MELO3C008980.2 (gene) Melon (DHL92) v3.6.1
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCTCTGTACTTCTTCTTCCTTTCATTGTTCTCTTTCCGCCTCTCCAAACACCCATCAATTCCTCATTGTTCGATTTCGGTATTCCAGCCGTCTCGTCATTTCAGATCAAATAATTCAACAGACTCCCTCAACCCTCATGGGGGACACTTTGATTCCTTTTTCTAATCTCCGCCATCCTCGACAACAACAATCAATTCAATTTTTGGTTAATCAGTTTCTGTGTTCCTTCAACCTCCATTCCTCTGTTCGCCGAACCATTTGTCACGAGATTCTCTCCTTTGCTTTACAGTTTCGTGCCATTCTTCCGAGCTTCAAAATTGAAGCCAACATCGATCATGTGGAGGACTTGATCATCGGAGAGCAAGGATTTCAAGAAACTCCACCCCCAAGGACAAGAGGGGCGCCGGAGTCTGCGATTGAGAGATTAATAATGAAGCAGAAATTTGATGGGTTTAATAAAGAAGAAGAAGAAGAAATCGGAGATTGCAGTGTTTGTTATGAAGAGCTAAAAGGAAAGGGGAAGGAGGTGAGTAGGATTCCATGTGGTCATGTGTATCACAAATCATGCGTCCTTACATGGCTTCAAATCAACAACTCTTGCCCATTGTGTAGAGCTCCATTAGAATCATGAACACACTCACTCTTCTTAATTTTGCTTATGAGAATTATCTTAGTTCTCT ATGTCTCTCTGTACTTCTTCTTCCTTTCATTGTTCTCTTTCCGCCTCTCCAAACACCCATCAATTCCTCATTGTTCGATTTCGGTATTCCAGCCGTCTCGTCATTTCAGATCAAATAATTCAACAGACTCCCTCAACCCTCATGGGGGACACTTTGATTCCTTTTTCTAATCTCCGCCATCCTCGACAACAACAATCAATTCAATTTTTGGTTAATCAGTTTCTGTGTTCCTTCAACCTCCATTCCTCTGTTCGCCGAACCATTTGTCACGAGATTCTCTCCTTTGCTTTACAGTTTCGTGCCATTCTTCCGAGCTTCAAAATTGAAGCCAACATCGATCATGTGGAGGACTTGATCATCGGAGAGCAAGGATTTCAAGAAACTCCACCCCCAAGGACAAGAGGGGCGCCGGAGTCTGCGATTGAGAGATTAATAATGAAGCAGAAATTTGATGGGTTTAATAAAGAAGAAGAAGAAGAAATCGGAGATTGCAGTGTTTGTTATGAAGAGCTAAAAGGAAAGGGGAAGGAGGTGAGTAGGATTCCATGTGGTCATGTGTATCACAAATCATGCGTCCTTACATGGCTTCAAATCAACAACTCTTGCCCATTGTGTAGAGCTCCATTAGAATCATGAACACACTCACTCTTCTTAATTTTGCTTATGAGAATTATCTTAGTTCTCT ATGTCTCTCTGTACTTCTTCTTCCTTTCATTGTTCTCTTTCCGCCTCTCCAAACACCCATCAATTCCTCATTGTTCGATTTCGGTATTCCAGCCGTCTCGTCATTTCAGATCAAATAATTCAACAGACTCCCTCAACCCTCATGGGGGACACTTTGATTCCTTTTTCTAATCTCCGCCATCCTCGACAACAACAATCAATTCAATTTTTGGTTAATCAGTTTCTGTGTTCCTTCAACCTCCATTCCTCTGTTCGCCGAACCATTTGTCACGAGATTCTCTCCTTTGCTTTACAGTTTCGTGCCATTCTTCCGAGCTTCAAAATTGAAGCCAACATCGATCATGTGGAGGACTTGATCATCGGAGAGCAAGGATTTCAAGAAACTCCACCCCCAAGGACAAGAGGGGCGCCGGAGTCTGCGATTGAGAGATTAATAATGAAGCAGAAATTTGATGGGTTTAATAAAGAAGAAGAAGAAGAAATCGGAGATTGCAGTGTTTGTTATGAAGAGCTAAAAGGAAAGGGGAAGGAGGTGAGTAGGATTCCATGTGGTCATGTGTATCACAAATCATGCGTCCTTACATGGCTTCAAATCAACAACTCTTGCCCATTGTGTAGAGCTCCATTAGAATCATGA MSLCTSSSFHCSLSASPNTHQFLIVRFRYSSRLVISDQIIQQTPSTLMGDTLIPFSNLRHPRQQQSIQFLVNQFLCSFNLHSSVRRTICHEILSFALQFRAILPSFKIEANIDHVEDLIIGEQGFQETPPPRTRGAPESAIERLIMKQKFDGFNKEEEEEIGDCSVCYEELKGKGKEVSRIPCGHVYHKSCVLTWLQINNSCPLCRAPLES
BLAST of MELO3C008980.2 vs. NCBI nr
Match: XP_008442291.1 (PREDICTED: RING finger protein 165-like [Cucumis melo]) HSP 1 Score: 344.0 bits (881), Expect = 3.7e-91 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of MELO3C008980.2 vs. NCBI nr
Match: XP_004139003.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN61460.1 hypothetical protein Csa_2G130680 [Cucumis sativus]) HSP 1 Score: 233.4 bits (594), Expect = 7.0e-58 Identity = 126/230 (54.78%), Postives = 154/230 (66.96%), Query Frame = 0
BLAST of MELO3C008980.2 vs. NCBI nr
Match: XP_008457277.1 (PREDICTED: RING finger protein 165-like [Cucumis melo]) HSP 1 Score: 194.5 bits (493), Expect = 3.6e-46 Identity = 114/230 (49.57%), Postives = 136/230 (59.13%), Query Frame = 0
BLAST of MELO3C008980.2 vs. NCBI nr
Match: KGN54844.1 (hypothetical protein Csa_4G539600 [Cucumis sativus]) HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37 Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0
BLAST of MELO3C008980.2 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima]) HSP 1 Score: 159.8 bits (403), Expect = 9.9e-36 Identity = 98/207 (47.34%), Postives = 132/207 (63.77%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TAIR10
Match: AT5G37200.1 (RING/U-box superfamily protein) HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12 Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein) HSP 1 Score: 65.1 bits (157), Expect = 6.0e-11 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TAIR10
Match: AT1G60360.1 (RING/U-box superfamily protein) HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TAIR10
Match: AT5G67120.1 (RING/U-box superfamily protein) HSP 1 Score: 62.8 bits (151), Expect = 3.0e-10 Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TAIR10
Match: AT5G60820.1 (RING/U-box superfamily protein) HSP 1 Score: 62.4 bits (150), Expect = 3.9e-10 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0
BLAST of MELO3C008980.2 vs. Swiss-Prot
Match: sp|Q6ZSG1|RN165_HUMAN (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12 Identity = 49/167 (29.34%), Postives = 80/167 (47.90%), Query Frame = 0
BLAST of MELO3C008980.2 vs. Swiss-Prot
Match: sp|E9QAU8|RN165_MOUSE (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12 Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 0
BLAST of MELO3C008980.2 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 5.7e-11 Identity = 43/125 (34.40%), Postives = 63/125 (50.40%), Query Frame = 0
BLAST of MELO3C008980.2 vs. Swiss-Prot
Match: sp|Q9C1X4|YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10 Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 0
BLAST of MELO3C008980.2 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TrEMBL
Match: tr|A0A1S3B605|A0A1S3B605_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 2.4e-91 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TrEMBL
Match: tr|A0A0A0LHS2|A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.6e-58 Identity = 126/230 (54.78%), Postives = 154/230 (66.96%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TrEMBL
Match: tr|A0A1S3C5T8|A0A1S3C5T8_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103497006 PE=4 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46 Identity = 114/230 (49.57%), Postives = 136/230 (59.13%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TrEMBL
Match: tr|A0A0A0L1B0|A0A0A0L1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539600 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 7.0e-38 Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0
BLAST of MELO3C008980.2 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 7.5e-32 Identity = 99/232 (42.67%), Postives = 130/232 (56.03%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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