MELO3C006672.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006672.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPhylloplanin
Locationchr06 : 4949762 .. 4950559 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAGTAATAATAATTAACCCAGTTTCCATATAATCAATTTCTACATTTTTTTTTCTTTTCTTAGAGTTTTTTTAGCATGGCGTTCTCTTTCGTTAAACAAATATACCAATCCTTATAGTCGATTTTCAAACACTGTTGTCGTTGTACTCCGTGAAGGCATGAACACAGGTTATGAGGTTAAAAATATAAATATTTTGAACGTTTTCCTCGTGATTTTTACACACAACAGATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAACTGAACCAGGTTCCTGCCATTTCCAGTAACGTGGGCTAAATATATATTTACAAAAGAGGATGATGGAGAATATCAATTATAGTATTTTACTACTTTCGTCTGATAAAATTGTACCTTGACTTATCTCTCTAAGTAATTTAATATCTAATAATATAACTACTTTTAGTTTA

mRNA sequence

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAACTGAACCAGGTTCCTGCCATTTCCAGTAACGTGGGCTAAATATATATTTACAAAAGAGGATGATGGAGAATATCAATTATAGTATTTTACTACTTTCGTCTGATAAAATTGTACCTTGACTTATCTCTCTAAGTAATTTAATATCTAATAATATAACTACTTTTAGTTTA

Coding sequence (CDS)

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAA

Protein sequence

MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVELDCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFRFSTNIRIVDNGDD
Homology
[Close]
BLAST of MELO3C006672.2 vs. NCBI nr
Match: XP_008438894.1 (PREDICTED: uncharacterized protein LOC103483852 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60
           MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL
Sbjct: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60

Query: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120
           DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR
Sbjct: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120

Query: 121 FSTNIRIVDNGDD 134
           FSTNIRIVDNGDD
Sbjct: 121 FSTNIRIVDNGDD 133

[Close]
BLAST of MELO3C006672.2 vs. NCBI nr
Match: XP_008438895.1 (PREDICTED: phylloplanin-like [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 6.9e-11
Identity = 67/148 (45.27%), Postives = 83/148 (56.08%), Query Frame = 0 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--LVNPLV-----------TINGSLTGIPGGS 60
           MGL+SKM VMVMVIGALGSAPLM E+QL  ++  L+           T +G++  I   S
Sbjct: 1   MGLKSKMLVMVMVIGALGSAPLMAEAQLGNIIGSLLGVINVQGVVYCTADGNIGTINATS 60

Query: 61  LVGIPVSNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTP 120
               P  NA V+L C NG ++STTTTN+MGSF   S L NP Q  ++ LL  C  VV TP
Sbjct: 61  TPVFP--NAVVQLQCGNGNIVSTTTTNNMGSF---SMLLNPLQFLLSTLLTDCNVVVRTP 120

Query: 121 LSVFN-PIDLESFGTFRFSTNIRIVDNG 132
           L   N  +    F T R     R V +G
Sbjct: 121 LINCNATLPSTGFLTSRMQFVGRFVQDG 143

[Close]
BLAST of MELO3C006672.2 vs. NCBI nr
Match: XP_022973793.1 (phylloplanin-like [Cucurbita maxima])

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 0 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL----LVNPLVTINGSL----TGIPGGSLVGIP 60
           MGL+S +FV+VM   A+G+  ++ E+QL     +  L  I G++     G  G +    P
Sbjct: 1   MGLKSVLFVLVMA-AAMGAPLMVAEAQLGSIGSLLSLTRIQGTVFCTADGNIGANGTATP 60

Query: 61  V-SNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTPLSVF 110
           +  NA V+L C NG V+ST TTNS G FL+   L NP Q  ++ L + C+ +V+TPLS  
Sbjct: 61  IFPNAAVQLQCGNGNVVSTATTNSAGMFLI---LLNPLQFLLSSLTSNCSVLVNTPLSSC 117

[Close]
BLAST of MELO3C006672.2 vs. TrEMBL
Match: tr|A0A1S3AX34|A0A1S3AX34_CUCME (uncharacterized protein LOC103483852 OS=Cucumis melo OX=3656 GN=LOC103483852 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.3e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60
           MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL
Sbjct: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60

Query: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120
           DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR
Sbjct: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120

Query: 121 FSTNIRIVDNGDD 134
           FSTNIRIVDNGDD
Sbjct: 121 FSTNIRIVDNGDD 133

[Close]
BLAST of MELO3C006672.2 vs. TrEMBL
Match: tr|A0A1S3AXJ8|A0A1S3AXJ8_CUCME (phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103483853 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-11
Identity = 67/148 (45.27%), Postives = 83/148 (56.08%), Query Frame = 0 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--LVNPLV-----------TINGSLTGIPGGS 60
           MGL+SKM VMVMVIGALGSAPLM E+QL  ++  L+           T +G++  I   S
Sbjct: 1   MGLKSKMLVMVMVIGALGSAPLMAEAQLGNIIGSLLGVINVQGVVYCTADGNIGTINATS 60

Query: 61  LVGIPVSNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTP 120
               P  NA V+L C NG ++STTTTN+MGSF   S L NP Q  ++ LL  C  VV TP
Sbjct: 61  TPVFP--NAVVQLQCGNGNIVSTTTTNNMGSF---SMLLNPLQFLLSTLLTDCNVVVRTP 120

Query: 121 LSVFN-PIDLESFGTFRFSTNIRIVDNG 132
           L   N  +    F T R     R V +G
Sbjct: 121 LINCNATLPSTGFLTSRMQFVGRFVQDG 143

The following BLAST results are available for this feature:
BLAST of MELO3C006672.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438894.13.5e-63100.00PREDICTED: uncharacterized protein LOC103483852 [Cucumis melo][more]
XP_008438895.16.9e-1145.27PREDICTED: phylloplanin-like [Cucumis melo][more]
XP_022973793.16.3e-0439.67phylloplanin-like [Cucurbita maxima][more]
BLAST of MELO3C006672.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C006672.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C006672.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AX34|A0A1S3AX34_CUCME2.3e-63100.00uncharacterized protein LOC103483852 OS=Cucumis melo OX=3656 GN=LOC103483852 PE=... [more]
tr|A0A1S3AXJ8|A0A1S3AXJ8_CUCME4.6e-1145.27phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103483853 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0008150 biological_process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006672.2.1MELO3C006672.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34458FAMILY NOT NAMEDcoord: 6..107

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006672.2Csa3G154410Cucumber (Chinese Long) v2cumedB223
MELO3C006672.2CSPI03G14510Wild cucumber (PI 183967)cpimedB224
MELO3C006672.2Cucsa.253000Cucumber (Gy14) v1cgymedB432
MELO3C006672.2Lsi05G015470Bottle gourd (USVL1VR-Ls)lsimedB385
MELO3C006672.2Cla021749Watermelon (97103) v1medwmB447
MELO3C006672.2ClCG05G006170Watermelon (Charleston Gray)medwcgB416
MELO3C006672.2Cla97C05G087710Watermelon (97103) v2medwmbB423
MELO3C006672.2Bhi01G000728Wax gourdmedwgoB530
MELO3C006672.2CsaV3_3G014750Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006672.2Cucumber (Gy14) v2cgybmedB201
MELO3C006672.2Cucurbita maxima (Rimu)cmamedB001
MELO3C006672.2Cucurbita maxima (Rimu)cmamedB273
MELO3C006672.2Cucurbita maxima (Rimu)cmamedB398
MELO3C006672.2Cucurbita maxima (Rimu)cmamedB400
MELO3C006672.2Cucurbita maxima (Rimu)cmamedB863
MELO3C006672.2Cucurbita maxima (Rimu)cmamedB950
MELO3C006672.2Cucurbita moschata (Rifu)cmomedB260
MELO3C006672.2Cucurbita moschata (Rifu)cmomedB385
MELO3C006672.2Cucurbita moschata (Rifu)cmomedB857
MELO3C006672.2Cucurbita moschata (Rifu)cmomedB940
MELO3C006672.2Cucurbita pepo (Zucchini)cpemedB170
MELO3C006672.2Cucurbita pepo (Zucchini)cpemedB368
MELO3C006672.2Cucurbita pepo (Zucchini)cpemedB693
MELO3C006672.2Cucurbita pepo (Zucchini)cpemedB951
MELO3C006672.2Melon (DHL92) v3.6.1medmedB049
MELO3C006672.2Melon (DHL92) v3.6.1medmedB112
MELO3C006672.2Bottle gourd (USVL1VR-Ls)lsimedB032
MELO3C006672.2Watermelon (Charleston Gray)medwcgB437
MELO3C006672.2Watermelon (97103) v1medwmB474
MELO3C006672.2Silver-seed gourdcarmedB0075
MELO3C006672.2Silver-seed gourdcarmedB0616
MELO3C006672.2Silver-seed gourdcarmedB0714
MELO3C006672.2Silver-seed gourdcarmedB0840
MELO3C006672.2Cucumber (Chinese Long) v3cucmedB079
MELO3C006672.2Watermelon (97103) v2medwmbB442
MELO3C006672.2Wax gourdmedwgoB523