MELO3C012934.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012934.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transcription factor, putative
Location	chr04 : 14720772 .. 14721598 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATGAAAAAAGCTAATCAGCTACCAATATAGCTCCTTAATTATAAGTTTTTACACACACTTCAAATTTCTTGAACAACCAACCCTTCAAAAAAACTAAACATACTTCCCTTTTTCATGTGTTGACAACATTATATATGTTGCATGTTTTGTGGACCCTTTGCCCTAAATTTTATGCATTATCCTCACTATCTCAAAACCTTAAGCTTTTTGAAATCCATTTTTATAAAACCCCTCCAATTTTATGATGTTTTGAATCATCATGAAGATTTGAAGAGATATAGCTAAGTTTAAGCAGTTTATTGAGAGGTATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGATTATACTGAATCAATCCATTCTATATGTGTAAATATTATATTATTGATGTATTTTCTTTTCTTCTTTCCTTCCTTTTCTGCTTAATTAAGTTTTTATTCTTTGTGTTGTTTATTTCTCAGTTGTGGATTGTAAAAGAAAAATCCTTTCATTTGGAATGTCTTTCTTAGCTTGAGATCAAAGGGGTAAATTTGTTTACACCTTCATATGTTTTTGTTTAATACTAATTAATTACTTTGATGCCT

mRNA sequence

AACATGAAAAAAGCTAATCAGCTACCAATATAGCTCCTTAATTATAAGTTTTTACACACACTTCAAATTTCTTGAACAACCAACCCTTCAAAAAAACTAAACATACTTCCCTTTTTCATGTGTTGACAACATTATATATGTTGCATGTTTTGTGGACCCTTTGCCCTAAATTTTATGCATTATCCTCACTATCTCAAAACCTTAAGCTTTTTGAAATCCATTTTTATAAAACCCCTCCAATTTTATGATGTTTTGAATCATCATGAAGATTTGAAGAGATATAGCTAAGTTTAAGCAGTTTATTGAGAGGTATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGATTATACTGAATCAATCCATTCTATATGTGTAAATATTATATTATTGATGTATTTTCTTTTCTTCTTTCCTTCCTTTTCTGCTTAATTAAGTTTTTATTCTTTGTGTTGTTTATTTCTCAGTTGTGGATTGTAAAAGAAAAATCCTTTCATTTGGAATGTCTTTCTTAGCTTGAGATCAAAGGGGTAAATTTGTTTACACCTTCATATGTTTTTGTTTAATACTAATTAATTACTTTGATGCCT

Coding sequence (CDS)

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGA

Protein sequence

MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

Homology

[Close]

BLAST of MELO3C012934.2 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_3G536650 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.8e-37
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of MELO3C012934.2 vs. NCBI nr
Match: XP_023896430.1 (transcription factor UPBEAT1 [Quercus suber] >POE55933.1 transcription factor upbeat1 [Quercus suber])

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-09
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 39  LKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V+VL GSDE
Sbjct: 88  VRRVRTLKRLIPNSESMGLDGLFQETADYILSLQMRVRAMQVMVNVLGGSDE 139

[Close]

BLAST of MELO3C012934.2 vs. NCBI nr
Match: AHY20045.1 (basic helix-loop-helix protein [Populus simonii x Populus nigra])

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of MELO3C012934.2 vs. NCBI nr
Match: XP_002301522.1 (transcription factor UPBEAT1 [Populus trichocarpa] >PNT50574.1 hypothetical protein POPTR_002G193300v3 [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of MELO3C012934.2 vs. NCBI nr
Match: XP_019427947.1 (PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius] >OIV91397.1 hypothetical protein TanjilG_02015 [Lupinus angustifolius])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 4   LAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRE 63
           + K +V  +R  + ++K++V      SR   K I  +++R L+K++P SES+EL+GLFRE
Sbjct: 42  VTKKSVQYKRPRRILMKRRVG-----SRRGVKGI-QRKVRTLKKLVPNSESLELDGLFRE 101

Query: 64  TADYIVWLQMKVRMMQALVHVLNGSDE 91
           TADYI+ LQ +VR+M+ LV+VL GSDE
Sbjct: 102 TADYILALQTRVRIMKVLVNVLTGSDE 122

[Close]

BLAST of MELO3C012934.2 vs. TAIR10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators)

HSP 1 Score: 53.5 bits (127), Expect = 7.7e-08
Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 12 RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ L++++P +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of MELO3C012934.2 vs. Swiss-Prot
Match: sp|O22901|BH151_ARATH (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 12 RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ L++++P +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of MELO3C012934.2 vs. TrEMBL
Match: tr|A0A0A0L8J6|A0A0A0L8J6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.5e-37
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of MELO3C012934.2 vs. TrEMBL
Match: tr|A0A2P4HI25|A0A2P4HI25_QUESU (Transcription factor upbeat1 OS=Quercus suber OX=58331 GN=CFP56_45148 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 39  LKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V+VL GSDE
Sbjct: 88  VRRVRTLKRLIPNSESMGLDGLFQETADYILSLQMRVRAMQVMVNVLGGSDE 139

[Close]

BLAST of MELO3C012934.2 vs. TrEMBL
Match: tr|B9GSV5|B9GSV5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300v3 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of MELO3C012934.2 vs. TrEMBL
Match: tr|A0A2R6QD52|A0A2R6QD52_ACTCH (Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19692 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 32/55 (58.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 35  KRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSD 90
           K +  K++R LRK++PKSESM L+GLFR+TA+YI+ LQM+V++MQ +V VL+GS+
Sbjct: 63  KTVVEKKVRVLRKLVPKSESMGLDGLFRDTAEYILALQMRVQVMQIMVQVLSGSE 117

[Close]

BLAST of MELO3C012934.2 vs. TrEMBL
Match: tr|A0A067JWP1|A0A067JWP1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14053 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K++P+SESM L GLFRETADYI+ LQM+V++MQ +V VL GS +
Sbjct: 73  RRVRTLKKLVPRSESMGLEGLFRETADYILTLQMRVKVMQIMVKVLAGSSD 123

The following BLAST results are available for this feature:

BLAST of MELO3C012934.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	3.8e-37	95.56	hypothetical protein Csa_3G536650 [Cucumis sativus]	[more]
XP_023896430.1	4.4e-09	63.46	transcription factor UPBEAT1 [Quercus suber] >POE55933.1 transcription factor up...	[more]
AHY20045.1	5.7e-09	64.71	basic helix-loop-helix protein [Populus simonii x Populus nigra]	[more]
XP_002301522.1	5.7e-09	64.71	transcription factor UPBEAT1 [Populus trichocarpa] >PNT50574.1 hypothetical prot...	[more]
XP_019427947.1	1.7e-08	47.13	PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius] >OIV91397.1...	[more]

BLAST of MELO3C012934.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47270.1	7.7e-08	39.74	sequence-specific DNA binding transcription factors;transcription regulators	[more]

BLAST of MELO3C012934.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22901\|BH151_ARATH	1.4e-06	39.74	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of MELO3C012934.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8J6\|A0A0A0L8J6_CUCSA	2.5e-37	95.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
tr\|A0A2P4HI25\|A0A2P4HI25_QUESU	2.9e-09	63.46	Transcription factor upbeat1 OS=Quercus suber OX=58331 GN=CFP56_45148 PE=4 SV=1	[more]
tr\|B9GSV5\|B9GSV5_POPTR	3.8e-09	64.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300v3 PE=...	[more]
tr\|A0A2R6QD52\|A0A2R6QD52_ACTCH	1.4e-08	58.18	Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]
tr\|A0A067JWP1\|A0A067JWP1_JATCU	2.5e-08	60.78	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14053 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:2000280	regulation of root development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012934.2.1	MELO3C012934.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 12..90
None	No IPR available	PANTHER	PTHR33124:SF13	TRANSCRIPTION FACTOR UPBEAT1	coord: 12..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012934.2	Csa3G536650	Cucumber (Chinese Long) v2	cumedB197
MELO3C012934.2	CSPI03G25030	Wild cucumber (PI 183967)	cpimedB197
MELO3C012934.2	Cucsa.300600	Cucumber (Gy14) v1	cgymedB493
MELO3C012934.2	CmaCh01G002800	Cucurbita maxima (Rimu)	cmamedB482
MELO3C012934.2	CmoCh01G002880	Cucurbita moschata (Rifu)	cmomedB469
MELO3C012934.2	Lsi03G011230	Bottle gourd (USVL1VR-Ls)	lsimedB274
MELO3C012934.2	Cp4.1LG02g16230	Cucurbita pepo (Zucchini)	cpemedB622
MELO3C012934.2	Cla017347	Watermelon (97103) v1	medwmB346
MELO3C012934.2	ClCG10G011560	Watermelon (Charleston Gray)	medwcgB311
MELO3C012934.2	Cla97C10G194380	Watermelon (97103) v2	medwmbB308
MELO3C012934.2	Bhi11G001080	Wax gourd	medwgoB387
MELO3C012934.2	CsaV3_3G026610	Cucumber (Chinese Long) v3	cucmedB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012934.2	Cucumber (Gy14) v2	cgybmedB178
MELO3C012934.2	Watermelon (Charleston Gray)	medwcgB338
MELO3C012934.2	Silver-seed gourd	carmedB0769