MELO3C006672.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006672.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Phylloplanin
Location	chr06 : 4949762 .. 4950559 (-)
Sequence length	572

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAGTAATAATAATTAACCCAGTTTCCATATAATCAATTTCTACATTTTTTTTTCTTTTCTTAGAGTTTTTTTAGCATGGCGTTCTCTTTCGTTAAACAAATATACCAATCCTTATAGTCGATTTTCAAACACTGTTGTCGTTGTACTCCGTGAAGGCATGAACACAGGTTATGAGGTTAAAAATATAAATATTTTGAACGTTTTCCTCGTGATTTTTACACACAACAGATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAACTGAACCAGGTTCCTGCCATTTCCAGTAACGTGGGCTAAATATATATTTACAAAAGAGGATGATGGAGAATATCAATTATAGTATTTTACTACTTTCGTCTGATAAAATTGTACCTTGACTTATCTCTCTAAGTAATTTAATATCTAATAATATAACTACTTTTAGTTTA

mRNA sequence

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAACTGAACCAGGTTCCTGCCATTTCCAGTAACGTGGGCTAAATATATATTTACAAAAGAGGATGATGGAGAATATCAATTATAGTATTTTACTACTTTCGTCTGATAAAATTGTACCTTGACTTATCTCTCTAAGTAATTTAATATCTAATAATATAACTACTTTTAGTTTA

Coding sequence (CDS)

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAA

Protein sequence

MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVELDCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFRFSTNIRIVDNGDD

Homology

[Close]

BLAST of MELO3C006672.2.1 vs. NCBI nr
Match: XP_008438894.1 (PREDICTED: uncharacterized protein LOC103483852 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60
           MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL
Sbjct: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60

Query: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120
           DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR
Sbjct: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120

Query: 121 FSTNIRIVDNGDD 134
           FSTNIRIVDNGDD
Sbjct: 121 FSTNIRIVDNGDD 133

[Close]

BLAST of MELO3C006672.2.1 vs. NCBI nr
Match: XP_008438895.1 (PREDICTED: phylloplanin-like [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 6.9e-11
Identity = 67/148 (45.27%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--LVNPLV-----------TINGSLTGIPGGS 60
           MGL+SKM VMVMVIGALGSAPLM E+QL  ++  L+           T +G++  I   S
Sbjct: 1   MGLKSKMLVMVMVIGALGSAPLMAEAQLGNIIGSLLGVINVQGVVYCTADGNIGTINATS 60

Query: 61  LVGIPVSNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTP 120
               P  NA V+L C NG ++STTTTN+MGSF   S L NP Q  ++ LL  C  VV TP
Sbjct: 61  TPVFP--NAVVQLQCGNGNIVSTTTTNNMGSF---SMLLNPLQFLLSTLLTDCNVVVRTP 120

Query: 121 LSVFN-PIDLESFGTFRFSTNIRIVDNG 132
           L   N  +    F T R     R V +G
Sbjct: 121 LINCNATLPSTGFLTSRMQFVGRFVQDG 143

[Close]

BLAST of MELO3C006672.2.1 vs. NCBI nr
Match: XP_022973793.1 (phylloplanin-like [Cucurbita maxima])

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL----LVNPLVTINGSL----TGIPGGSLVGIP 60
           MGL+S +FV+VM   A+G+  ++ E+QL     +  L  I G++     G  G +    P
Sbjct: 1   MGLKSVLFVLVMA-AAMGAPLMVAEAQLGSIGSLLSLTRIQGTVFCTADGNIGANGTATP 60

Query: 61  V-SNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTPLSVF 110
           +  NA V+L C NG V+ST TTNS G FL+   L NP Q  ++ L + C+ +V+TPLS  
Sbjct: 61  IFPNAAVQLQCGNGNVVSTATTNSAGMFLI---LLNPLQFLLSSLTSNCSVLVNTPLSSC 117

[Close]

BLAST of MELO3C006672.2.1 vs. TrEMBL
Match: tr|A0A1S3AX34|A0A1S3AX34_CUCME (uncharacterized protein LOC103483852 OS=Cucumis melo OX=3656 GN=LOC103483852 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.3e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60
           MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL
Sbjct: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60

Query: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120
           DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR
Sbjct: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120

Query: 121 FSTNIRIVDNGDD 134
           FSTNIRIVDNGDD
Sbjct: 121 FSTNIRIVDNGDD 133

[Close]

BLAST of MELO3C006672.2.1 vs. TrEMBL
Match: tr|A0A1S3AXJ8|A0A1S3AXJ8_CUCME (phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103483853 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-11
Identity = 67/148 (45.27%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--LVNPLV-----------TINGSLTGIPGGS 60
           MGL+SKM VMVMVIGALGSAPLM E+QL  ++  L+           T +G++  I   S
Sbjct: 1   MGLKSKMLVMVMVIGALGSAPLMAEAQLGNIIGSLLGVINVQGVVYCTADGNIGTINATS 60

Query: 61  LVGIPVSNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTP 120
               P  NA V+L C NG ++STTTTN+MGSF   S L NP Q  ++ LL  C  VV TP
Sbjct: 61  TPVFP--NAVVQLQCGNGNIVSTTTTNNMGSF---SMLLNPLQFLLSTLLTDCNVVVRTP 120

Query: 121 LSVFN-PIDLESFGTFRFSTNIRIVDNG 132
           L   N  +    F T R     R V +G
Sbjct: 121 LINCNATLPSTGFLTSRMQFVGRFVQDG 143

The following BLAST results are available for this feature:

BLAST of MELO3C006672.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438894.1	3.5e-63	100.00	PREDICTED: uncharacterized protein LOC103483852 [Cucumis melo]	[more]
XP_008438895.1	6.9e-11	45.27	PREDICTED: phylloplanin-like [Cucumis melo]	[more]
XP_022973793.1	6.3e-04	39.67	phylloplanin-like [Cucurbita maxima]	[more]

BLAST of MELO3C006672.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006672.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006672.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AX34\|A0A1S3AX34_CUCME	2.3e-63	100.00	uncharacterized protein LOC103483852 OS=Cucumis melo OX=3656 GN=LOC103483852 PE=...	[more]
tr\|A0A1S3AXJ8\|A0A1S3AXJ8_CUCME	4.6e-11	45.27	phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103483853 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006672.2	MELO3C006672.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006672.2.1.exon.2	MELO3C006672.2.1.exon.2	exon
MELO3C006672.2.1.exon.1	MELO3C006672.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006672.2.1.CDS.2	MELO3C006672.2.1.CDS.2	CDS
MELO3C006672.2.1.CDS.1	MELO3C006672.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006672.2.1.three_prime_UTR.1	MELO3C006672.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006672.2.1	MELO3C006672.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34458	FAMILY NOT NAMED	coord: 6..107