTCAAATTAAAGCAAAGTTTAGAAGAACAAGTGCCTCAAAAGACAATTCAAAATCCGATTATGTATTCGTATCAAGACATACTAAATTGAGTAAAAGGCGAAGCAAAAATACCCATTCAAGTTGAAGATCTTCATCATGAGGTAA

mRNA sequence

ATAAGATTGGGTATAAAGACACTTTCATGGCACGTCTGTATACCTTGACGACATGTGGAGCTGATATCTGGAAACAGAAATTTGTCAAAGGACTACCGCACTACATCTCTAAAAAATTCTATCAAACCATGACAGCAAACTCTATCAATCAACAAATAGATTGGGCAAATCTCACCTATGAAGATATTTCATCCACAGTTCAAATGATATGTGTTAATCTCTGCACAGAGAATAAACACACAACGAAGGTGATCAAAGATTCCGACTATAGGAAAGAATTAGGCACCTTCTGTAAGCAATATGGTCTGTCTCAAGGACCGAAGGAAGAAAAGAAGAAAAAGAAAAAATATTCTTCCAAAAAATTCTTTAGAAGAAGCAAACCTAAAGATCAAGAGTCTCCTTGAAGAAGGAAGCATCATTACAACAAAGGCATAGGCAAGAAGAGATACTCTTCAAAGACCAATACGATATGCTTCAAATGCAATCAAAAGGGTCACTATGCAAATCGTTGTCCCCTAAAAGATAGAGTCAATGCCCTGACAATAGATGAAGAGACAAAGCAATCCCTTCTTTATGCCATAAGATCGGATGATGATACCTCTTCTCAAACTGAATCTTCATCAGAAGAAGATTATATCAATATTCTACAAGAAGAAGGGTCCTCTTCTGAAGAAGAATTCTACTCTCAAAGTGATTCAAGTGATGACGAAGGAGCAATACCCTGCACAGGACGATGTGCTGGTAAGTGTTCTGGCCACATTAATTTCATCACCAAGGATCAGGAAACTCTTTTTGACCTCATCGAGTAGATCCCTGATGAAGAAGCGAAAAGAACCTGCCTCCTCAAATTAAAGCAAAGTTTAGAAGAACAAGTGCCTCAAAAGACAATTCAAAATCCGATTATGTATTCGTATCAAGACATACTAAATTGAGTAAAAGGCGAAGCAAAAATACCCATTCAAGTTGAAGATCTTCATCATGAGGTAA

Coding sequence (CDS)

ATGGCACGTCTGTATACCTTGACGACATGTGGAGCTGATATCTGGAAACAGAAATTTGTCAAAGGACTACCGCACTACATCTCTAAAAAATTCTATCAAACCATGACAGCAAACTCTATCAATCAACAAATAGATTGGGCAAATCTCACCTATGAAGATATTTCATCCACAGTTCAAATGATATGTGTTAATCTCTGCACAGAGAATAAACACACAACGAAGGTGATCAAAGATTCCGACTATAGGAAAGAATTAGGCACCTTCTGTAAGCAATATGGTCTGTCTCAAGGACCGAAGGAAGAAAAGAAGAAAAAGAAAAAATATTCTTCCAAAAAATTCTTTAGAAGAAGCAAACCTAAAGATCAAGAGTCTCCTTGA

Protein sequence

MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQMICVNLCTENKHTTKVIKDSDYRKELGTFCKQYGLSQGPKEEKKKKKKYSSKKFFRRSKPKDQESP

Homology

[Close]

BLAST of MELO3C034649.2.1 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 71/94 (75.53%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           +ARLYT+TTCGADIWKQKFV+GLPHYI++KFYQT+  NS   +IDWA LT  DI++T+Q 
Sbjct: 300 LARLYTITTCGADIWKQKFVEGLPHYIAQKFYQTVVTNSTTNRIDWAELTIGDINATIQQ 359

Query: 61  ICVNLCTENKHTTKVIKDSDYRKELGTFCKQYGL 95
           ICVNLC ENKHT KVIK+ DYRKELGTFCKQYGL
Sbjct: 360 ICVNLCLENKHTAKVIKEPDYRKELGTFCKQYGL 393

[Close]

BLAST of MELO3C034649.2.1 vs. NCBI nr
Match: KRH38163.1 (hypothetical protein GLYMA_09G115500 [Glycine max])

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 32/100 (32.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           +  +YT+       WK+KF+ GLP  +  K    + + S+N  I + +LTY  + S VQ 
Sbjct: 636 LTTVYTMEDSQQPFWKEKFLAGLPRSLGDKVRDKIRSQSVNGDITYESLTYGQLISYVQK 695

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C +NK   ++ K+ +  +++LG+FC+Q+GL   PK
Sbjct: 696 VALKICQDNKIQRQLAKEKAQTKRDLGSFCEQFGLPACPK 735

[Close]

BLAST of MELO3C034649.2.1 vs. NCBI nr
Match: KRH13132.1 (hypothetical protein GLYMA_15G218300 [Glycine max])

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 33/100 (33.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  +  K    + + S+N  I + +L+Y  + S VQ 
Sbjct: 213 LTRVYTREDSQQPFWKEKFLAGLPRSLRDKVRDKIHSQSVNGDIPYESLSYGQLISYVQK 272

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +K+LG+FC+Q+GLS  PK
Sbjct: 273 VALKICQDDKIQRQLAKEKAQTKKDLGSFCEQFGLSACPK 312

[Close]

BLAST of MELO3C034649.2.1 vs. NCBI nr
Match: KRH37636.1 (hypothetical protein GLYMA_09G079200 [Glycine max])

HSP 1 Score: 69.7 bits (169), Expect = 7.9e-09
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  +  K    + + S N  I + NL+Y  + S VQ 
Sbjct: 319 LTRVYTREDSQQPFWKEKFLAGLPRSLGDKVRDKIRSQSANGDIPYENLSYGQLISYVQK 378

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +K+LG+FC+Q+GL   PK
Sbjct: 379 VALKICQDDKIQRQLAKEKAQTKKDLGSFCEQFGLPACPK 418

[Close]

BLAST of MELO3C034649.2.1 vs. NCBI nr
Match: KRG89538.1 (hypothetical protein GLYMA_20G030000 [Glycine max])

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 32/100 (32.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  + +K    + + S N  I + +L+Y  + S VQ 
Sbjct: 123 LTRVYTREDSQQPFWKEKFLAGLPRSLGEKVRDKIRSQSANGDIPYESLSYSQLISYVQK 182

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +K+LG+FC+Q+GL   PK
Sbjct: 183 VALKICQDDKIQRQLAKEKAQTKKDLGSFCEQFGLPACPK 222

[Close]

BLAST of MELO3C034649.2.1 vs. TrEMBL
Match: tr|A0A0R0ID04|A0A0R0ID04_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G115500 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 32/100 (32.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           +  +YT+       WK+KF+ GLP  +  K    + + S+N  I + +LTY  + S VQ 
Sbjct: 636 LTTVYTMEDSQQPFWKEKFLAGLPRSLGDKVRDKIRSQSVNGDITYESLTYGQLISYVQK 695

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C +NK   ++ K+ +  +++LG+FC+Q+GL   PK
Sbjct: 696 VALKICQDNKIQRQLAKEKAQTKRDLGSFCEQFGLPACPK 735

[Close]

BLAST of MELO3C034649.2.1 vs. TrEMBL
Match: tr|A0A0R0G4K6|A0A0R0G4K6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G218300 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 33/100 (33.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  +  K    + + S+N  I + +L+Y  + S VQ 
Sbjct: 213 LTRVYTREDSQQPFWKEKFLAGLPRSLRDKVRDKIHSQSVNGDIPYESLSYGQLISYVQK 272

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +K+LG+FC+Q+GLS  PK
Sbjct: 273 VALKICQDDKIQRQLAKEKAQTKKDLGSFCEQFGLSACPK 312

[Close]

BLAST of MELO3C034649.2.1 vs. TrEMBL
Match: tr|A0A0R0IED1|A0A0R0IED1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G079200 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.3e-09
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  +  K    + + S N  I + NL+Y  + S VQ 
Sbjct: 319 LTRVYTREDSQQPFWKEKFLAGLPRSLGDKVRDKIRSQSANGDIPYENLSYGQLISYVQK 378

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +K+LG+FC+Q+GL   PK
Sbjct: 379 VALKICQDDKIQRQLAKEKAQTKKDLGSFCEQFGLPACPK 418

[Close]

BLAST of MELO3C034649.2.1 vs. TrEMBL
Match: tr|A0A0R0EEK6|A0A0R0EEK6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G030000 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.9e-09
Identity = 32/100 (32.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  + +K    + + S N  I + +L+Y  + S VQ 
Sbjct: 123 LTRVYTREDSQQPFWKEKFLAGLPRSLGEKVRDKIRSQSANGDIPYESLSYSQLISYVQK 182

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +K+LG+FC+Q+GL   PK
Sbjct: 183 VALKICQDDKIQRQLAKEKAQTKKDLGSFCEQFGLPACPK 222

[Close]

BLAST of MELO3C034649.2.1 vs. TrEMBL
Match: tr|K7M6P8|K7M6P8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G141100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-09
Identity = 32/100 (32.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MARLYTLTTCGADIWKQKFVKGLPHYISKKFYQTMTANSINQQIDWANLTYEDISSTVQM 60
           + R+YT        WK+KF+ GLP  +  K    + + S N  I + NL+Y  + S VQ 
Sbjct: 897 LTRVYTREDSQQPFWKEKFLAGLPRSLGDKVRDKIRSQSANGDIPYENLSYGQLISCVQK 956

Query: 61  ICVNLCTENKHTTKVIKD-SDYRKELGTFCKQYGLSQGPK 100
           + + +C ++K   ++ K+ +  +++LG+FC+Q+GL   PK
Sbjct: 957 VALKICQDDKIQRQLAKEKAQTKRDLGSFCEQFGLPACPK 996

The following BLAST results are available for this feature:

BLAST of MELO3C034649.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151716.1	2.0e-36	75.53	uncharacterized protein LOC111019629 [Momordica charantia]	[more]
KRH38163.1	3.6e-09	32.00	hypothetical protein GLYMA_09G115500 [Glycine max]	[more]
KRH13132.1	4.7e-09	33.00	hypothetical protein GLYMA_15G218300 [Glycine max]	[more]
KRH37636.1	7.9e-09	33.00	hypothetical protein GLYMA_09G079200 [Glycine max]	[more]
KRG89538.1	1.0e-08	32.00	hypothetical protein GLYMA_20G030000 [Glycine max]	[more]

BLAST of MELO3C034649.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034649.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034649.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0R0ID04\|A0A0R0ID04_SOYBN	2.4e-09	32.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G115500 PE=4 SV=1	[more]
tr\|A0A0R0G4K6\|A0A0R0G4K6_SOYBN	3.1e-09	33.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G218300 PE=4 SV=1	[more]
tr\|A0A0R0IED1\|A0A0R0IED1_SOYBN	5.3e-09	33.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G079200 PE=4 SV=1	[more]
tr\|A0A0R0EEK6\|A0A0R0EEK6_SOYBN	6.9e-09	32.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G030000 PE=4 SV=1	[more]
tr\|K7M6P8\|K7M6P8_SOYBN	9.0e-09	32.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G141100 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C034649.2	MELO3C034649.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034649.2.1.exon.1	MELO3C034649.2.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034649.2.1.five_prime_UTR.1	MELO3C034649.2.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034649.2.1.CDS.1	MELO3C034649.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034649.2.1.three_prime_UTR.1	MELO3C034649.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C034649.2.1	MELO3C034649.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..125